Wall clock time and date at job start Tue Mar 31 2020 04:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.40365 * 126.64751 * 2 1 4 4 C 1.35118 * 107.11580 * 180.02562 * 3 2 1 5 5 C 1.50706 * 125.61814 * 180.02562 * 4 3 2 6 6 F 1.39899 * 109.46852 * 299.99788 * 5 4 3 7 7 F 1.39901 * 109.46943 * 59.99949 * 5 4 3 8 8 O 1.33933 * 108.76754 * 359.75264 * 4 3 2 9 9 C 1.34908 * 109.38444 * 0.40509 * 8 4 3 10 10 C 1.46656 * 125.98817 * 179.86257 * 9 8 4 11 11 O 1.21703 * 120.00109 * 179.68908 * 10 9 8 12 12 N 1.34779 * 120.00007 * 359.68789 * 10 9 8 13 13 C 1.46506 * 119.99755 * 179.97438 * 12 10 9 14 14 H 1.09003 * 110.64136 * 31.86134 * 13 12 10 15 15 C 1.54334 * 110.99950 * 268.78147 * 13 12 10 16 16 N 1.47021 * 107.26217 * 219.60246 * 15 13 12 17 17 C 1.36942 * 125.64753 * 178.85322 * 16 15 13 18 18 H 1.07999 * 119.99808 * 344.53778 * 17 16 15 19 19 C 1.38811 * 119.99896 * 164.54046 * 17 16 15 20 20 N 1.31619 * 119.99999 * 350.13813 * 19 17 16 21 21 Si 1.86796 * 119.99714 * 169.86832 * 19 17 16 22 22 H 1.48502 * 109.47237 * 265.42801 * 21 19 17 23 23 H 1.48494 * 109.47395 * 25.43286 * 21 19 17 24 24 H 1.48503 * 109.47346 * 145.43375 * 21 19 17 25 25 C 1.47428 * 108.70435 * 358.59014 * 16 15 13 26 26 C 1.54907 * 104.83347 * 24.35359 * 25 16 15 27 27 H 1.08998 * 110.99967 * 81.06533 * 26 25 16 28 28 O 1.42894 * 111.00446 * 204.87959 * 26 25 16 29 29 H 1.09007 * 109.46945 * 269.97954 * 1 2 3 30 30 H 1.08998 * 109.46959 * 29.97632 * 1 2 3 31 31 H 1.09000 * 109.47149 * 149.97721 * 1 2 3 32 32 H 1.08002 * 126.44151 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.47113 * 179.97438 * 5 4 3 34 34 H 0.96990 * 119.99982 * 0.02562 * 12 10 9 35 35 H 1.08998 * 109.99077 * 100.13440 * 15 13 12 36 36 H 1.08996 * 109.78145 * 338.95929 * 15 13 12 37 37 H 0.97008 * 119.99465 * 179.72105 * 20 19 17 38 38 H 1.08993 * 110.36798 * 143.19699 * 25 16 15 39 39 H 1.09007 * 110.36022 * 265.51517 * 25 16 15 40 40 H 0.96695 * 114.00229 * 298.54685 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3449 1.1262 0.0000 4 6 3.6183 0.6744 -0.0006 5 6 4.8551 1.5356 -0.0002 6 9 4.8607 2.3440 -1.1420 7 9 4.8611 2.3425 1.1426 8 8 3.6005 -0.6648 0.0045 9 6 2.3220 -1.0955 -0.0005 10 6 1.8843 -2.4953 -0.0002 11 8 0.6967 -2.7614 0.0006 12 7 2.7971 -3.4868 -0.0008 13 6 2.3598 -4.8851 0.0000 14 1 1.4177 -4.9933 -0.5374 15 6 2.2254 -5.4216 1.4408 16 7 2.7316 -6.8020 1.4413 17 6 2.8063 -7.6242 2.5339 18 1 2.7189 -7.2108 3.5278 19 6 2.9945 -8.9890 2.3638 20 7 2.9075 -9.5207 1.1629 21 14 3.3788 -10.0696 3.8382 22 1 4.8496 -10.2324 3.9627 23 1 2.8449 -9.4347 5.0698 24 1 2.7474 -11.4011 3.6540 25 6 3.1395 -7.1564 0.0697 26 6 3.4506 -5.8017 -0.6141 27 1 4.4487 -5.4515 -0.3511 28 8 3.3015 -5.8975 -2.0320 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 2.0307 2.1595 0.0004 33 1 5.7405 0.8999 -0.0004 34 1 3.7436 -3.2747 -0.0011 35 1 1.1792 -5.4104 1.7466 36 1 2.8187 -4.8089 2.1195 37 1 3.0430 -10.4738 1.0436 38 1 4.0298 -7.7849 0.0891 39 1 2.3263 -7.6650 -0.4484 40 1 3.8986 -6.5341 -2.4482 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077170456.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:02 Heat of formation + Delta-G solvation = -138.600645 kcal Electronic energy + Delta-G solvation = -28134.751895 eV Core-core repulsion = 23588.107324 eV Total energy + Delta-G solvation = -4546.644571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.122 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -49.57738 -47.58057 -43.15298 -39.71818 -37.92197 -35.20593 -34.77051 -33.97018 -32.11512 -31.60515 -28.77915 -28.04701 -27.47786 -26.47186 -24.45482 -22.31542 -21.86223 -20.86352 -20.24443 -20.09845 -18.47153 -17.94894 -17.73034 -17.58668 -17.08974 -16.82043 -16.59156 -15.80027 -14.99249 -14.75600 -14.57845 -14.41314 -14.08975 -13.93272 -13.92841 -13.74825 -13.54197 -13.35681 -13.26860 -12.98371 -12.89226 -12.47129 -12.37930 -12.13410 -11.64513 -11.56482 -11.36257 -11.01372 -10.89151 -10.30293 -10.17578 -10.11065 -10.05570 -9.90454 -9.45859 -9.18855 -8.85972 -8.71511 -6.91730 -5.87101 -3.23552 0.57435 1.80836 1.83886 2.96881 3.03536 3.33769 3.39785 3.41661 3.42629 3.65760 4.07250 4.33648 4.36329 4.39193 4.50663 4.62521 4.94244 5.12613 5.13177 5.31243 5.33869 5.50257 5.54501 5.55236 5.63858 5.73560 5.81663 5.97251 6.01307 6.10872 6.29237 6.38185 6.60234 6.78652 7.11476 7.37279 7.45899 7.63870 7.99303 8.03595 8.13162 9.04774 9.66439 10.32548 11.26010 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.017673 B = 0.002623 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.969550 B =10672.222540 C =10886.295510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.096 4.096 3 C -0.156 4.156 4 C -0.082 4.082 5 C 0.361 3.639 6 F -0.183 7.183 7 F -0.183 7.183 8 O -0.145 6.145 9 C -0.044 4.044 10 C 0.601 3.399 11 O -0.508 6.508 12 N -0.700 5.700 13 C 0.141 3.859 14 H 0.107 0.893 15 C 0.128 3.872 16 N -0.596 5.596 17 C -0.235 4.235 18 H 0.078 0.922 19 C -0.003 4.003 20 N -0.915 5.915 21 Si 0.914 3.086 22 H -0.288 1.288 23 H -0.279 1.279 24 H -0.290 1.290 25 C 0.151 3.849 26 C 0.067 3.933 27 H 0.063 0.937 28 O -0.564 6.564 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.163 0.837 33 H 0.135 0.865 34 H 0.403 0.597 35 H 0.037 0.963 36 H 0.031 0.969 37 H 0.255 0.745 38 H 0.067 0.933 39 H 0.046 0.954 40 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.978 21.137 -5.193 22.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.099 4.099 3 C -0.176 4.176 4 C -0.135 4.135 5 C 0.307 3.693 6 F -0.164 7.164 7 F -0.164 7.164 8 O -0.041 6.041 9 C -0.097 4.097 10 C 0.386 3.614 11 O -0.385 6.385 12 N -0.349 5.349 13 C 0.036 3.964 14 H 0.125 0.875 15 C 0.001 3.999 16 N -0.324 5.324 17 C -0.364 4.364 18 H 0.096 0.904 19 C -0.200 4.200 20 N -0.561 5.561 21 Si 0.744 3.256 22 H -0.215 1.215 23 H -0.204 1.204 24 H -0.216 1.216 25 C 0.025 3.975 26 C 0.006 3.994 27 H 0.080 0.920 28 O -0.369 6.369 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.180 0.820 33 H 0.152 0.848 34 H 0.238 0.762 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 2.939 20.988 -5.043 21.785 hybrid contribution 1.044 -0.666 0.678 1.412 sum 3.983 20.322 -4.365 21.164 Atomic orbital electron populations 1.20467 0.87419 1.03967 1.03328 1.20677 0.98159 0.90340 1.00686 1.21583 0.91033 1.00759 1.04209 1.22749 0.97154 0.82339 1.11229 1.19082 0.95239 0.83112 0.71874 1.93076 1.97344 1.75307 1.50701 1.93080 1.97341 1.75381 1.50605 1.83956 1.29068 1.20340 1.70774 1.22272 0.80571 0.95373 1.11481 1.16449 0.86059 0.81394 0.77499 1.90885 1.15468 1.81781 1.50400 1.45898 1.09574 1.06260 1.73174 1.22118 0.99069 0.77463 0.97711 0.87463 1.21664 0.97989 0.87952 0.92249 1.44249 1.73018 1.09645 1.05485 1.19029 1.44324 0.87660 0.85346 0.90410 1.24930 1.01627 0.96411 0.97047 1.69939 1.54241 1.11459 1.20452 0.86077 0.77967 0.79948 0.81626 1.21490 1.20405 1.21622 1.21976 1.00187 0.90387 0.84965 1.23582 0.96462 0.98639 0.80690 0.91965 1.86421 1.65235 1.65450 1.19821 0.90406 0.91266 0.89018 0.81983 0.84754 0.76203 0.94486 0.95111 0.93493 0.91501 0.93590 0.77406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 9.82 36.01 0.35 -0.66 16 2 C -0.10 -1.14 6.20 -104.43 -0.65 -1.79 16 3 C -0.16 -1.58 10.73 -39.89 -0.43 -2.00 16 4 C -0.08 -0.81 6.75 -35.42 -0.24 -1.05 16 5 C 0.36 2.63 5.76 36.01 0.21 2.83 16 6 F -0.18 -1.53 17.32 2.25 0.04 -1.49 16 7 F -0.18 -1.56 17.32 2.25 0.04 -1.52 16 8 O -0.15 -1.67 10.40 5.00 0.05 -1.62 16 9 C -0.04 -0.58 7.13 -36.80 -0.26 -0.85 16 10 C 0.60 9.35 7.79 -12.86 -0.10 9.25 16 11 O -0.51 -9.19 14.38 5.19 0.07 -9.11 16 12 N -0.70 -10.56 5.11 -53.33 -0.27 -10.83 16 13 C 0.14 2.56 3.04 -66.09 -0.20 2.36 16 14 H 0.11 2.15 7.55 -51.93 -0.39 1.76 16 15 C 0.13 2.70 7.01 -3.06 -0.02 2.68 16 16 N -0.60 -14.80 3.39 -170.07 -0.58 -15.38 16 17 C -0.24 -6.41 10.21 -15.06 -0.15 -6.56 16 18 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 19 C 0.00 -0.07 5.38 -17.43 -0.09 -0.16 16 20 N -0.92 -26.00 10.92 55.49 0.61 -25.40 16 21 Si 0.91 21.48 29.57 -169.99 -5.03 16.45 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.15 3.44 5.09 -2.53 -0.01 3.42 16 26 C 0.07 1.19 4.06 -24.58 -0.10 1.09 16 27 H 0.06 1.01 8.01 -51.93 -0.42 0.59 16 28 O -0.56 -9.23 13.47 -35.23 -0.47 -9.71 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 1.14 6.45 -51.93 -0.33 0.80 16 32 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.14 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.40 5.14 8.32 -40.82 -0.34 4.80 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 37 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.07 1.63 7.31 -51.93 -0.38 1.25 16 39 H 0.05 1.17 7.95 -51.93 -0.41 0.76 16 40 H 0.38 4.66 9.11 45.56 0.42 5.08 16 LS Contribution 351.67 15.07 5.30 5.30 Total: -1.00 -32.24 351.67 -5.87 -38.12 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -3.94 Total: 6.64 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -1.70 Total: 8.56 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.24 Total: -51.61 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.35 Total: -20.44 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.08 Total: -3.01 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.24 -5.87 -38.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077170456.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.485 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds