Wall clock time and date at job start Tue Mar 31 2020 05:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.28448 * 125.19131 * 2 1 4 4 C 1.30865 * 110.93000 * 180.26428 * 3 2 1 5 5 C 1.50699 * 126.06730 * 179.97438 * 4 3 2 6 6 F 1.39901 * 109.46997 * 120.00089 * 5 4 3 7 7 F 1.39898 * 109.47067 * 239.99596 * 5 4 3 8 8 C 1.39668 * 107.85986 * 359.97438 * 4 3 2 9 9 C 1.36597 * 125.19298 * 180.29813 * 2 1 3 10 10 C 1.47159 * 126.88168 * 359.72227 * 9 2 1 11 11 O 1.21626 * 120.00371 * 5.01090 * 10 9 2 12 12 N 1.34781 * 119.99979 * 185.01427 * 10 9 2 13 13 C 1.46504 * 119.99895 * 185.09107 * 12 10 9 14 14 H 1.09000 * 110.64163 * 36.69239 * 13 12 10 15 15 C 1.54328 * 110.72028 * 273.54989 * 13 12 10 16 16 N 1.47023 * 107.26709 * 219.44401 * 15 13 12 17 17 C 1.36939 * 125.64887 * 178.97310 * 16 15 13 18 18 H 1.07999 * 119.99424 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00201 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00161 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00042 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46786 * 90.00589 * 21 19 17 23 23 H 1.48496 * 109.47596 * 210.00198 * 21 19 17 24 24 H 1.48491 * 109.47386 * 330.00722 * 21 19 17 25 25 C 1.47425 * 108.70520 * 358.94247 * 16 15 13 26 26 C 1.54907 * 104.83330 * 24.12506 * 25 16 15 27 27 H 1.08995 * 111.00557 * 204.91770 * 26 25 16 28 28 O 1.42899 * 111.00339 * 81.06662 * 26 25 16 29 29 H 1.09003 * 109.47374 * 264.15772 * 1 2 3 30 30 H 1.09009 * 109.47014 * 24.15690 * 1 2 3 31 31 H 1.09007 * 109.47144 * 144.15447 * 1 2 3 32 32 H 1.09001 * 109.47429 * 359.97438 * 5 4 3 33 33 H 1.08001 * 127.31902 * 179.97438 * 8 4 3 34 34 H 0.96993 * 119.99937 * 5.09388 * 12 10 9 35 35 H 1.08999 * 109.88092 * 338.85653 * 15 13 12 36 36 H 1.08997 * 109.88234 * 100.02919 * 15 13 12 37 37 H 0.96997 * 119.99749 * 179.97438 * 20 19 17 38 38 H 1.09000 * 110.36899 * 142.96903 * 25 16 15 39 39 H 1.08999 * 110.36679 * 265.17586 * 25 16 15 40 40 H 0.96702 * 114.00344 * 67.80135 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7273 -0.0056 5 6 4.6334 1.6894 -0.0080 6 9 5.4178 1.4769 1.1308 7 9 5.4090 1.4819 -1.1537 8 6 3.5611 -0.6666 -0.0091 9 6 2.2522 -1.1163 -0.0058 10 6 1.7993 -2.5164 -0.0074 11 8 0.6134 -2.7720 -0.0953 12 7 2.6986 -3.5157 0.0887 13 6 2.2603 -4.9091 -0.0249 14 1 1.4621 -5.0020 -0.7613 15 6 1.8043 -5.4515 1.3461 16 7 2.2814 -6.8384 1.4473 17 6 2.1009 -7.6682 2.5216 18 1 1.5674 -7.3160 3.3921 19 6 2.6027 -8.9620 2.4914 20 7 3.2525 -9.3913 1.4302 21 14 2.3571 -10.0936 3.9572 22 1 1.0881 -10.8475 3.7933 23 1 3.4920 -11.0474 4.0420 24 1 2.2956 -9.2855 5.2015 25 6 2.9857 -7.1883 0.2003 26 6 3.4542 -5.8325 -0.3844 27 1 3.5864 -5.8975 -1.4643 28 8 4.6547 -5.3882 0.2507 29 1 -0.3634 -0.1046 1.0223 30 1 -0.3633 0.9377 -0.4206 31 1 -0.3634 -0.8331 -0.6018 32 1 4.2571 2.7124 -0.0047 33 1 4.4594 -1.2661 -0.0143 34 1 3.6359 -3.3124 0.2330 35 1 2.2384 -4.8509 2.1454 36 1 0.7165 -5.4280 1.4108 37 1 3.6034 -10.2953 1.4093 38 1 3.8436 -7.8255 0.4151 39 1 2.3072 -7.6875 -0.4914 40 1 5.4284 -5.9345 0.0556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083639332.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:06 Heat of formation + Delta-G solvation = -91.680814 kcal Electronic energy + Delta-G solvation = -28399.457458 eV Core-core repulsion = 23887.140234 eV Total energy + Delta-G solvation = -4512.317223 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.96520 -47.98515 -43.85423 -40.98142 -39.34795 -36.37280 -35.77738 -34.76815 -33.75063 -32.30580 -30.26298 -29.71535 -28.74343 -26.61470 -26.25978 -24.51533 -22.64499 -22.31634 -21.43609 -21.11665 -19.55990 -18.92984 -18.36444 -18.33110 -18.20859 -17.37893 -17.32626 -17.11821 -16.90626 -16.48089 -16.06329 -15.61851 -15.50370 -15.02859 -14.89652 -14.73763 -14.59957 -14.35714 -14.30080 -13.96240 -13.82910 -13.58916 -13.42826 -13.22006 -12.95514 -12.75672 -12.63108 -12.26117 -12.14969 -12.01160 -11.90178 -11.86834 -11.32576 -10.89495 -10.71797 -10.62112 -10.34969 -10.17852 -8.90211 -7.80981 -5.23976 -0.01817 0.99832 1.06669 1.46915 1.47751 1.56588 1.90453 1.96529 2.48027 2.57984 3.12626 3.19833 3.27570 3.30229 3.53827 3.71201 3.83633 3.88945 3.92459 4.03239 4.04940 4.25230 4.28622 4.31506 4.45409 4.50615 4.61919 4.71657 4.85646 4.90158 5.02609 5.30419 5.37818 5.38739 5.47215 5.72210 6.26064 6.31369 6.63155 6.86234 7.00106 7.08896 7.73258 8.35230 9.20876 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.018339 B = 0.002787 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.461554 B =10044.615242 C =10636.557094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.247 5.247 3 N -0.241 5.241 4 C -0.070 4.070 5 C 0.367 3.633 6 F -0.200 7.200 7 F -0.198 7.198 8 C -0.149 4.149 9 C -0.044 4.044 10 C 0.590 3.410 11 O -0.564 6.564 12 N -0.680 5.680 13 C 0.158 3.842 14 H 0.106 0.894 15 C 0.132 3.868 16 N -0.616 5.616 17 C -0.242 4.242 18 H 0.072 0.928 19 C -0.059 4.059 20 N -0.943 5.943 21 Si 0.979 3.021 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.275 1.275 25 C 0.125 3.875 26 C 0.091 3.909 27 H 0.099 0.901 28 O -0.564 6.564 29 H 0.097 0.903 30 H 0.125 0.875 31 H 0.105 0.895 32 H 0.164 0.836 33 H 0.184 0.816 34 H 0.420 0.580 35 H 0.019 0.981 36 H 0.016 0.984 37 H 0.250 0.750 38 H 0.091 0.909 39 H 0.004 0.996 40 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.908 21.856 -7.087 23.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.036 5.036 3 N -0.078 5.078 4 C -0.226 4.226 5 C 0.312 3.688 6 F -0.181 7.181 7 F -0.179 7.179 8 C -0.178 4.178 9 C -0.172 4.172 10 C 0.376 3.624 11 O -0.443 6.443 12 N -0.331 5.331 13 C 0.052 3.948 14 H 0.124 0.876 15 C 0.005 3.995 16 N -0.343 5.343 17 C -0.371 4.371 18 H 0.090 0.910 19 C -0.251 4.251 20 N -0.593 5.593 21 Si 0.807 3.193 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.200 1.200 25 C 0.000 4.000 26 C 0.030 3.970 27 H 0.117 0.883 28 O -0.373 6.373 29 H 0.115 0.885 30 H 0.143 0.857 31 H 0.123 0.877 32 H 0.181 0.819 33 H 0.201 0.799 34 H 0.258 0.742 35 H 0.037 0.963 36 H 0.034 0.966 37 H 0.059 0.941 38 H 0.109 0.891 39 H 0.022 0.978 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -0.119 22.806 -6.857 23.815 hybrid contribution 0.935 -2.170 0.731 2.473 sum 0.816 20.636 -6.126 21.542 Atomic orbital electron populations 1.22679 0.70130 1.07166 1.06084 1.45939 1.09084 1.01086 1.47507 1.72975 1.02967 1.13844 1.17976 1.22589 0.93076 0.94830 1.12074 1.19408 0.79471 0.99157 0.70796 1.93028 1.76578 1.96680 1.51797 1.93022 1.77007 1.96742 1.51160 1.22382 0.96514 0.94585 1.04286 1.21299 0.91602 0.89485 1.14771 1.17027 0.85517 0.83465 0.76438 1.90789 1.16874 1.84772 1.51907 1.45370 1.11942 1.04393 1.71438 1.21952 0.96687 0.79234 0.96929 0.87567 1.21631 0.95922 0.86193 0.95709 1.44543 1.64729 1.09282 1.15713 1.19369 1.29842 0.93489 0.94359 0.90971 1.25518 1.00692 0.98378 1.00561 1.69932 1.42880 1.17225 1.29260 0.85077 0.76893 0.78432 0.78878 1.21447 1.21462 1.19985 1.22524 0.97596 0.93980 0.85911 1.23296 0.84499 0.92869 0.96298 0.88311 1.86203 1.18930 1.56708 1.75428 0.88498 0.85707 0.87702 0.81938 0.79878 0.74155 0.96257 0.96635 0.94057 0.89130 0.97832 0.75206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 10.71 127.77 1.37 2.65 16 2 N -0.25 -5.56 3.75 -356.02 -1.33 -6.89 16 3 N -0.24 -5.20 11.90 -47.50 -0.57 -5.77 16 4 C -0.07 -1.44 6.65 43.05 0.29 -1.16 16 5 C 0.37 5.75 5.80 71.24 0.41 6.16 16 6 F -0.20 -3.78 17.32 44.97 0.78 -3.00 16 7 F -0.20 -3.59 17.32 44.97 0.78 -2.81 16 8 C -0.15 -3.28 10.43 22.66 0.24 -3.04 16 9 C -0.04 -1.10 6.96 40.79 0.28 -0.82 16 10 C 0.59 17.20 7.79 86.58 0.67 17.87 16 11 O -0.56 -19.06 14.58 -4.11 -0.06 -19.12 16 12 N -0.68 -19.54 5.07 -440.42 -2.23 -21.77 16 13 C 0.16 5.40 3.08 46.18 0.14 5.55 16 14 H 0.11 3.61 7.77 -2.39 -0.02 3.59 16 15 C 0.13 5.78 6.99 86.73 0.61 6.39 16 16 N -0.62 -31.61 3.39 -691.99 -2.35 -33.95 16 17 C -0.24 -13.65 10.27 84.03 0.86 -12.79 16 18 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 19 C -0.06 -3.26 5.49 84.86 0.47 -2.80 16 20 N -0.94 -53.73 10.09 21.65 0.22 -53.51 16 21 Si 0.98 45.27 29.55 68.60 2.03 47.29 16 22 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 24 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 25 C 0.13 5.72 5.62 86.85 0.49 6.21 16 26 C 0.09 3.00 4.28 31.98 0.14 3.14 16 27 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 28 O -0.56 -17.15 12.23 -148.98 -1.82 -18.98 16 29 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.10 1.97 6.55 -2.38 -0.02 1.95 16 32 H 0.16 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.18 3.31 7.62 -2.91 -0.02 3.29 16 34 H 0.42 10.74 6.64 -92.71 -0.62 10.13 16 35 H 0.02 0.88 8.03 -2.39 -0.02 0.86 16 36 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.25 13.79 8.31 -92.71 -0.77 13.01 16 38 H 0.09 4.62 5.87 -2.39 -0.01 4.61 16 39 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.40 9.42 9.12 -74.06 -0.68 8.75 16 Total: -1.00 -71.13 347.19 1.24 -69.89 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -0.17 Total: 21.25 kcal Atomic # 6 Polarization: 21.39 SS G_CDS: 5.96 Total: 27.36 kcal Atomic # 7 Polarization: -115.63 SS G_CDS: -6.26 Total: -121.90 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -1.88 Total: -38.09 kcal Atomic # 9 Polarization: -7.36 SS G_CDS: 1.56 Total: -5.81 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -71.13 1.24 -69.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083639332.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.790 kcal (2) G-P(sol) polarization free energy of solvation -71.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds