Wall clock time and date at job start Tue Mar 31 2020 05:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00258 * 2 1 4 4 H 1.09007 * 110.91255 * 26.09591 * 3 2 1 5 5 C 1.55122 * 111.16327 * 262.17025 * 3 2 1 6 6 N 1.47421 * 104.94510 * 205.12861 * 5 3 2 7 7 C 1.36930 * 125.65125 * 204.03986 * 6 5 3 8 8 H 1.07995 * 120.00428 * 179.97438 * 7 6 5 9 9 C 1.38812 * 119.99911 * 359.95308 * 7 6 5 10 10 N 1.31616 * 120.00537 * 0.02562 * 9 7 6 11 11 Si 1.86808 * 120.00155 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46705 * 90.00386 * 11 9 7 13 13 H 1.48493 * 109.47588 * 210.00443 * 11 9 7 14 14 H 1.48494 * 109.47008 * 330.00782 * 11 9 7 15 15 C 1.47025 * 108.69935 * 24.00293 * 6 5 3 16 16 C 1.54324 * 107.27206 * 358.94044 * 15 6 5 17 17 H 1.09000 * 110.72054 * 96.34854 * 16 15 6 18 18 N 1.46505 * 110.71897 * 219.44371 * 16 15 6 19 19 C 1.34777 * 119.99724 * 271.15974 * 18 16 15 20 20 O 1.21573 * 120.00277 * 359.97438 * 19 18 16 21 21 C 1.47710 * 119.99649 * 179.72300 * 19 18 16 22 22 C 1.41506 * 126.51875 * 179.97438 * 21 19 18 23 23 C 1.35360 * 105.50172 * 179.90345 * 22 21 19 24 24 C 1.50703 * 126.38122 * 180.12163 * 23 22 21 25 25 F 1.39905 * 109.46822 * 210.30885 * 24 23 22 26 26 F 1.39901 * 109.47492 * 330.30760 * 24 23 22 27 27 N 1.35028 * 107.23078 * 0.36159 * 23 22 21 28 28 H 0.97003 * 124.88594 * 179.79302 * 27 23 22 29 29 N 1.28462 * 110.23361 * 359.76305 * 27 23 22 30 30 H 1.08997 * 109.47492 * 300.00225 * 1 2 3 31 31 H 1.09003 * 109.47149 * 59.99640 * 1 2 3 32 32 H 1.08999 * 109.47273 * 180.02562 * 1 2 3 33 33 H 1.09003 * 110.41949 * 86.20244 * 5 3 2 34 34 H 1.09004 * 110.20569 * 323.95437 * 5 3 2 35 35 H 0.96998 * 120.00573 * 179.97438 * 10 9 7 36 36 H 1.09007 * 109.88192 * 239.52137 * 15 6 5 37 37 H 1.09004 * 110.00841 * 118.42891 * 15 6 5 38 38 H 0.97000 * 119.99792 * 91.15541 * 18 16 15 39 39 H 1.08001 * 127.24486 * 0.02562 * 22 21 19 40 40 H 1.09003 * 109.47156 * 90.31309 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3332 2.0328 0.4479 5 6 2.4181 1.7368 -1.4331 6 7 3.4967 2.7232 -1.2407 7 6 3.8517 3.7014 -2.1307 8 1 4.6596 4.3783 -1.8953 9 6 3.1734 3.8228 -3.3357 10 7 2.1887 2.9980 -3.6227 11 14 3.6571 5.1578 -4.5496 12 1 4.6963 4.6346 -5.4724 13 1 2.4644 5.5722 -5.3311 14 1 4.1954 6.3277 -3.8102 15 6 4.1276 2.4831 0.0654 16 6 3.3824 1.3032 0.7242 17 1 3.9105 0.3663 0.5470 18 7 3.2108 1.5356 2.1605 19 6 4.1627 1.1350 3.0264 20 8 5.1635 0.5803 2.6157 21 6 3.9925 1.3748 4.4739 22 6 4.8983 1.0142 5.4995 23 6 4.3256 1.4336 6.6520 24 6 4.8969 1.2877 8.0389 25 9 3.8532 1.1732 8.9635 26 9 5.6977 0.1418 8.0953 27 7 3.1446 2.0022 6.3279 28 1 2.5213 2.3875 6.9636 29 7 2.9652 1.9602 5.0566 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.5730 2.1944 -1.9475 34 1 2.7853 0.8778 -1.9948 35 1 1.7144 3.0830 -4.4645 36 1 4.0385 3.3726 0.6892 37 1 5.1789 2.2288 -0.0693 38 1 2.4120 1.9779 2.4882 39 1 5.8477 0.5120 5.3862 40 1 5.4994 2.1641 8.2777 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082121791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:34 Heat of formation + Delta-G solvation = -67.139041 kcal Electronic energy + Delta-G solvation = -27974.603936 eV Core-core repulsion = 23463.350924 eV Total energy + Delta-G solvation = -4511.253012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.62567 -47.65120 -43.11617 -39.55021 -37.99459 -35.90306 -34.10868 -32.57028 -32.24547 -31.58617 -28.83268 -27.28779 -26.65379 -26.06936 -24.82717 -23.54839 -21.84283 -20.71058 -20.40159 -19.75557 -19.24387 -18.19560 -17.63116 -17.50027 -16.92631 -16.40927 -16.01564 -15.79993 -15.34040 -14.93540 -14.49124 -14.46769 -14.37522 -14.21548 -14.14032 -13.95095 -13.82193 -13.43201 -13.18388 -12.84386 -12.22585 -12.11296 -11.86869 -11.49279 -11.36125 -11.26588 -11.01768 -10.83204 -10.76850 -10.23307 -10.07116 -9.89341 -9.85954 -9.80739 -9.71226 -9.09008 -8.70293 -8.66852 -6.89520 -5.69174 -3.12143 1.13728 1.55629 2.17560 2.92557 3.31838 3.36963 3.39572 3.44474 3.46131 3.53868 3.91165 4.13223 4.19120 4.25321 4.49906 4.90587 5.01468 5.21258 5.32633 5.43167 5.51136 5.62610 5.69137 5.69628 5.82993 5.88152 5.95886 6.08919 6.21765 6.36797 6.45654 6.68804 6.87796 7.24773 7.28843 7.56076 7.68732 7.74192 7.80798 8.25950 8.31691 9.16442 9.76742 10.39334 11.34689 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.019598 B = 0.002544 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.365047 B =11004.352509 C =11735.638768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.055 3.945 4 H 0.068 0.932 5 C 0.142 3.858 6 N -0.600 5.600 7 C -0.222 4.222 8 H 0.080 0.920 9 C -0.011 4.011 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.130 3.870 16 C 0.134 3.866 17 H 0.105 0.895 18 N -0.699 5.699 19 C 0.601 3.399 20 O -0.526 6.526 21 C -0.003 4.003 22 C -0.126 4.126 23 C -0.079 4.079 24 C 0.353 3.647 25 F -0.199 7.199 26 F -0.183 7.183 27 N -0.360 5.360 28 H 0.450 0.550 29 N -0.233 5.233 30 H 0.033 0.967 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.027 0.973 35 H 0.253 0.747 36 H 0.030 0.970 37 H 0.036 0.964 38 H 0.403 0.597 39 H 0.174 0.826 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.795 -2.376 23.801 23.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.298 6.298 3 C -0.005 4.005 4 H 0.086 0.914 5 C 0.017 3.983 6 N -0.328 5.328 7 C -0.350 4.350 8 H 0.098 0.902 9 C -0.206 4.206 10 N -0.572 5.572 11 Si 0.748 3.252 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.207 1.207 15 C 0.003 3.997 16 C 0.030 3.970 17 H 0.123 0.877 18 N -0.349 5.349 19 C 0.384 3.616 20 O -0.400 6.400 21 C -0.163 4.163 22 C -0.155 4.155 23 C -0.205 4.205 24 C 0.297 3.703 25 F -0.181 7.181 26 F -0.164 7.164 27 N -0.076 5.076 28 H 0.296 0.704 29 N -0.070 5.070 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.131 0.869 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.238 0.762 39 H 0.192 0.808 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.016 -2.428 23.025 23.174 hybrid contribution -0.016 0.798 0.186 0.820 sum -1.032 -1.630 23.211 23.291 Atomic orbital electron populations 1.22709 0.81610 1.01947 0.99917 1.87848 1.19207 1.27670 1.95062 1.24071 0.92547 0.83818 1.00056 0.91425 1.22334 0.94575 0.92095 0.89344 1.44294 1.37104 1.35646 1.15755 1.19094 1.13755 1.06186 0.95952 0.90168 1.24805 0.98526 0.99393 0.97878 1.69747 1.24511 1.38831 1.24075 0.86030 0.77318 0.80912 0.80979 1.21513 1.21655 1.20660 1.21607 0.95891 0.94008 0.88152 1.22262 0.97076 1.00439 0.77269 0.87678 1.45857 1.22182 1.59820 1.07073 1.16764 0.83429 0.78816 0.82573 1.90828 1.28755 1.42566 1.77824 1.22158 0.93455 1.04957 0.95772 1.21607 1.02283 1.02896 0.88668 1.21813 0.92412 1.09058 0.97229 1.19671 0.80995 0.88048 0.81538 1.93030 1.60220 1.96877 1.67926 1.93071 1.73325 1.53566 1.96440 1.43126 1.15520 1.43232 1.05718 0.70405 1.73652 1.23786 1.18408 0.91137 0.94808 0.93509 0.90304 0.86947 0.95469 0.93594 0.95176 0.94644 0.76175 0.80850 0.84633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.85 101.05 1.10 1.60 16 2 O -0.38 -7.05 10.52 -35.23 -0.37 -7.42 16 3 C 0.05 1.06 3.17 -24.47 -0.08 0.98 16 4 H 0.07 1.23 7.69 -51.92 -0.40 0.83 16 5 C 0.14 3.47 5.63 -2.42 -0.01 3.45 16 6 N -0.60 -15.44 3.40 -169.93 -0.58 -16.02 16 7 C -0.22 -6.16 10.27 -15.06 -0.15 -6.31 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 10 N -0.92 -26.55 10.09 55.49 0.56 -25.99 16 11 Si 0.92 21.91 29.55 -169.99 -5.02 16.88 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 C 0.13 2.85 7.00 -3.06 -0.02 2.83 16 16 C 0.13 2.57 3.00 -66.10 -0.20 2.37 16 17 H 0.11 2.18 7.62 -51.93 -0.40 1.79 16 18 N -0.70 -11.22 5.11 -53.01 -0.27 -11.49 16 19 C 0.60 9.80 7.82 -12.39 -0.10 9.70 16 20 O -0.53 -10.17 16.61 5.30 0.09 -10.08 16 21 C 0.00 -0.04 7.13 -82.76 -0.59 -0.63 16 22 C -0.13 -1.37 10.41 -39.36 -0.41 -1.78 16 23 C -0.08 -0.63 6.84 -82.21 -0.56 -1.20 16 24 C 0.35 1.91 5.83 36.01 0.21 2.12 16 25 F -0.20 -1.25 17.30 2.25 0.04 -1.21 16 26 F -0.18 -1.41 17.05 2.25 0.04 -1.37 16 27 N -0.36 -2.81 6.79 33.50 0.23 -2.59 16 28 H 0.45 1.93 8.96 -190.44 -1.71 0.22 16 29 N -0.23 -2.60 11.92 33.42 0.40 -2.20 16 30 H 0.03 0.43 8.12 -51.93 -0.42 0.00 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.11 3.01 5.87 -51.93 -0.30 2.71 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.03 0.64 8.03 -51.93 -0.42 0.23 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.40 5.68 8.26 -40.82 -0.34 5.34 16 39 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.14 0.23 8.14 -51.93 -0.42 -0.20 16 LS Contribution 352.59 15.07 5.31 5.31 Total: -1.00 -33.84 352.59 -6.56 -40.40 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.07 Total: 3.01 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: -0.91 Total: 12.76 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.34 Total: -58.28 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.28 Total: -17.50 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.08 Total: -2.58 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.84 -6.56 -40.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082121791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.741 kcal (2) G-P(sol) polarization free energy of solvation -33.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds