Wall clock time and date at job start Tue Mar 31 2020 05:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00456 * 2 1 4 4 H 1.48507 * 109.47081 * 264.98937 * 3 2 1 5 5 H 1.48502 * 109.47308 * 144.98913 * 3 2 1 6 6 H 1.48499 * 109.47100 * 24.98684 * 3 2 1 7 7 C 1.38812 * 119.99440 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00054 * 187.37604 * 7 2 1 9 9 N 1.36941 * 120.00565 * 7.38012 * 7 2 1 10 10 C 1.47021 * 125.64137 * 6.32996 * 9 7 2 11 11 C 1.54340 * 107.26384 * 178.85109 * 10 9 7 12 12 H 1.09001 * 110.50937 * 96.45359 * 11 10 9 13 13 O 1.42896 * 111.00357 * 219.60371 * 11 10 9 14 14 C 1.55153 * 103.01975 * 338.14806 * 11 10 9 15 15 H 1.09002 * 111.00288 * 277.22868 * 14 11 10 16 16 N 1.46497 * 111.03951 * 153.39185 * 14 11 10 17 17 C 1.34773 * 120.00358 * 161.32679 * 16 14 11 18 18 O 1.21571 * 120.00114 * 0.02562 * 17 16 14 19 19 C 1.47707 * 120.00052 * 180.02562 * 17 16 14 20 20 C 1.41507 * 126.51658 * 179.71167 * 19 17 16 21 21 C 1.35366 * 105.50210 * 179.84381 * 20 19 17 22 22 N 1.35032 * 107.22613 * 0.41520 * 21 20 19 23 23 C 1.46507 * 124.88352 * 179.72535 * 22 21 20 24 24 C 1.53002 * 109.47252 * 125.02515 * 23 22 21 25 25 F 1.39893 * 109.47045 * 175.00102 * 24 23 22 26 26 F 1.39905 * 109.47095 * 295.00077 * 24 23 22 27 27 N 1.28462 * 110.23379 * 359.72346 * 22 21 20 28 28 C 1.47414 * 125.65304 * 186.64665 * 9 7 2 29 29 H 0.97004 * 119.99432 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.88851 * 298.40020 * 10 9 7 31 31 H 1.09007 * 109.88284 * 59.56743 * 10 9 7 32 32 H 0.96698 * 114.00012 * 293.78373 * 13 11 10 33 33 H 0.97001 * 119.99529 * 341.33230 * 16 14 11 34 34 H 1.08000 * 127.24783 * 0.02562 * 20 19 17 35 35 H 1.08000 * 126.38546 * 180.14229 * 21 20 19 36 36 H 1.08994 * 109.47160 * 245.02532 * 23 22 21 37 37 H 1.09004 * 109.46924 * 5.02668 * 23 22 21 38 38 H 1.09001 * 109.46701 * 54.99757 * 24 23 22 39 39 H 1.09003 * 110.36883 * 322.92426 * 28 9 7 40 40 H 1.09002 * 110.37021 * 85.24693 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6037 1.9851 -1.3948 5 1 3.4909 1.4729 0.8033 6 1 1.3988 2.6809 0.5914 7 6 2.0101 -1.2022 0.0005 8 1 3.0835 -1.2061 0.1206 9 7 1.3339 -2.3833 -0.1513 10 6 -0.0986 -2.5176 -0.4534 11 6 -0.4047 -4.0266 -0.5603 12 1 -0.7972 -4.4045 0.3838 13 8 -1.3183 -4.2896 -1.6271 14 6 0.9858 -4.6447 -0.8634 15 1 1.2192 -4.5792 -1.9261 16 7 1.0577 -6.0317 -0.3974 17 6 2.0068 -6.8570 -0.8816 18 8 2.8036 -6.4503 -1.7048 19 6 2.0789 -8.2556 -0.4122 20 6 3.0092 -9.2369 -0.8293 21 6 2.6935 -10.3539 -0.1328 22 7 1.6311 -10.0536 0.6446 23 6 0.9680 -10.9899 1.5556 24 6 0.9335 -10.3932 2.9641 25 9 0.2014 -11.2342 3.8090 26 9 2.2396 -10.2670 3.4492 27 7 1.2854 -8.8286 0.4706 28 6 1.9203 -3.7306 -0.0323 29 1 -0.4849 0.8401 0.0004 30 1 -0.6897 -2.0733 0.3473 31 1 -0.3254 -2.0274 -1.4002 32 1 -2.2025 -3.9242 -1.4867 33 1 0.4221 -6.3561 0.2596 34 1 3.8054 -9.1187 -1.5493 35 1 3.1948 -11.3087 -0.1916 36 1 -0.0506 -11.1708 1.2126 37 1 1.5181 -11.9309 1.5731 38 1 0.4617 -9.4112 2.9310 39 1 2.9289 -3.7432 -0.4456 40 1 1.9327 -4.0483 1.0103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077187433.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:22 Heat of formation + Delta-G solvation = -68.802731 kcal Electronic energy + Delta-G solvation = -27992.230827 eV Core-core repulsion = 23480.905672 eV Total energy + Delta-G solvation = -4511.325155 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.57887 -47.58067 -42.96356 -39.46604 -37.74362 -35.06250 -34.57194 -34.02790 -31.76853 -31.00659 -29.70171 -28.32287 -27.06160 -25.10482 -24.19777 -22.67383 -21.85920 -20.59693 -20.35286 -19.84513 -18.62635 -18.13664 -17.68028 -17.44795 -16.98048 -16.72979 -16.32751 -15.77456 -15.49766 -14.73943 -14.49880 -14.41423 -14.32230 -14.12388 -13.92601 -13.92071 -13.60732 -13.34277 -13.04516 -12.97294 -12.66834 -12.42994 -12.04982 -11.83203 -11.51046 -11.23000 -11.17700 -10.90589 -10.79604 -10.18804 -10.03125 -9.87514 -9.77706 -9.58900 -9.39101 -9.34055 -8.81156 -8.61057 -6.87965 -5.73738 -3.09815 1.31660 1.78703 1.91408 2.90247 3.28375 3.41937 3.46711 3.47694 3.48407 3.61818 3.70305 4.04633 4.23890 4.41557 4.45648 4.59657 4.63869 4.65755 5.01368 5.20118 5.38715 5.45599 5.52800 5.59450 5.69110 5.84034 6.07209 6.14041 6.15832 6.30870 6.54383 6.65810 6.90819 7.32159 7.43309 7.49569 7.72975 7.79629 8.11353 8.19810 8.38261 9.16516 9.77301 10.40743 11.36788 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.016986 B = 0.002586 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.994836 B =10826.593497 C =11098.080596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.915 3.085 4 H -0.287 1.287 5 H -0.281 1.281 6 H -0.291 1.291 7 C -0.228 4.228 8 H 0.081 0.919 9 N -0.599 5.599 10 C 0.149 3.851 11 C 0.071 3.929 12 H 0.059 0.941 13 O -0.563 6.563 14 C 0.139 3.861 15 H 0.104 0.896 16 N -0.700 5.700 17 C 0.601 3.399 18 O -0.527 6.527 19 C 0.006 3.994 20 C -0.174 4.174 21 C -0.010 4.010 22 N -0.292 5.292 23 C 0.078 3.922 24 C 0.254 3.746 25 F -0.194 7.194 26 F -0.196 7.196 27 N -0.269 5.269 28 C 0.130 3.870 29 H 0.253 0.747 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.377 0.623 33 H 0.402 0.598 34 H 0.167 0.833 35 H 0.185 0.815 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.053 0.947 40 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.468 -25.810 3.761 26.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.206 1.206 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.098 0.902 9 N -0.326 5.326 10 C 0.024 3.976 11 C 0.011 3.989 12 H 0.077 0.923 13 O -0.368 6.368 14 C 0.034 3.966 15 H 0.122 0.878 16 N -0.350 5.350 17 C 0.384 3.616 18 O -0.401 6.401 19 C -0.155 4.155 20 C -0.201 4.201 21 C -0.151 4.151 22 N -0.080 5.080 23 C -0.044 4.044 24 C 0.199 3.801 25 F -0.175 7.175 26 F -0.177 7.177 27 N -0.104 5.104 28 C 0.002 3.998 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.223 0.777 33 H 0.237 0.763 34 H 0.185 0.815 35 H 0.202 0.798 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.071 0.929 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -1.379 -25.465 3.721 25.773 hybrid contribution 0.299 0.624 0.260 0.738 sum -1.080 -24.842 3.981 25.182 Atomic orbital electron populations 1.69911 1.04974 1.25216 1.56913 1.24813 0.95733 0.97812 1.02041 0.86087 0.78561 0.83070 0.77755 1.21453 1.20636 1.21715 1.19086 0.91051 0.82319 1.43136 0.90158 1.44238 1.05016 0.99899 1.83460 1.21873 0.86491 0.88009 1.01276 1.23432 0.88485 0.98461 0.88568 0.92324 1.86462 1.24872 1.80046 1.45460 1.22289 0.95055 0.78629 1.00648 0.87779 1.45767 1.32958 1.11697 1.44608 1.16835 0.81274 0.82352 0.81113 1.90824 1.40719 1.75583 1.32963 1.22117 0.97568 0.96231 0.99616 1.21855 1.02817 0.91119 1.04345 1.22879 0.93001 1.01921 0.97308 1.45027 1.23588 1.07934 1.31491 1.22928 1.02513 0.91907 0.87094 1.22101 0.76631 0.95594 0.85750 1.93032 1.77130 1.74323 1.73009 1.93052 1.38515 1.96749 1.89396 1.73441 1.24523 0.93202 1.19184 1.21853 0.96097 0.85668 0.96159 0.93682 0.91583 0.93651 0.77651 0.76284 0.81542 0.79817 0.85609 0.85485 0.85389 0.92911 0.95820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.80 10.48 55.49 0.58 -26.22 16 2 C -0.01 -0.22 5.45 -17.43 -0.09 -0.31 16 3 Si 0.91 22.27 29.56 -169.99 -5.02 17.25 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.23 -6.44 10.26 -15.06 -0.15 -6.59 16 8 H 0.08 2.21 7.84 -52.48 -0.41 1.79 16 9 N -0.60 -15.53 3.39 -170.06 -0.58 -16.10 16 10 C 0.15 3.56 5.21 -3.06 -0.02 3.54 16 11 C 0.07 1.32 3.94 -24.89 -0.10 1.22 16 12 H 0.06 0.98 8.00 -51.93 -0.42 0.56 16 13 O -0.56 -9.75 13.40 -35.23 -0.47 -10.23 16 14 C 0.14 2.69 3.04 -65.79 -0.20 2.49 16 15 H 0.10 2.26 7.73 -51.93 -0.40 1.86 16 16 N -0.70 -11.31 5.23 -52.72 -0.28 -11.59 16 17 C 0.60 10.06 7.82 -12.39 -0.10 9.97 16 18 O -0.53 -10.56 16.67 5.30 0.09 -10.47 16 19 C 0.01 0.09 7.13 -82.77 -0.59 -0.50 16 20 C -0.17 -1.90 10.81 -39.36 -0.43 -2.33 16 21 C -0.01 -0.07 11.40 -17.17 -0.20 -0.27 16 22 N -0.29 -2.38 3.39 -61.33 -0.21 -2.59 16 23 C 0.08 0.33 6.59 -4.04 -0.03 0.30 16 24 C 0.25 1.55 5.37 37.16 0.20 1.75 16 25 F -0.19 -1.31 17.34 2.25 0.04 -1.27 16 26 F -0.20 -1.77 17.32 2.25 0.04 -1.73 16 27 N -0.27 -3.03 11.27 33.42 0.38 -2.66 16 28 C 0.13 2.85 6.92 -2.54 -0.02 2.83 16 29 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.07 1.71 6.99 -51.93 -0.36 1.34 16 31 H 0.05 1.20 7.83 -51.93 -0.41 0.80 16 32 H 0.38 4.91 9.12 45.56 0.42 5.32 16 33 H 0.40 5.58 8.24 -40.82 -0.34 5.25 16 34 H 0.17 1.68 8.06 -52.49 -0.42 1.25 16 35 H 0.18 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.13 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.13 0.20 8.04 -51.93 -0.42 -0.22 16 38 H 0.13 0.75 7.96 -51.93 -0.41 0.34 16 39 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 353.92 15.07 5.33 5.33 Total: -1.00 -35.88 353.92 -5.81 -41.69 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -4.00 Total: 6.49 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: -1.72 Total: 12.10 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -0.10 Total: -59.16 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.38 Total: -20.70 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.08 Total: -3.00 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.88 -5.81 -41.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077187433.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.108 kcal (2) G-P(sol) polarization free energy of solvation -35.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds