Wall clock time and date at job start Tue Mar 31 2020 05:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86797 * 120.00276 * 2 1 4 4 H 1.48500 * 109.47461 * 270.00498 * 3 2 1 5 5 H 1.48511 * 109.47163 * 30.00244 * 3 2 1 6 6 H 1.48493 * 109.47144 * 150.00107 * 3 2 1 7 7 C 1.38797 * 119.99783 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99867 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00243 * 0.02562 * 7 2 1 10 10 C 1.80993 * 100.00218 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47074 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99850 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99648 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99908 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47341 * 180.02562 * 14 13 11 16 16 N 1.46496 * 109.47337 * 180.02562 * 15 14 13 17 17 C 1.46506 * 119.99759 * 89.99861 * 16 15 14 18 18 C 1.53002 * 109.47035 * 90.00495 * 17 16 15 19 19 O 1.42903 * 109.47256 * 64.99491 * 18 17 16 20 20 C 1.34771 * 120.00157 * 270.00189 * 16 15 14 21 21 O 1.21283 * 120.00062 * 0.02562 * 20 16 15 22 22 C 1.50700 * 120.00216 * 179.97438 * 20 16 15 23 23 C 1.52999 * 109.47172 * 179.97438 * 22 20 16 24 24 C 1.53002 * 117.49956 * 243.62018 * 23 22 20 25 25 C 1.52998 * 60.00123 * 252.51326 * 24 23 22 26 26 H 0.97003 * 119.99584 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47596 * 59.99402 * 10 9 7 28 28 H 1.09009 * 109.47161 * 299.99585 * 10 9 7 29 29 H 0.97006 * 120.00491 * 359.97438 * 13 11 10 30 30 H 1.08998 * 109.46460 * 60.00404 * 14 13 11 31 31 H 1.08992 * 109.47151 * 300.00375 * 14 13 11 32 32 H 1.09001 * 109.47328 * 60.00031 * 15 14 13 33 33 H 1.08999 * 109.46987 * 300.00518 * 15 14 13 34 34 H 1.09004 * 109.47073 * 210.00177 * 17 16 15 35 35 H 1.09000 * 109.47212 * 330.00260 * 17 16 15 36 36 H 1.08997 * 109.47011 * 184.99706 * 18 17 16 37 37 H 1.09005 * 109.46847 * 304.99833 * 18 17 16 38 38 H 0.96694 * 113.99853 * 179.97438 * 19 18 17 39 39 H 1.09000 * 109.47357 * 300.00116 * 22 20 16 40 40 H 1.08998 * 109.46869 * 60.00030 * 22 20 16 41 41 H 1.08995 * 115.54839 * 29.33526 * 23 22 20 42 42 H 1.09000 * 117.49408 * 0.02562 * 24 23 22 43 43 H 1.09000 * 117.49701 * 145.02314 * 24 23 22 44 44 H 1.08998 * 117.49899 * 252.51052 * 25 24 23 45 45 H 1.08998 * 117.50134 * 107.49198 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4479 2.6527 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0019 10 6 2.5157 -3.8914 -0.0013 11 6 1.9872 -5.3028 -0.0030 12 8 0.7909 -5.5022 -0.0040 13 7 2.8439 -6.3431 -0.0035 14 6 2.3302 -7.7151 -0.0045 15 6 3.5022 -8.6986 -0.0042 16 7 2.9884 -10.0706 -0.0059 17 6 2.7328 -10.7554 -1.2755 18 6 3.9947 -11.4998 -1.7165 19 8 4.2876 -12.5379 -0.7791 20 6 2.7509 -10.7026 1.1605 21 8 2.9620 -10.1355 2.2116 22 6 2.2219 -12.1137 1.1588 23 6 2.0423 -12.5928 2.6007 24 6 2.8983 -13.7730 3.0649 25 6 1.4013 -13.9656 2.8143 26 1 -0.4850 0.8401 0.0004 27 1 3.1238 -3.7318 0.8891 28 1 3.1250 -3.7310 -0.8909 29 1 3.8008 -6.1836 -0.0031 30 1 1.7219 -7.8745 -0.8948 31 1 1.7213 -7.8758 0.8851 32 1 4.1102 -8.5391 0.8863 33 1 4.1115 -8.5380 -0.8936 34 1 1.9175 -11.4673 -1.1466 35 1 2.4590 -10.0229 -2.0348 36 1 3.8337 -11.9354 -2.7026 37 1 4.8315 -10.8025 -1.7596 38 1 5.0767 -13.0528 -0.9963 39 1 1.2614 -12.1411 0.6441 40 1 2.9281 -12.7658 0.6450 41 1 1.8196 -11.8144 3.3304 42 1 3.5897 -14.2077 2.3430 43 1 3.2392 -13.7710 4.1002 44 1 0.7573 -14.0904 3.6848 45 1 1.1076 -14.5274 1.9277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001056777562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:46 Heat of formation + Delta-G solvation = -129.361685 kcal Electronic energy + Delta-G solvation = -25359.690011 eV Core-core repulsion = 21503.119552 eV Total energy + Delta-G solvation = -3856.570458 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.27282 -40.54059 -38.30727 -37.86067 -36.76006 -35.48214 -34.58877 -32.24261 -30.69769 -30.32212 -28.38481 -27.62355 -24.33510 -23.94578 -23.21053 -21.99367 -21.59240 -20.03939 -19.69882 -18.51900 -18.21084 -17.87699 -17.57264 -17.07073 -16.88434 -16.73513 -16.56349 -15.93515 -15.69429 -15.36659 -15.23149 -14.83398 -14.75374 -14.51608 -14.42376 -14.01525 -13.75799 -13.58656 -13.17474 -13.17099 -13.00888 -12.89168 -12.63729 -12.59706 -12.37599 -12.33152 -12.00546 -11.74488 -11.29042 -11.14613 -11.10857 -10.91083 -10.84175 -10.69731 -10.28757 -10.21137 -9.78969 -8.68027 -8.35083 -6.13610 1.23795 1.42522 1.44104 1.55101 1.56938 1.65749 1.82034 2.26746 2.44357 2.93110 2.99011 3.31461 3.36391 3.59639 3.79396 3.83219 3.94315 3.98311 4.07350 4.15666 4.19687 4.28396 4.29202 4.37015 4.49581 4.53269 4.61438 4.70793 4.72333 4.78389 4.80347 4.85859 4.93024 5.03532 5.07676 5.28512 5.28972 5.41527 5.43345 5.53002 6.19510 6.33643 6.44551 6.96891 7.06023 7.17790 7.20619 8.74212 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.024364 B = 0.001903 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.943241 B =14708.069107 C =15269.837837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.001 2.999 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.128 4.128 11 C 0.534 3.466 12 O -0.567 6.567 13 N -0.709 5.709 14 C 0.113 3.887 15 C 0.114 3.886 16 N -0.606 5.606 17 C 0.095 3.905 18 C 0.061 3.939 19 O -0.588 6.588 20 C 0.518 3.482 21 O -0.588 6.588 22 C -0.104 4.104 23 C -0.166 4.166 24 C -0.175 4.175 25 C -0.166 4.166 26 H 0.271 0.729 27 H 0.109 0.891 28 H 0.116 0.884 29 H 0.419 0.581 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.076 0.924 33 H 0.121 0.879 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.395 0.605 39 H 0.104 0.896 40 H 0.139 0.861 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.330 -31.605 -5.631 34.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.279 4.279 11 C 0.320 3.680 12 O -0.445 6.445 13 N -0.364 5.364 14 C -0.012 4.012 15 C -0.009 4.009 16 N -0.338 5.338 17 C -0.027 4.027 18 C -0.018 4.018 19 O -0.397 6.397 20 C 0.309 3.691 21 O -0.468 6.468 22 C -0.143 4.143 23 C -0.185 4.185 24 C -0.212 4.212 25 C -0.203 4.203 26 H 0.080 0.920 27 H 0.127 0.873 28 H 0.134 0.866 29 H 0.256 0.744 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.139 0.861 34 H 0.115 0.885 35 H 0.132 0.868 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.246 0.754 39 H 0.122 0.878 40 H 0.156 0.844 41 H 0.100 0.900 42 H 0.125 0.875 43 H 0.106 0.894 44 H 0.114 0.886 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.787 -31.357 -4.817 33.508 hybrid contribution 2.186 1.405 0.058 2.599 sum 12.973 -29.952 -4.759 32.986 Atomic orbital electron populations 1.70193 1.08006 1.28611 1.48006 1.26163 0.96002 1.03417 0.93748 0.84925 0.78139 0.75877 0.78851 1.19125 1.20392 1.18216 1.23206 0.95387 0.91874 1.58859 0.89768 1.85615 1.10672 0.99373 1.97066 1.23363 1.03559 0.93951 1.07042 1.20126 0.86175 0.86768 0.74976 1.90694 1.17575 1.86134 1.50131 1.45537 1.10497 1.04694 1.75684 1.21609 0.97733 0.80652 1.01212 1.21483 0.94306 0.80127 1.05021 1.47843 1.65581 1.13386 1.06974 1.22129 0.98416 0.97332 0.84824 1.22668 0.96794 0.89715 0.92604 1.86337 1.51627 1.49239 1.52531 1.21234 0.76055 0.89190 0.82666 1.90683 1.54018 1.69195 1.32881 1.21437 1.03754 0.92494 0.96639 1.22029 1.07230 0.92115 0.97095 1.23079 0.94323 1.01352 1.02480 1.23063 0.95530 0.97627 1.04070 0.92000 0.87324 0.86551 0.74364 0.91181 0.94849 0.90554 0.86148 0.88469 0.86757 0.89945 0.93007 0.75449 0.87780 0.84379 0.90044 0.87451 0.89388 0.88619 0.86965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.59 13.22 21.65 0.29 -56.30 16 2 C 0.01 0.65 5.49 84.86 0.47 1.12 16 3 Si 1.00 43.89 29.55 68.60 2.03 45.91 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 7 C -0.55 -31.40 9.50 67.95 0.65 -30.76 16 8 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 9 S -0.15 -8.71 20.57 -56.49 -1.16 -9.88 16 10 C -0.13 -5.13 6.16 71.24 0.44 -4.69 16 11 C 0.53 20.34 7.85 87.66 0.69 21.03 16 12 O -0.57 -27.40 15.86 -3.02 -0.05 -27.45 16 13 N -0.71 -18.48 5.56 -463.07 -2.57 -21.05 16 14 C 0.11 2.76 6.00 86.38 0.52 3.28 16 15 C 0.11 1.91 5.52 86.38 0.48 2.38 16 16 N -0.61 -9.74 2.46 -821.81 -2.02 -11.76 16 17 C 0.09 0.74 5.78 86.38 0.50 1.24 16 18 C 0.06 0.25 7.39 71.98 0.53 0.78 16 19 O -0.59 -3.56 10.38 -148.98 -1.55 -5.11 16 20 C 0.52 11.66 7.37 87.66 0.65 12.30 16 21 O -0.59 -19.06 15.14 -3.04 -0.05 -19.10 16 22 C -0.10 -1.69 4.47 29.85 0.13 -1.55 16 23 C -0.17 -3.16 5.42 -10.79 -0.06 -3.22 16 24 C -0.18 -2.65 10.18 30.59 0.31 -2.34 16 25 C -0.17 -2.24 10.25 30.59 0.31 -1.93 16 26 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 27 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 28 H 0.12 4.05 8.14 -2.39 -0.02 4.04 16 29 H 0.42 7.54 8.47 -92.70 -0.79 6.76 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.56 7.42 -2.39 -0.02 1.54 16 33 H 0.12 1.10 8.07 -2.39 -0.02 1.08 16 34 H 0.10 0.64 6.44 -2.38 -0.02 0.62 16 35 H 0.11 0.54 8.07 -2.39 -0.02 0.52 16 36 H 0.08 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.05 0.21 8.14 -2.38 -0.02 0.19 16 38 H 0.39 -0.46 9.12 -74.06 -0.68 -1.14 16 39 H 0.10 1.34 7.40 -2.39 -0.02 1.32 16 40 H 0.14 1.79 4.85 -2.39 -0.01 1.77 16 41 H 0.08 2.10 7.30 -2.39 -0.02 2.08 16 42 H 0.11 1.31 8.03 -2.39 -0.02 1.29 16 43 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -89.15 390.01 0.08 -89.06 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -0.45 Total: 18.03 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 5.61 Total: -2.36 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -4.30 Total: -89.12 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: -1.64 Total: -51.66 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.88 kcal Total: -89.15 0.08 -89.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001056777562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.299 kcal (2) G-P(sol) polarization free energy of solvation -89.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds