Wall clock time and date at job start Tue Mar 31 2020 05:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34251 * 125.75692 * 2 1 4 4 C 1.38048 * 107.41958 * 179.97438 * 3 2 1 5 5 C 1.47433 * 126.41287 * 180.02562 * 4 3 2 6 6 O 1.21602 * 119.99357 * 180.02562 * 5 4 3 7 7 N 1.34771 * 120.00433 * 0.02562 * 5 4 3 8 8 C 1.46493 * 120.00392 * 180.02562 * 7 5 4 9 9 H 1.09008 * 110.64076 * 36.68407 * 8 7 5 10 10 C 1.54327 * 110.72027 * 273.54690 * 8 7 5 11 11 N 1.47024 * 107.26881 * 219.43990 * 10 8 7 12 12 C 1.36941 * 125.64544 * 178.97229 * 11 10 8 13 13 H 1.07996 * 119.99574 * 0.02562 * 12 11 10 14 14 C 1.38810 * 119.99924 * 180.02562 * 12 11 10 15 15 N 1.31619 * 119.99666 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00227 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46907 * 59.99834 * 16 14 12 18 18 H 1.48500 * 109.47336 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47041 * 300.00558 * 16 14 12 20 20 C 1.47427 * 108.70258 * 358.94130 * 11 10 8 21 21 C 1.54902 * 104.83564 * 24.12818 * 20 11 10 22 22 H 1.09000 * 111.00554 * 204.92058 * 21 20 11 23 23 O 1.42900 * 111.00685 * 81.06332 * 21 20 11 24 24 C 1.41288 * 107.17058 * 359.97438 * 4 3 2 25 25 C 1.50698 * 125.98934 * 180.02562 * 24 4 3 26 26 F 1.39904 * 109.47139 * 210.00167 * 25 24 4 27 27 F 1.39902 * 109.46921 * 330.00101 * 25 24 4 28 28 N 1.30453 * 108.01984 * 0.02562 * 24 4 3 29 29 H 1.08991 * 109.47174 * 270.00162 * 1 2 3 30 30 H 1.09003 * 109.46617 * 30.00350 * 1 2 3 31 31 H 1.08999 * 109.46980 * 150.00042 * 1 2 3 32 32 H 1.08002 * 126.29312 * 359.97438 * 3 2 1 33 33 H 0.97002 * 119.99644 * 0.02562 * 7 5 4 34 34 H 1.08997 * 109.87851 * 338.85845 * 10 8 7 35 35 H 1.09001 * 109.88101 * 100.02160 * 10 8 7 36 36 H 0.97010 * 119.99698 * 179.97438 * 15 14 12 37 37 H 1.09004 * 110.36103 * 142.96759 * 20 11 10 38 38 H 1.09001 * 110.36351 * 265.17603 * 20 11 10 39 39 H 0.96698 * 113.99801 * 67.80319 * 23 21 20 40 40 H 1.08999 * 109.47022 * 90.00591 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2495 1.0894 0.0000 4 6 3.5599 0.6551 0.0006 5 6 4.7639 1.5060 0.0013 6 8 5.8682 0.9968 0.0013 7 7 4.6407 2.8481 0.0020 8 6 5.8371 3.6936 0.0022 9 1 6.6229 3.2476 -0.6076 10 6 6.3348 3.9351 1.4429 11 7 6.7762 5.3352 1.5232 12 6 7.2694 5.9536 2.6411 13 1 7.3602 5.4041 3.5664 14 6 7.6525 7.2866 2.5849 15 7 7.5413 7.9562 1.4572 16 14 8.3259 8.1300 4.1095 17 1 9.5499 7.4238 4.5660 18 1 8.6597 9.5408 3.7881 19 1 7.3039 8.0955 5.1864 20 6 6.6007 5.9628 0.2008 21 6 5.4982 5.1245 -0.4929 22 1 5.5803 5.1922 -1.5777 23 8 4.1984 5.5240 -0.0537 24 6 3.5312 -0.7574 0.0016 25 6 4.7322 -1.6676 0.0030 26 9 4.4144 -2.8602 -0.6559 27 9 5.7942 -1.0393 -0.6562 28 7 2.2827 -1.1357 0.0010 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.9167 2.1169 -0.0004 33 1 3.7598 3.2542 0.0024 34 1 5.5233 3.7611 2.1494 35 1 7.1698 3.2699 1.6630 36 1 7.8087 8.8879 1.4180 37 1 6.2769 6.9976 0.3121 38 1 7.5296 5.9157 -0.3677 39 1 3.9425 6.4118 -0.3390 40 1 5.0210 -1.8865 1.0310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083530485.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:04 Heat of formation + Delta-G solvation = -61.695176 kcal Electronic energy + Delta-G solvation = -28760.605728 eV Core-core repulsion = 24249.588779 eV Total energy + Delta-G solvation = -4511.016948 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.84972 -46.82478 -41.73484 -39.30967 -37.66036 -34.73388 -34.13871 -33.85172 -31.86291 -30.70483 -28.79200 -28.41945 -27.00856 -25.71037 -24.43802 -22.75504 -21.06214 -20.61302 -20.11755 -19.62102 -18.18699 -17.49987 -17.26020 -16.88256 -16.62184 -16.46659 -15.94942 -15.86697 -15.25406 -14.78767 -14.52931 -14.25625 -14.01964 -13.81832 -13.48299 -13.31510 -13.23545 -13.05833 -12.93688 -12.77695 -12.64562 -12.48328 -11.73497 -11.53897 -11.32149 -11.21569 -11.05730 -10.82623 -10.57496 -10.36341 -10.04313 -9.96223 -9.82249 -9.62655 -9.23410 -9.04946 -8.68099 -8.58557 -6.83282 -5.68284 -3.07802 1.20336 1.65890 1.83907 3.35773 3.41049 3.44749 3.46016 3.50264 3.57028 3.93165 4.21435 4.34839 4.49287 4.61572 4.66169 4.68687 4.87805 4.93022 5.00853 5.18347 5.36831 5.38867 5.42383 5.51109 5.75121 5.80332 5.96110 6.08980 6.30125 6.36469 6.60037 6.75736 6.98908 7.05195 7.27827 7.57435 7.72661 7.88343 8.10957 8.32213 8.55935 9.19513 9.80652 10.44163 11.36760 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.018602 B = 0.002980 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.838290 B = 9393.740150 C =10028.035101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.355 5.355 3 C 0.103 3.897 4 C -0.254 4.254 5 C 0.580 3.420 6 O -0.525 6.525 7 N -0.705 5.705 8 C 0.146 3.854 9 H 0.101 0.899 10 C 0.132 3.868 11 N -0.597 5.597 12 C -0.216 4.216 13 H 0.077 0.923 14 C -0.013 4.013 15 N -0.928 5.928 16 Si 0.916 3.084 17 H -0.285 1.285 18 H -0.290 1.290 19 H -0.285 1.285 20 C 0.127 3.873 21 C 0.068 3.932 22 H 0.059 0.941 23 O -0.562 6.562 24 C 0.049 3.951 25 C 0.357 3.643 26 F -0.198 7.198 27 F -0.158 7.158 28 N -0.263 5.263 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.192 0.808 33 H 0.402 0.598 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.252 0.748 37 H 0.115 0.885 38 H 0.023 0.977 39 H 0.379 0.621 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.917 -13.304 -5.918 21.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.134 5.134 3 C -0.048 4.048 4 C -0.269 4.269 5 C 0.366 3.634 6 O -0.401 6.401 7 N -0.356 5.356 8 C 0.041 3.959 9 H 0.119 0.881 10 C 0.005 3.995 11 N -0.323 5.323 12 C -0.344 4.344 13 H 0.095 0.905 14 C -0.208 4.208 15 N -0.577 5.577 16 Si 0.747 3.253 17 H -0.212 1.212 18 H -0.216 1.216 19 H -0.212 1.212 20 C 0.001 3.999 21 C 0.007 3.993 22 H 0.077 0.923 23 O -0.368 6.368 24 C -0.120 4.120 25 C 0.301 3.699 26 F -0.179 7.179 27 F -0.139 7.139 28 N -0.085 5.085 29 H 0.102 0.898 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.209 0.791 33 H 0.237 0.763 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.132 0.868 38 H 0.040 0.960 39 H 0.226 0.774 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.964 -15.064 -5.612 22.655 hybrid contribution 0.326 1.960 0.449 2.037 sum -15.637 -13.104 -5.163 21.045 Atomic orbital electron populations 1.22090 0.72864 1.05321 1.04297 1.48377 1.07341 1.03494 1.54190 1.23223 0.90032 0.94045 0.97458 1.20238 0.93498 0.92603 1.20523 1.17212 0.87551 0.81866 0.76819 1.90873 1.26275 1.73249 1.49708 1.45621 1.10352 1.04817 1.74857 1.22128 0.87122 0.88075 0.98555 0.88072 1.21603 0.96835 0.87832 0.93262 1.44286 1.74793 1.05456 1.07786 1.19059 1.33665 0.93286 0.88391 0.90478 1.24745 1.01920 0.96613 0.97473 1.69711 1.54282 1.09537 1.24176 0.86117 0.78805 0.78488 0.81897 1.21197 1.21603 1.21215 1.22596 0.93148 0.99237 0.84913 1.23577 0.85212 0.94302 0.96183 0.92344 1.86218 1.33147 1.37273 1.80193 1.22950 0.93859 0.93780 1.01365 1.19376 0.80624 0.75860 0.94065 1.93013 1.93304 1.47604 1.84026 1.93214 1.55705 1.81752 1.83192 1.77151 1.00450 1.07574 1.23362 0.89806 0.88580 0.88636 0.79092 0.76262 0.95347 0.95276 0.93721 0.86760 0.95952 0.77382 0.85365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.40 11.44 59.85 0.68 1.08 16 2 N -0.35 -3.28 3.98 -67.60 -0.27 -3.55 16 3 C 0.10 0.98 10.99 -16.56 -0.18 0.80 16 4 C -0.25 -3.37 6.09 -105.06 -0.64 -4.01 16 5 C 0.58 9.30 7.77 -12.52 -0.10 9.21 16 6 O -0.52 -10.09 12.98 5.28 0.07 -10.03 16 7 N -0.71 -10.78 5.07 -53.10 -0.27 -11.05 16 8 C 0.15 2.68 3.12 -66.10 -0.21 2.47 16 9 H 0.10 1.92 7.69 -51.92 -0.40 1.52 16 10 C 0.13 2.91 6.99 -3.06 -0.02 2.89 16 11 N -0.60 -15.27 3.39 -170.07 -0.58 -15.84 16 12 C -0.22 -6.03 10.27 -15.06 -0.15 -6.19 16 13 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 14 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 15 N -0.93 -26.29 10.09 55.49 0.56 -25.73 16 16 Si 0.92 22.00 29.55 -169.99 -5.02 16.97 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 C 0.13 2.92 5.62 -2.53 -0.01 2.91 16 21 C 0.07 1.19 4.28 -24.58 -0.11 1.09 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 23 O -0.56 -8.97 12.23 -35.23 -0.43 -9.40 16 24 C 0.05 0.66 6.89 -82.02 -0.56 0.10 16 25 C 0.36 4.65 5.66 36.00 0.20 4.85 16 26 F -0.20 -2.64 17.27 2.25 0.04 -2.61 16 27 F -0.16 -2.55 13.58 2.25 0.03 -2.52 16 28 N -0.26 -3.29 12.43 33.89 0.42 -2.86 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.10 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.19 1.12 7.46 -52.49 -0.39 0.73 16 33 H 0.40 5.25 6.49 -40.82 -0.26 4.98 16 34 H 0.03 0.64 8.03 -51.93 -0.42 0.23 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.25 6.96 8.31 -40.82 -0.34 6.63 16 37 H 0.11 2.91 5.87 -51.93 -0.30 2.60 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.38 4.81 9.12 45.56 0.42 5.22 16 40 H 0.13 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 344.31 15.07 5.19 5.19 Total: -1.00 -35.88 344.31 -5.32 -41.20 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -3.87 Total: 5.48 kcal Atomic # 6 Polarization: 15.94 SS G_CDS: -1.19 Total: 14.74 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.13 Total: -59.03 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.36 Total: -19.43 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.07 Total: -5.13 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.88 -5.32 -41.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083530485.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.495 kcal (2) G-P(sol) polarization free energy of solvation -35.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds