Wall clock time and date at job start Tue Mar 31 2020 05:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86792 * 119.99875 * 2 1 4 4 H 1.48500 * 109.47151 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47142 * 60.00769 * 3 2 1 6 6 H 1.48508 * 109.47417 * 300.00651 * 3 2 1 7 7 C 1.38810 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00203 * 34.47219 * 7 2 1 9 9 N 1.36936 * 119.99782 * 214.47366 * 7 2 1 10 10 C 1.47024 * 125.64802 * 25.69915 * 9 7 2 11 11 C 1.54338 * 107.26406 * 178.85276 * 10 9 7 12 12 H 1.08993 * 110.51632 * 96.45399 * 11 10 9 13 13 O 1.42903 * 110.99933 * 219.60129 * 11 10 9 14 14 C 1.55152 * 103.01921 * 338.13863 * 11 10 9 15 15 H 1.09004 * 111.01046 * 277.23399 * 14 11 10 16 16 N 1.46504 * 111.03424 * 153.40002 * 14 11 10 17 17 C 1.34775 * 120.00212 * 161.33736 * 16 14 11 18 18 O 1.21284 * 119.99787 * 359.97438 * 17 16 14 19 19 C 1.50697 * 120.00325 * 179.97438 * 17 16 14 20 20 N 1.46501 * 109.47226 * 179.97438 * 19 17 16 21 21 C 1.34950 * 126.03510 * 125.00176 * 20 19 17 22 22 C 1.35314 * 107.74418 * 179.97438 * 21 20 19 23 23 C 1.39873 * 107.92259 * 0.02562 * 22 21 20 24 24 C 1.50694 * 125.90019 * 180.02562 * 23 22 21 25 25 F 1.39902 * 109.47283 * 209.99387 * 24 23 22 26 26 F 1.39899 * 109.46972 * 329.99286 * 24 23 22 27 27 N 1.30837 * 108.19957 * 359.73313 * 23 22 21 28 28 C 1.47425 * 125.64932 * 206.00870 * 9 7 2 29 29 H 0.97000 * 119.99944 * 185.08730 * 1 2 3 30 30 H 1.08994 * 109.88192 * 298.39885 * 10 9 7 31 31 H 1.08998 * 109.88047 * 59.56355 * 10 9 7 32 32 H 0.96697 * 114.00240 * 293.78166 * 13 11 10 33 33 H 0.97004 * 120.00081 * 341.32927 * 16 14 11 34 34 H 1.08996 * 109.47349 * 299.99633 * 19 17 16 35 35 H 1.09001 * 109.47122 * 59.99445 * 19 17 16 36 36 H 1.08002 * 126.12505 * 0.02562 * 21 20 19 37 37 H 1.07996 * 126.04070 * 180.02562 * 22 21 20 38 38 H 1.08999 * 109.47369 * 89.99636 * 24 23 22 39 39 H 1.08996 * 110.36742 * 322.93225 * 28 9 7 40 40 H 1.09006 * 110.36515 * 85.25286 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8916 2.3963 1.2126 6 1 1.8913 2.3965 -1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 1.6125 -2.0551 -0.5303 9 7 3.1993 -1.3066 0.6707 10 6 3.6074 -0.4896 1.8229 11 6 5.0037 -0.9804 2.2607 12 1 5.7825 -0.3544 1.8254 13 8 5.1144 -1.0046 3.6853 14 6 5.0666 -2.4180 1.6807 15 1 4.5691 -3.1281 2.3413 16 7 6.4516 -2.8226 1.4272 17 6 6.7577 -4.1276 1.2872 18 8 5.8864 -4.9672 1.3717 19 6 8.1823 -4.5438 1.0259 20 7 8.2522 -6.0029 0.9145 21 6 8.7633 -6.6962 -0.1243 22 6 8.6411 -8.0137 0.1591 23 6 8.0339 -8.1295 1.4138 24 6 7.7062 -9.4191 2.1212 25 9 6.5792 -9.2345 2.9293 26 9 7.4437 -10.4161 1.1755 27 7 7.8053 -6.9247 1.8700 28 6 4.2847 -2.2525 0.3537 29 1 -0.4850 -0.8367 0.0745 30 1 3.6551 0.5604 1.5344 31 1 2.8977 -0.6199 2.6397 32 1 5.0806 -0.1305 4.0974 33 1 7.1485 -2.1511 1.3599 34 1 8.5284 -4.0912 0.0967 35 1 8.8146 -4.2118 1.8493 36 1 9.1937 -6.2749 -1.0208 37 1 8.9565 -8.8313 -0.4720 38 1 8.5518 -9.7190 2.7402 39 1 3.8726 -3.2096 0.0343 40 1 4.9330 -1.8406 -0.4198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077109073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:17 Heat of formation + Delta-G solvation = -60.056440 kcal Electronic energy + Delta-G solvation = -27963.926333 eV Core-core repulsion = 23452.980446 eV Total energy + Delta-G solvation = -4510.945887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.13576 -47.16133 -41.60320 -39.84495 -38.17275 -35.39652 -34.29474 -33.96241 -32.13020 -30.65789 -29.52025 -28.42267 -27.60229 -25.89258 -23.90766 -21.73875 -21.24630 -20.97283 -20.43788 -20.23882 -17.96180 -17.86493 -17.66028 -17.43450 -17.14935 -17.02245 -16.52599 -15.93435 -15.60152 -14.99914 -14.59159 -14.30316 -14.08723 -14.03565 -13.74879 -13.63501 -13.48682 -13.40626 -13.05998 -12.97371 -12.88799 -12.72207 -12.50639 -11.83412 -11.66522 -11.61018 -11.15542 -11.00088 -10.85440 -10.45026 -10.30175 -10.00075 -9.67103 -9.54106 -9.38080 -9.10419 -8.96057 -8.41239 -7.10259 -6.46654 -3.34333 1.43730 1.90685 2.26769 2.46125 2.94087 3.36728 3.45002 3.49567 3.57190 3.88726 4.12553 4.21455 4.34782 4.45767 4.54773 4.61050 4.62968 4.67553 4.76422 5.09863 5.18836 5.20693 5.30262 5.34234 5.40515 5.56744 5.78393 5.81172 6.06562 6.24101 6.34321 6.49658 6.53447 6.57523 6.68015 7.24432 7.37779 7.73051 7.78126 8.10988 8.29862 8.91429 9.48752 10.20103 10.96237 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.019638 B = 0.002570 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.465191 B =10891.010592 C =11237.750716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.002 3.998 3 Si 1.037 2.963 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.295 1.295 7 C -0.345 4.345 8 H 0.071 0.929 9 N -0.595 5.595 10 C 0.097 3.903 11 C 0.085 3.915 12 H 0.066 0.934 13 O -0.559 6.559 14 C 0.143 3.857 15 H 0.106 0.894 16 N -0.714 5.714 17 C 0.497 3.503 18 O -0.503 6.503 19 C 0.115 3.885 20 N -0.351 5.351 21 C 0.058 3.942 22 C -0.242 4.242 23 C -0.016 4.016 24 C 0.362 3.638 25 F -0.189 7.189 26 F -0.192 7.192 27 N -0.221 5.221 28 C 0.124 3.876 29 H 0.270 0.730 30 H 0.037 0.963 31 H 0.050 0.950 32 H 0.378 0.622 33 H 0.398 0.602 34 H 0.130 0.870 35 H 0.118 0.882 36 H 0.182 0.818 37 H 0.156 0.844 38 H 0.130 0.870 39 H 0.054 0.946 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.252 -9.977 2.657 27.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.202 4.202 3 Si 0.867 3.133 4 H -0.208 1.208 5 H -0.219 1.219 6 H -0.223 1.223 7 C -0.471 4.471 8 H 0.089 0.911 9 N -0.324 5.324 10 C -0.029 4.029 11 C 0.025 3.975 12 H 0.084 0.916 13 O -0.364 6.364 14 C 0.038 3.962 15 H 0.124 0.876 16 N -0.366 5.366 17 C 0.280 3.720 18 O -0.375 6.375 19 C -0.011 4.011 20 N -0.134 5.134 21 C -0.086 4.086 22 C -0.271 4.271 23 C -0.184 4.184 24 C 0.306 3.694 25 F -0.170 7.170 26 F -0.174 7.174 27 N -0.043 5.043 28 C -0.003 4.003 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.225 0.775 33 H 0.232 0.768 34 H 0.148 0.852 35 H 0.136 0.864 36 H 0.199 0.801 37 H 0.174 0.826 38 H 0.147 0.853 39 H 0.072 0.928 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 23.828 -8.802 3.450 25.635 hybrid contribution 0.702 -0.899 -0.793 1.389 sum 24.531 -9.701 2.657 26.513 Atomic orbital electron populations 1.70842 1.06726 1.30004 1.45678 1.26075 0.95983 1.00766 0.97378 0.84279 0.75433 0.76957 0.76650 1.20810 1.21921 1.22277 1.19840 0.95066 0.98114 1.34128 0.91119 1.44459 1.15601 1.41007 1.31349 1.22292 0.92996 0.95718 0.91913 1.23043 0.97538 0.95909 0.81007 0.91595 1.86529 1.96465 1.34317 1.19064 1.22216 0.80814 0.95015 0.98157 0.87644 1.45769 1.10521 1.06834 1.73476 1.20374 0.90290 0.83140 0.78225 1.90855 1.48673 1.50410 1.47581 1.21589 0.96997 0.76153 1.06341 1.48092 1.46022 1.05330 1.13943 1.22601 1.00019 0.92186 0.93783 1.21186 1.11370 0.96554 0.98008 1.22806 1.03749 0.94414 0.97452 1.19396 0.86809 0.81563 0.81635 1.93064 1.55226 1.95525 1.73210 1.93017 1.95196 1.62060 1.67078 1.77499 1.16716 0.96966 1.13154 1.21963 0.90303 0.95425 0.92620 0.92015 0.94583 0.93218 0.77471 0.76755 0.85228 0.86410 0.80060 0.82602 0.85323 0.92762 0.95709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.70 55.49 0.76 -26.75 16 2 C 0.00 0.06 5.29 -17.43 -0.09 -0.03 16 3 Si 1.04 25.12 26.22 -169.99 -4.46 20.67 16 4 H -0.28 -6.27 6.16 56.52 0.35 -5.92 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.34 -9.89 10.24 -15.06 -0.15 -10.04 16 8 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 9 N -0.60 -14.61 3.06 -170.07 -0.52 -15.13 16 10 C 0.10 2.03 5.82 -3.06 -0.02 2.01 16 11 C 0.09 1.36 3.94 -24.89 -0.10 1.26 16 12 H 0.07 0.88 8.00 -51.93 -0.42 0.46 16 13 O -0.56 -8.18 13.40 -35.23 -0.47 -8.65 16 14 C 0.14 2.48 3.04 -65.78 -0.20 2.28 16 15 H 0.11 2.17 7.73 -51.93 -0.40 1.77 16 16 N -0.71 -8.96 5.23 -51.73 -0.27 -9.23 16 17 C 0.50 6.77 7.86 -10.99 -0.09 6.68 16 18 O -0.50 -9.79 15.46 5.55 0.09 -9.70 16 19 C 0.11 0.95 6.99 -5.19 -0.04 0.91 16 20 N -0.35 -3.96 3.39 -62.55 -0.21 -4.17 16 21 C 0.06 0.51 11.45 -17.22 -0.20 0.31 16 22 C -0.24 -2.37 10.42 -40.01 -0.42 -2.78 16 23 C -0.02 -0.20 6.84 -82.41 -0.56 -0.76 16 24 C 0.36 3.72 5.84 36.00 0.21 3.93 16 25 F -0.19 -2.60 17.27 2.25 0.04 -2.56 16 26 F -0.19 -2.08 17.06 2.25 0.04 -2.04 16 27 N -0.22 -3.21 11.59 33.67 0.39 -2.82 16 28 C 0.12 2.56 6.93 -2.53 -0.02 2.55 16 29 H 0.27 8.25 8.73 -40.82 -0.36 7.90 16 30 H 0.04 0.77 3.84 -51.93 -0.20 0.57 16 31 H 0.05 1.11 8.06 -51.93 -0.42 0.69 16 32 H 0.38 3.78 9.12 45.56 0.42 4.20 16 33 H 0.40 3.35 8.52 -40.82 -0.35 3.01 16 34 H 0.13 0.51 8.07 -51.93 -0.42 0.09 16 35 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 38 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 350.24 15.07 5.28 5.28 Total: -1.00 -40.05 350.24 -4.96 -45.01 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -3.95 Total: 3.79 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -1.67 Total: 6.33 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 0.15 Total: -58.11 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.39 Total: -18.35 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.08 Total: -4.60 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -4.46 Total: 20.67 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -40.05 -4.96 -45.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077109073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.049 kcal (2) G-P(sol) polarization free energy of solvation -40.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds