Wall clock time and date at job start Tue Mar 31 2020 05:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34258 * 125.75535 * 2 1 4 4 C 1.38051 * 107.41737 * 180.02562 * 3 2 1 5 5 C 1.47425 * 126.41698 * 179.97438 * 4 3 2 6 6 O 1.21602 * 120.00041 * 180.02562 * 5 4 3 7 7 N 1.34782 * 119.99934 * 0.02562 * 5 4 3 8 8 C 1.46494 * 119.99807 * 180.02562 * 7 5 4 9 9 H 1.08998 * 110.91815 * 31.09537 * 8 7 5 10 10 C 1.55128 * 111.16171 * 267.16754 * 8 7 5 11 11 N 1.47431 * 104.94135 * 205.13396 * 10 8 7 12 12 C 1.36934 * 125.64289 * 204.03698 * 11 10 8 13 13 H 1.08002 * 120.00378 * 359.97438 * 12 11 10 14 14 C 1.38816 * 119.99656 * 179.97438 * 12 11 10 15 15 N 1.31617 * 120.00041 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00086 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47186 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47039 * 120.00590 * 16 14 12 19 19 H 1.48504 * 109.47183 * 240.00615 * 16 14 12 20 20 C 1.47023 * 108.70269 * 24.00496 * 11 10 8 21 21 C 1.54318 * 107.27001 * 358.93892 * 20 11 10 22 22 H 1.09000 * 110.71938 * 96.35245 * 21 20 11 23 23 O 1.42903 * 110.71964 * 219.44056 * 21 20 11 24 24 C 1.41297 * 107.16983 * 0.22416 * 4 3 2 25 25 C 1.50694 * 125.98918 * 179.74033 * 24 4 3 26 26 F 1.39898 * 109.47102 * 209.99939 * 25 24 4 27 27 F 1.39902 * 109.47486 * 330.00148 * 25 24 4 28 28 N 1.30455 * 108.01944 * 359.61578 * 24 4 3 29 29 H 1.09000 * 109.47195 * 89.99926 * 1 2 3 30 30 H 1.08997 * 109.47792 * 210.00225 * 1 2 3 31 31 H 1.09007 * 109.46973 * 330.00556 * 1 2 3 32 32 H 1.07994 * 126.29445 * 359.97438 * 3 2 1 33 33 H 0.96997 * 119.99638 * 0.02562 * 7 5 4 34 34 H 1.08998 * 110.41795 * 86.20767 * 10 8 7 35 35 H 1.08998 * 110.30064 * 324.00187 * 10 8 7 36 36 H 0.97004 * 120.00608 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.88077 * 239.52406 * 20 11 10 38 38 H 1.08994 * 110.00952 * 118.43050 * 20 11 10 39 39 H 0.96700 * 114.00311 * 296.16377 * 23 21 20 40 40 H 1.09006 * 109.46926 * 89.99762 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2494 1.0895 0.0000 4 6 3.5599 0.6552 -0.0006 5 6 4.7639 1.5059 -0.0013 6 8 5.8681 0.9968 -0.0023 7 7 4.6406 2.8481 -0.0010 8 6 5.8371 3.6935 -0.0023 9 1 6.6574 3.2061 -0.5292 10 6 6.2549 4.0748 1.4422 11 7 7.0035 5.3370 1.3007 12 6 7.9393 5.8126 2.1799 13 1 8.1821 5.2480 3.0680 14 6 8.5760 7.0205 1.9297 15 7 8.2797 7.7089 0.8477 16 14 9.8531 7.6691 3.1287 17 1 10.0033 6.7146 4.2563 18 1 11.1555 7.8195 2.4312 19 1 9.4163 8.9887 3.6515 20 6 6.5793 6.0000 0.0589 21 6 5.5330 5.0866 -0.6138 22 1 4.5222 5.4066 -0.3607 23 8 5.7152 5.0674 -2.0310 24 6 3.5310 -0.7575 -0.0062 25 6 4.7320 -1.6676 -0.0143 26 9 4.4113 -2.8570 -0.6775 27 9 5.7913 -1.0363 -0.6751 28 7 2.2825 -1.1357 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5138 32 1 1.9166 2.1169 -0.0004 33 1 3.7598 3.2542 0.0002 34 1 6.8927 3.3014 1.8702 35 1 5.3724 4.2248 2.0640 36 1 8.7243 8.5532 0.6730 37 1 7.4358 6.1319 -0.6022 38 1 6.1342 6.9686 0.2865 39 1 5.5739 5.9237 -2.4574 40 1 5.0254 -1.8912 1.0114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077147459.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:58 Heat of formation + Delta-G solvation = -64.377155 kcal Electronic energy + Delta-G solvation = -28597.748247 eV Core-core repulsion = 24086.614999 eV Total energy + Delta-G solvation = -4511.133248 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.85516 -46.82993 -41.77932 -39.31105 -37.67098 -35.05307 -34.19395 -33.93916 -31.89090 -30.76092 -28.81413 -28.29686 -27.04804 -25.75016 -24.40554 -22.79362 -21.12386 -20.56326 -20.24579 -19.98989 -18.21450 -17.51204 -17.01665 -16.92139 -16.85377 -16.39485 -15.99175 -15.91039 -15.59202 -14.74423 -14.47797 -14.22691 -14.03286 -13.77839 -13.46434 -13.37381 -13.28831 -13.17471 -12.87160 -12.70237 -12.63231 -12.40047 -12.04274 -11.55569 -11.47466 -11.25789 -11.22361 -10.87797 -10.82298 -10.13160 -10.00279 -9.90108 -9.83405 -9.73011 -9.31272 -9.08980 -8.76984 -8.59916 -6.90958 -5.76309 -3.10586 1.15160 1.62016 1.79857 3.29360 3.39100 3.44670 3.46938 3.48886 3.51351 3.89896 4.18499 4.28308 4.44844 4.61169 4.62975 4.65285 4.86099 4.88789 4.94728 5.07836 5.23172 5.36876 5.44716 5.58881 5.67076 5.76039 5.83385 6.11157 6.14229 6.31396 6.55000 6.64303 6.91742 7.01060 7.32411 7.47226 7.71267 7.76799 8.12627 8.17593 8.49490 9.15338 9.75524 10.38468 11.35536 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.018125 B = 0.002918 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.491057 B = 9592.781144 C =10169.937333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.354 5.354 3 C 0.101 3.899 4 C -0.253 4.253 5 C 0.584 3.416 6 O -0.518 6.518 7 N -0.712 5.712 8 C 0.141 3.859 9 H 0.108 0.892 10 C 0.131 3.869 11 N -0.600 5.600 12 C -0.227 4.227 13 H 0.082 0.918 14 C -0.008 4.008 15 N -0.924 5.924 16 Si 0.915 3.085 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.291 1.291 20 C 0.153 3.847 21 C 0.069 3.931 22 H 0.055 0.945 23 O -0.563 6.563 24 C 0.050 3.950 25 C 0.356 3.644 26 F -0.198 7.198 27 F -0.157 7.157 28 N -0.262 5.262 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.191 0.809 33 H 0.391 0.609 34 H 0.051 0.949 35 H 0.023 0.977 36 H 0.252 0.748 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.376 0.624 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.892 -12.840 -2.599 22.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.134 5.134 3 C -0.050 4.050 4 C -0.268 4.268 5 C 0.369 3.631 6 O -0.393 6.393 7 N -0.362 5.362 8 C 0.036 3.964 9 H 0.126 0.874 10 C 0.003 3.997 11 N -0.328 5.328 12 C -0.355 4.355 13 H 0.099 0.901 14 C -0.204 4.204 15 N -0.572 5.572 16 Si 0.745 3.255 17 H -0.204 1.204 18 H -0.217 1.217 19 H -0.218 1.218 20 C 0.028 3.972 21 C 0.008 3.992 22 H 0.073 0.927 23 O -0.368 6.368 24 C -0.119 4.119 25 C 0.300 3.700 26 F -0.179 7.179 27 F -0.138 7.138 28 N -0.084 5.084 29 H 0.102 0.898 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.208 0.792 33 H 0.225 0.775 34 H 0.069 0.931 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.223 0.777 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.756 -14.668 -2.491 23.940 hybrid contribution 0.365 2.066 0.363 2.129 sum -18.391 -12.602 -2.127 22.396 Atomic orbital electron populations 1.22089 0.72854 1.05350 1.04284 1.48377 1.07346 1.03496 1.54154 1.23164 0.90013 0.93991 0.97802 1.20242 0.93437 0.92664 1.20427 1.17137 0.87570 0.81675 0.76684 1.90891 1.26289 1.73093 1.49034 1.45682 1.09496 1.05409 1.75622 1.22275 0.87497 0.88971 0.97689 0.87439 1.21883 0.95262 0.89834 0.92718 1.44247 1.45606 1.19203 1.23713 1.19143 1.12896 1.02538 1.00946 0.90063 1.24814 1.00158 0.97433 0.98011 1.69929 1.45220 1.15628 1.26380 0.85997 0.81017 0.78497 0.79974 1.20405 1.21661 1.21767 1.21823 0.94505 0.92889 0.88025 1.23461 0.98578 0.96118 0.81005 0.92696 1.86483 1.94082 1.36482 1.19714 1.22969 0.93874 0.93785 1.01240 1.19382 0.80657 0.75933 0.94006 1.93013 1.93239 1.47820 1.83833 1.93224 1.55863 1.81613 1.83103 1.77167 1.00451 1.07504 1.23298 0.89840 0.88581 0.88588 0.79232 0.77520 0.93077 0.95980 0.93724 0.92106 0.93367 0.77736 0.85328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.34 11.44 59.84 0.68 1.02 16 2 N -0.35 -3.06 3.98 -67.60 -0.27 -3.33 16 3 C 0.10 0.87 10.99 -16.56 -0.18 0.69 16 4 C -0.25 -3.22 6.09 -105.06 -0.64 -3.86 16 5 C 0.58 9.19 7.77 -12.52 -0.10 9.10 16 6 O -0.52 -10.11 12.90 5.28 0.07 -10.04 16 7 N -0.71 -10.30 5.20 -52.69 -0.27 -10.58 16 8 C 0.14 2.61 3.16 -65.67 -0.21 2.41 16 9 H 0.11 2.34 7.54 -51.93 -0.39 1.95 16 10 C 0.13 2.73 6.94 -2.41 -0.02 2.72 16 11 N -0.60 -15.16 3.40 -169.94 -0.58 -15.74 16 12 C -0.23 -6.30 10.28 -15.06 -0.15 -6.45 16 13 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 14 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 15 N -0.92 -26.57 10.31 55.49 0.57 -26.00 16 16 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 20 C 0.15 3.57 5.15 -3.07 -0.02 3.56 16 21 C 0.07 1.23 3.97 -24.90 -0.10 1.13 16 22 H 0.06 0.84 8.00 -51.93 -0.42 0.43 16 23 O -0.56 -9.63 13.39 -35.23 -0.47 -10.10 16 24 C 0.05 0.66 6.89 -82.02 -0.56 0.10 16 25 C 0.36 4.62 5.65 36.00 0.20 4.82 16 26 F -0.20 -2.64 17.27 2.25 0.04 -2.60 16 27 F -0.16 -2.59 13.59 2.25 0.03 -2.56 16 28 N -0.26 -3.17 12.43 33.90 0.42 -2.75 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.10 0.09 8.14 -51.92 -0.42 -0.34 16 32 H 0.19 0.82 7.46 -52.49 -0.39 0.43 16 33 H 0.39 4.21 7.49 -40.82 -0.31 3.90 16 34 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 37 H 0.06 1.61 7.30 -51.93 -0.38 1.23 16 38 H 0.05 1.21 7.51 -51.93 -0.39 0.82 16 39 H 0.38 4.87 9.12 45.56 0.42 5.29 16 40 H 0.13 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 346.55 15.07 5.22 5.22 Total: -1.00 -37.14 346.55 -5.39 -42.53 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -3.94 Total: 4.09 kcal Atomic # 6 Polarization: 16.08 SS G_CDS: -1.18 Total: 14.90 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.13 Total: -58.39 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.40 Total: -20.14 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.07 Total: -5.16 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -37.14 -5.39 -42.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077147459.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.851 kcal (2) G-P(sol) polarization free energy of solvation -37.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds