Wall clock time and date at job start Tue Mar 31 2020 05:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 120.00099 * 2 1 4 4 H 1.48499 * 109.46962 * 240.00110 * 3 2 1 5 5 H 1.48497 * 109.47031 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46861 * 120.00090 * 3 2 1 7 7 C 1.38815 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99800 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64868 * 0.04572 * 9 7 2 11 11 C 1.55120 * 104.94315 * 203.96681 * 10 9 7 12 12 H 1.08995 * 110.93588 * 81.21730 * 11 10 9 13 13 O 1.42909 * 111.16098 * 205.13237 * 11 10 9 14 14 C 1.55147 * 101.48618 * 323.22059 * 11 10 9 15 15 H 1.08999 * 110.72440 * 276.83010 * 14 11 10 16 16 N 1.46502 * 110.72204 * 153.73193 * 14 11 10 17 17 C 1.34771 * 120.00296 * 157.44113 * 16 14 11 18 18 O 1.21285 * 119.99824 * 0.02562 * 17 16 14 19 19 C 1.50698 * 120.00150 * 180.02562 * 17 16 14 20 20 C 1.50700 * 109.47254 * 180.02562 * 19 17 16 21 21 C 1.34002 * 126.90711 * 265.02275 * 20 19 17 22 22 O 1.34444 * 110.15670 * 179.97438 * 21 20 19 23 23 C 1.34812 * 110.88889 * 0.02562 * 22 21 20 24 24 C 1.38942 * 133.49744 * 180.02562 * 23 22 21 25 25 C 1.37842 * 119.81955 * 179.97438 * 24 23 22 26 26 C 1.38749 * 120.68566 * 359.97438 * 25 24 23 27 27 C 1.36734 * 120.41396 * 0.26667 * 26 25 24 28 28 C 1.39406 * 119.71990 * 359.48609 * 27 26 25 29 29 C 1.47018 * 125.64736 * 180.02562 * 9 7 2 30 30 H 0.97001 * 120.00066 * 359.97438 * 1 2 3 31 31 H 1.08999 * 110.36888 * 322.93594 * 10 9 7 32 32 H 1.09003 * 110.36593 * 85.14263 * 10 9 7 33 33 H 0.96703 * 113.99485 * 292.17087 * 13 11 10 34 34 H 0.97005 * 119.99693 * 337.44743 * 16 14 11 35 35 H 1.08997 * 109.47399 * 60.00424 * 19 17 16 36 36 H 1.09008 * 109.47110 * 299.99962 * 19 17 16 37 37 H 1.08002 * 124.91832 * 0.02562 * 21 20 19 38 38 H 1.07998 * 120.09021 * 359.97349 * 24 23 22 39 39 H 1.08003 * 119.65940 * 180.02562 * 25 24 23 40 40 H 1.08002 * 119.78919 * 179.97438 * 26 25 24 41 41 H 1.08003 * 120.14283 * 179.71962 * 27 26 25 42 42 H 1.09002 * 109.88696 * 59.55909 * 29 9 7 43 43 H 1.09005 * 110.01252 * 298.46434 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5332 -0.0010 11 6 -0.4050 -3.9353 0.6080 12 1 -0.3586 -3.9022 1.6965 13 8 -1.6579 -4.4624 0.1666 14 6 0.7782 -4.7524 0.0255 15 1 0.5481 -5.1001 -0.9816 16 7 1.1082 -5.8815 0.8988 17 6 1.7582 -6.9516 0.4002 18 8 2.0704 -6.9798 -0.7714 19 6 2.0971 -8.1132 1.2984 20 6 2.8174 -9.1706 0.5021 21 6 2.2738 -10.2453 -0.0856 22 8 3.2247 -10.9638 -0.7076 23 6 4.4361 -10.3921 -0.5551 24 6 5.7128 -10.7260 -0.9900 25 6 6.7812 -9.9186 -0.6633 26 6 6.5963 -8.7725 0.0966 27 6 5.3488 -8.4288 0.5385 28 6 4.2554 -9.2302 0.2137 29 6 1.9317 -3.7274 -0.0005 30 1 -0.4850 0.8400 0.0004 31 1 -0.5995 -1.7590 0.6146 32 1 -0.5273 -2.4846 -1.0193 33 1 -2.4270 -3.9839 0.5052 34 1 0.8587 -5.8588 1.8359 35 1 1.1799 -8.5319 1.7127 36 1 2.7388 -7.7699 2.1099 37 1 1.2238 -10.4971 -0.0634 38 1 5.8676 -11.6157 -1.5823 39 1 7.7724 -10.1804 -1.0030 40 1 7.4437 -8.1506 0.3445 41 1 5.2106 -7.5381 1.1336 42 1 2.5577 -3.8511 0.8832 43 1 2.5303 -3.8660 -0.9010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077896047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:16 Heat of formation + Delta-G solvation = -21.495211 kcal Electronic energy + Delta-G solvation = -27535.596283 eV Core-core repulsion = 23548.259314 eV Total energy + Delta-G solvation = -3987.336968 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.56597 -39.65178 -37.96360 -37.81364 -35.10879 -34.10431 -33.93252 -31.77865 -30.72203 -30.05664 -28.77918 -27.83000 -26.68486 -24.40508 -23.43734 -22.42598 -21.36879 -20.66948 -20.03777 -19.74958 -17.50858 -17.38244 -17.19406 -16.93101 -16.62289 -16.01103 -15.90776 -15.59032 -15.02035 -14.75567 -14.26622 -13.98581 -13.92852 -13.75318 -13.27523 -13.22853 -12.93856 -12.75263 -12.40833 -12.39740 -12.20712 -11.93884 -11.70880 -11.51492 -11.27409 -11.03171 -10.99692 -10.83662 -10.24608 -10.20768 -9.94453 -9.76449 -9.71473 -9.28157 -8.77342 -8.74070 -8.73747 -8.26481 -6.94327 -5.74262 -3.16757 0.80459 1.25412 2.16038 2.68401 2.81178 3.36020 3.38804 3.41388 3.43223 3.64577 4.30966 4.38418 4.40003 4.59328 4.70395 4.82525 4.85697 5.02876 5.17765 5.24554 5.26857 5.32075 5.33467 5.39833 5.46769 5.60595 5.64561 5.77563 5.84281 6.06950 6.09219 6.14007 6.17813 6.28034 6.33702 6.47350 6.50793 6.66034 6.91547 7.04344 7.29351 7.50107 7.66221 7.73522 8.07024 8.23232 8.43351 9.11829 9.72290 10.34772 11.29957 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016241 B = 0.002744 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.646508 B =10199.888583 C =11600.854582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.010 4.010 3 Si 0.918 3.082 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.224 4.224 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.130 3.870 11 C 0.067 3.933 12 H 0.062 0.938 13 O -0.566 6.566 14 C 0.142 3.858 15 H 0.099 0.901 16 N -0.716 5.716 17 C 0.510 3.490 18 O -0.529 6.529 19 C -0.069 4.069 20 C -0.155 4.155 21 C 0.018 3.982 22 O -0.193 6.193 23 C 0.050 3.950 24 C -0.109 4.109 25 C -0.097 4.097 26 C -0.136 4.136 27 C -0.066 4.066 28 C -0.112 4.112 29 C 0.131 3.869 30 H 0.254 0.746 31 H 0.113 0.887 32 H 0.025 0.975 33 H 0.377 0.623 34 H 0.398 0.602 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.207 0.793 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.029 0.971 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.990 -20.667 5.761 22.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.748 3.252 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.352 4.352 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.004 3.996 11 C 0.006 3.994 12 H 0.079 0.921 13 O -0.370 6.370 14 C 0.038 3.962 15 H 0.117 0.883 16 N -0.368 5.368 17 C 0.296 3.704 18 O -0.405 6.405 19 C -0.109 4.109 20 C -0.157 4.157 21 C -0.047 4.047 22 O -0.094 6.094 23 C 0.003 3.997 24 C -0.127 4.127 25 C -0.115 4.115 26 C -0.155 4.155 27 C -0.084 4.084 28 C -0.113 4.113 29 C 0.004 3.996 30 H 0.065 0.935 31 H 0.130 0.870 32 H 0.043 0.957 33 H 0.224 0.776 34 H 0.232 0.768 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.223 0.777 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.047 0.953 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 5.531 -21.123 4.433 22.281 hybrid contribution -0.120 1.479 0.719 1.649 sum 5.411 -19.644 5.152 21.017 Atomic orbital electron populations 1.69720 1.04954 1.25108 1.57546 1.24799 0.95777 0.97828 1.02147 0.86096 0.78398 0.82688 0.77993 1.21076 1.21499 1.21076 1.19065 0.90595 0.82155 1.43374 0.90257 1.44273 1.01475 0.99783 1.87213 1.22577 0.85535 0.91917 0.99584 1.23664 0.82662 0.96096 0.96936 0.92055 1.86416 1.15578 1.58791 1.76257 1.21991 0.94012 0.85158 0.95079 0.88286 1.45988 1.59197 1.18228 1.13348 1.20484 0.77826 0.83301 0.88801 1.90740 1.52141 1.80437 1.17188 1.19987 1.01273 0.92293 0.97395 1.20405 0.91876 0.97934 1.05481 1.23676 0.93476 0.92205 0.95380 1.83991 1.14543 1.47631 1.63282 1.19599 0.86069 0.93769 1.00297 1.19904 0.87708 1.01937 1.03191 1.20907 0.98046 0.94438 0.98093 1.20779 0.97146 0.97752 0.99775 1.20305 0.91020 0.98284 0.98784 1.19721 0.93425 0.96647 1.01463 1.21614 0.93728 0.85357 0.98942 0.93527 0.86973 0.95722 0.77597 0.76836 0.87742 0.87808 0.77681 0.85212 0.84915 0.85364 0.85688 0.95273 0.94965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.26 10.09 55.49 0.56 -25.70 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 3 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.22 -6.20 10.27 -15.06 -0.15 -6.35 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -15.31 3.40 -169.94 -0.58 -15.88 16 10 C 0.13 3.07 5.63 -2.42 -0.01 3.05 16 11 C 0.07 1.23 4.06 -24.47 -0.10 1.13 16 12 H 0.06 1.03 8.00 -51.93 -0.42 0.62 16 13 O -0.57 -9.51 13.48 -35.23 -0.47 -9.98 16 14 C 0.14 2.68 3.00 -66.10 -0.20 2.48 16 15 H 0.10 2.11 7.62 -51.93 -0.40 1.71 16 16 N -0.72 -10.41 5.12 -52.03 -0.27 -10.67 16 17 C 0.51 7.59 7.82 -10.99 -0.09 7.51 16 18 O -0.53 -10.40 15.72 5.55 0.09 -10.31 16 19 C -0.07 -0.71 6.25 -29.04 -0.18 -0.89 16 20 C -0.16 -1.90 4.85 -102.66 -0.50 -2.40 16 21 C 0.02 0.20 11.89 29.24 0.35 0.54 16 22 O -0.19 -2.47 10.58 3.91 0.04 -2.43 16 23 C 0.05 0.65 7.42 -38.47 -0.29 0.36 16 24 C -0.11 -1.17 10.07 -39.47 -0.40 -1.56 16 25 C -0.10 -0.92 10.01 -39.54 -0.40 -1.31 16 26 C -0.14 -1.41 9.98 -39.94 -0.40 -1.81 16 27 C -0.07 -0.80 10.05 -39.69 -0.40 -1.20 16 28 C -0.11 -1.50 6.38 -105.16 -0.67 -2.17 16 29 C 0.13 2.85 7.00 -3.06 -0.02 2.83 16 30 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.11 2.89 5.87 -51.93 -0.31 2.59 16 32 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.38 4.77 9.12 45.56 0.42 5.19 16 34 H 0.40 4.49 8.54 -40.82 -0.35 4.14 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 37 H 0.21 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 39 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 40 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.13 1.39 8.06 -52.48 -0.42 0.96 16 42 H 0.03 0.61 8.03 -51.93 -0.42 0.20 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 365.61 15.07 5.51 5.51 Total: -1.00 -35.55 365.61 -8.51 -44.06 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -4.82 Total: 8.83 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -3.55 Total: -0.17 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.28 Total: -52.26 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.35 Total: -22.72 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.55 -8.51 -44.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077896047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.565 kcal (2) G-P(sol) polarization free energy of solvation -35.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds