Wall clock time and date at job start Tue Mar 31 2020 05:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99920 * 2 1 4 4 H 1.48510 * 109.46818 * 239.99881 * 3 2 1 5 5 H 1.48493 * 109.46959 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47430 * 119.99938 * 3 2 1 7 7 C 1.38814 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00191 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00003 * 0.02562 * 7 2 1 10 10 C 1.47288 * 125.79091 * 359.97438 * 9 7 2 11 11 C 1.54329 * 107.30289 * 178.92545 * 10 9 7 12 12 H 1.08997 * 110.71906 * 96.18043 * 11 10 9 13 13 O 1.42900 * 110.87287 * 219.38258 * 11 10 9 14 14 C 1.55153 * 102.94136 * 337.81670 * 11 10 9 15 15 H 1.09001 * 111.00555 * 277.42686 * 14 11 10 16 16 N 1.46502 * 111.00158 * 153.57740 * 14 11 10 17 17 C 1.34780 * 120.00135 * 161.35101 * 16 14 11 18 18 O 1.21629 * 119.99780 * 354.88682 * 17 16 14 19 19 C 1.47162 * 120.00361 * 174.88373 * 17 16 14 20 20 C 1.38406 * 126.88003 * 5.14069 * 19 17 16 21 21 C 1.39672 * 105.35434 * 179.91349 * 20 19 17 22 22 N 1.30858 * 107.86472 * 0.35065 * 21 20 19 23 23 N 1.28442 * 110.92686 * 359.77486 * 22 21 20 24 24 C 1.46507 * 125.19001 * 180.02562 * 23 22 21 25 25 C 1.52997 * 109.46749 * 274.70484 * 24 23 22 26 26 F 1.39904 * 109.47005 * 174.99751 * 25 24 23 27 27 F 1.39900 * 109.47617 * 295.00121 * 25 24 23 28 28 C 1.47422 * 125.64858 * 179.97438 * 9 7 2 29 29 H 0.96996 * 119.99955 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.85978 * 59.50502 * 10 9 7 31 31 H 1.09001 * 110.00045 * 298.42591 * 10 9 7 32 32 H 0.96705 * 114.00100 * 293.61468 * 13 11 10 33 33 H 0.96995 * 120.00553 * 341.34945 * 16 14 11 34 34 H 1.07998 * 127.32435 * 359.97438 * 20 19 17 35 35 H 1.08007 * 126.06533 * 180.10572 * 21 20 19 36 36 H 1.08996 * 109.47089 * 34.70245 * 24 23 22 37 37 H 1.08997 * 109.46523 * 154.70860 * 24 23 22 38 38 H 1.09002 * 109.47048 * 55.00653 * 25 24 23 39 39 H 1.09007 * 110.37068 * 85.26097 * 28 9 7 40 40 H 1.09002 * 110.36668 * 323.04972 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1397 -2.5367 0.0005 11 6 -0.4477 -4.0487 -0.0271 12 1 -0.6303 -4.4235 0.9800 13 8 -1.5622 -4.3258 -0.8775 14 6 0.8539 -4.6578 -0.6120 15 1 0.8589 -4.5974 -1.7003 16 7 1.0337 -6.0411 -0.1641 17 6 1.8678 -6.8626 -0.8318 18 8 2.3995 -6.4857 -1.8588 19 6 2.1354 -8.2155 -0.3184 20 6 1.5376 -8.8235 0.7719 21 6 2.1190 -10.0908 0.8535 22 7 2.9917 -10.1953 -0.1160 23 7 3.0275 -9.1208 -0.8188 24 6 3.8928 -8.9000 -1.9803 25 6 5.2608 -8.4021 -1.5096 26 9 6.1227 -8.3001 -2.6069 27 9 5.1190 -7.1462 -0.9097 28 6 1.9335 -3.7311 0.0005 29 1 -0.4850 0.8400 0.0004 30 1 -0.5606 -2.0565 -0.8828 31 1 -0.5598 -2.0892 0.9013 32 1 -2.4007 -3.9664 -0.5567 33 1 0.5525 -6.3657 0.6130 34 1 0.7816 -8.4069 1.4209 35 1 1.8917 -10.8485 1.5888 36 1 4.0147 -9.8358 -2.5256 37 1 3.4400 -8.1546 -2.6340 38 1 5.6745 -9.1054 -0.7869 39 1 2.1669 -4.0420 1.0189 40 1 2.8339 -3.7400 -0.6137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076995699.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:19 Heat of formation + Delta-G solvation = -68.355934 kcal Electronic energy + Delta-G solvation = -28877.028219 eV Core-core repulsion = 24365.722438 eV Total energy + Delta-G solvation = -4511.305780 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.22083 -47.22253 -42.82119 -39.59682 -37.83187 -35.14377 -34.70187 -33.90139 -31.98455 -30.96501 -29.28150 -28.39660 -27.08186 -24.75911 -24.11848 -23.16959 -21.81577 -20.70302 -20.32880 -20.10183 -18.50418 -17.73379 -17.62290 -17.07887 -17.04956 -16.70767 -16.06344 -15.72984 -15.27326 -14.98243 -14.44663 -14.41259 -14.20616 -14.12344 -13.94296 -13.70412 -13.56837 -13.30124 -12.98214 -12.71905 -12.60814 -12.51295 -12.10874 -11.57693 -11.55577 -11.28703 -11.14560 -10.92757 -10.80576 -10.23743 -10.07818 -9.95427 -9.85818 -9.55066 -9.40465 -9.36193 -8.94385 -8.66277 -6.93917 -5.78031 -3.12459 0.99696 1.87267 2.30828 3.05901 3.12875 3.39846 3.42170 3.43902 3.45198 3.82673 3.99103 4.35960 4.39609 4.45452 4.49490 4.56798 4.83092 4.93454 5.10541 5.10673 5.31118 5.40325 5.45692 5.52842 5.60550 5.76376 6.01446 6.06152 6.15384 6.31467 6.40437 6.58220 6.79130 7.27740 7.42022 7.46373 7.70358 7.71866 8.05959 8.11841 8.17099 9.12964 9.73130 10.35875 11.33973 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.015016 B = 0.003355 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.239113 B = 8344.216038 C = 9653.584921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.006 4.006 3 Si 0.915 3.085 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.230 4.230 8 H 0.081 0.919 9 N -0.599 5.599 10 C 0.153 3.847 11 C 0.070 3.930 12 H 0.059 0.941 13 O -0.563 6.563 14 C 0.140 3.860 15 H 0.107 0.893 16 N -0.696 5.696 17 C 0.588 3.412 18 O -0.531 6.531 19 C -0.016 4.016 20 C -0.187 4.187 21 C 0.008 3.992 22 N -0.283 5.283 23 N -0.266 5.266 24 C 0.065 3.935 25 C 0.258 3.742 26 F -0.193 7.193 27 F -0.188 7.188 28 C 0.130 3.870 29 H 0.254 0.746 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.378 0.622 33 H 0.400 0.600 34 H 0.165 0.835 35 H 0.190 0.810 36 H 0.128 0.872 37 H 0.146 0.854 38 H 0.115 0.885 39 H 0.025 0.975 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.926 -21.171 1.920 21.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.202 4.202 3 Si 0.745 3.255 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.357 4.357 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.028 3.972 11 C 0.010 3.990 12 H 0.077 0.923 13 O -0.368 6.368 14 C 0.035 3.965 15 H 0.124 0.876 16 N -0.346 5.346 17 C 0.373 3.627 18 O -0.408 6.408 19 C -0.144 4.144 20 C -0.216 4.216 21 C -0.169 4.169 22 N -0.114 5.114 23 N -0.053 5.053 24 C -0.057 4.057 25 C 0.203 3.797 26 F -0.174 7.174 27 F -0.169 7.169 28 C 0.003 3.997 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.225 0.775 33 H 0.235 0.765 34 H 0.182 0.818 35 H 0.207 0.793 36 H 0.146 0.854 37 H 0.164 0.836 38 H 0.132 0.868 39 H 0.042 0.958 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.608 -21.601 0.209 21.901 hybrid contribution -0.767 1.584 1.147 2.100 sum 2.841 -20.017 1.356 20.263 Atomic orbital electron populations 1.69899 1.04934 1.25369 1.56983 1.24802 0.95769 0.97752 1.01899 0.86147 0.78455 0.82840 0.78022 1.21016 1.21539 1.21083 1.19049 0.90547 0.82021 1.44132 0.90149 1.44277 1.01114 0.99818 1.87469 1.21863 0.85439 0.87618 1.02297 1.23437 0.85372 0.98585 0.91653 0.92309 1.86465 1.18706 1.79932 1.51709 1.22349 0.94929 0.78058 1.01126 0.87553 1.45580 1.44800 1.12195 1.32001 1.16840 0.79708 0.82447 0.83740 1.90791 1.50760 1.75841 1.23439 1.21580 0.99043 0.94354 0.99462 1.22322 1.04520 0.95855 0.98870 1.23619 0.96563 0.98108 0.98596 1.73198 1.22461 1.08825 1.06947 1.45211 1.28377 1.08990 1.22747 1.23224 0.89441 1.06932 0.86073 1.22024 0.89384 0.83950 0.84373 1.93025 1.71191 1.96691 1.56482 1.93103 1.96172 1.44078 1.83525 1.21844 0.94794 0.85687 0.97403 0.93580 0.92011 0.93174 0.77530 0.76478 0.81785 0.79290 0.85353 0.83614 0.86763 0.95758 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.49 10.34 55.49 0.57 -25.92 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 3 Si 0.92 22.00 29.55 -169.99 -5.02 16.98 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 8 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 9 N -0.60 -15.14 3.40 -169.86 -0.58 -15.72 16 10 C 0.15 3.54 5.16 -2.92 -0.02 3.53 16 11 C 0.07 1.22 3.95 -24.90 -0.10 1.13 16 12 H 0.06 0.89 8.00 -51.93 -0.42 0.47 16 13 O -0.56 -9.24 13.40 -35.23 -0.47 -9.72 16 14 C 0.14 2.55 3.08 -65.79 -0.20 2.35 16 15 H 0.11 2.22 7.66 -51.93 -0.40 1.82 16 16 N -0.70 -10.00 5.22 -52.89 -0.28 -10.28 16 17 C 0.59 8.93 7.79 -12.64 -0.10 8.83 16 18 O -0.53 -9.65 14.13 5.25 0.07 -9.57 16 19 C -0.02 -0.21 6.96 -82.06 -0.57 -0.78 16 20 C -0.19 -1.79 10.50 -38.98 -0.41 -2.20 16 21 C 0.01 0.07 12.03 -17.43 -0.21 -0.13 16 22 N -0.28 -3.07 11.90 30.59 0.36 -2.70 16 23 N -0.27 -3.09 3.33 -57.14 -0.19 -3.28 16 24 C 0.07 0.67 6.18 -4.04 -0.02 0.64 16 25 C 0.26 2.72 5.55 37.16 0.21 2.93 16 26 F -0.19 -2.16 17.34 2.25 0.04 -2.12 16 27 F -0.19 -2.75 17.16 2.25 0.04 -2.71 16 28 C 0.13 2.75 6.92 -2.53 -0.02 2.74 16 29 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 30 H 0.06 1.62 7.31 -51.93 -0.38 1.24 16 31 H 0.05 1.25 7.52 -51.93 -0.39 0.86 16 32 H 0.38 4.62 9.12 45.56 0.42 5.04 16 33 H 0.40 4.47 7.55 -40.82 -0.31 4.16 16 34 H 0.16 1.09 7.58 -52.49 -0.40 0.69 16 35 H 0.19 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.15 1.74 5.96 -51.93 -0.31 1.43 16 38 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 348.43 15.07 5.25 5.25 Total: -1.00 -34.50 348.43 -5.73 -40.23 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -3.84 Total: 7.33 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: -1.69 Total: 12.23 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.11 Total: -57.90 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.40 Total: -19.29 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.08 Total: -4.83 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.50 -5.73 -40.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076995699.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.127 kcal (2) G-P(sol) polarization free energy of solvation -34.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds