Wall clock time and date at job start Tue Mar 31 2020 06:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99763 * 2 1 4 4 H 1.48498 * 109.47017 * 269.99564 * 3 2 1 5 5 H 1.48492 * 109.47131 * 30.00139 * 3 2 1 6 6 H 1.48501 * 109.46802 * 149.99892 * 3 2 1 7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.84935 * 334.66194 * 10 9 7 12 12 C 1.53786 * 113.61643 * 105.85866 * 10 9 7 13 13 C 1.54049 * 86.98426 * 140.01639 * 12 10 9 14 14 H 1.09003 * 113.61268 * 89.11946 * 13 12 10 15 15 C 1.53002 * 113.62024 * 220.02020 * 13 12 10 16 16 N 1.46500 * 109.47425 * 272.50011 * 15 13 12 17 17 C 1.34772 * 120.00059 * 180.02562 * 16 15 13 18 18 O 1.21283 * 120.00308 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00066 * 180.02562 * 17 16 15 20 20 H 1.09007 * 109.54932 * 29.80454 * 19 17 16 21 21 C 1.53031 * 109.55472 * 149.99548 * 19 17 16 22 22 C 1.52583 * 109.98866 * 183.50531 * 21 19 17 23 23 C 1.52587 * 110.64122 * 290.00975 * 22 21 19 24 24 C 1.53041 * 109.98409 * 69.99098 * 23 22 21 25 25 S 1.81670 * 109.54807 * 269.51323 * 19 17 16 26 26 O 1.42097 * 108.66394 * 300.17235 * 25 19 17 27 27 O 1.42100 * 108.66361 * 71.51915 * 25 19 17 28 28 C 1.53781 * 113.61305 * 203.46713 * 10 9 7 29 29 H 0.96996 * 120.00281 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00062 * 359.97438 * 9 7 2 31 31 H 1.08992 * 113.61675 * 254.61383 * 12 10 9 32 32 H 1.09000 * 113.60973 * 25.51671 * 12 10 9 33 33 H 1.08997 * 109.47064 * 32.50151 * 15 13 12 34 34 H 1.09006 * 109.47182 * 152.49563 * 15 13 12 35 35 H 0.96996 * 119.99355 * 359.97438 * 16 15 13 36 36 H 1.09001 * 109.38300 * 303.66150 * 21 19 17 37 37 H 1.09004 * 109.38624 * 63.44484 * 21 19 17 38 38 H 1.09000 * 109.24846 * 50.31084 * 22 21 19 39 39 H 1.09005 * 109.24198 * 169.71638 * 22 21 19 40 40 H 1.09001 * 109.38969 * 190.14276 * 23 22 21 41 41 H 1.08995 * 109.38594 * 309.93383 * 23 22 21 42 42 H 1.09001 * 109.55058 * 56.20360 * 24 23 22 43 43 H 1.08998 * 109.54747 * 176.39935 * 24 23 22 44 44 H 1.08999 * 113.61567 * 334.48111 * 28 10 9 45 45 H 1.09000 * 113.61379 * 105.30234 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 3.0560 -3.5693 -0.4293 12 6 2.0328 -4.3828 1.3560 13 6 1.8625 -5.6908 0.5602 14 1 2.8068 -6.1596 0.2833 15 6 0.8750 -6.6712 1.1963 16 7 1.5802 -7.5166 2.1628 17 6 0.9070 -8.4609 2.8494 18 8 -0.2827 -8.6106 2.6675 19 6 1.6323 -9.3301 3.8441 20 1 2.4702 -8.7772 4.2689 21 6 0.6711 -9.7414 4.9616 22 6 1.4165 -10.5497 6.0195 23 6 1.8063 -11.9202 5.4735 24 6 2.9034 -11.7696 4.4172 25 16 2.2458 -10.8241 3.0122 26 8 1.1383 -11.5290 2.4683 27 8 3.3259 -10.4608 2.1633 28 6 1.2469 -4.8365 -0.5606 29 1 -0.4850 0.8400 -0.0004 30 1 0.3557 -2.3881 0.0005 31 1 2.9742 -4.3216 1.9018 32 1 1.1688 -4.1300 1.9705 33 1 0.0882 -6.1151 1.7060 34 1 0.4334 -7.2968 0.4205 35 1 2.5317 -7.3971 2.3080 36 1 0.2471 -8.8484 5.4209 37 1 -0.1315 -10.3488 4.5432 38 1 2.3170 -10.0112 6.3147 39 1 0.7744 -10.6796 6.8908 40 1 2.1725 -12.5438 6.2890 41 1 0.9334 -12.3913 5.0217 42 1 3.7536 -11.2400 4.8473 43 1 3.2213 -12.7556 4.0784 44 1 0.1684 -4.7076 -0.4690 45 1 1.5534 -5.1404 -1.5615 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086106520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:27 Heat of formation + Delta-G solvation = -83.801334 kcal Electronic energy + Delta-G solvation = -26265.310852 eV Core-core repulsion = 22410.716038 eV Total energy + Delta-G solvation = -3854.594813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.21894 -38.60072 -37.76552 -37.02327 -36.46324 -34.84145 -33.35343 -32.55466 -30.32655 -28.90942 -27.15782 -25.10796 -24.56430 -23.71459 -21.55994 -21.13571 -21.05358 -19.36595 -19.07878 -17.92805 -17.29371 -17.05841 -16.89999 -16.30209 -16.01147 -15.48641 -15.09848 -14.86471 -14.61835 -14.48918 -14.33516 -13.85566 -13.58482 -13.51900 -13.30189 -12.96953 -12.57259 -12.46379 -12.38136 -12.14156 -11.99254 -11.89905 -11.82999 -11.51623 -11.40411 -11.25507 -11.12034 -10.86150 -10.81730 -10.53618 -10.31604 -10.16108 -9.97804 -9.83644 -9.51478 -9.17461 -8.87826 -6.97108 -5.78990 -3.07930 -0.62313 2.07138 2.31726 2.67111 3.23208 3.40741 3.42071 3.47121 3.48914 3.85445 3.95440 4.05142 4.15866 4.34149 4.48293 4.57451 4.65232 4.83452 4.91567 4.93891 4.99192 5.20929 5.21564 5.23608 5.39547 5.45779 5.48915 5.48998 5.67499 5.78685 5.79789 5.90422 6.08292 6.14668 6.29270 6.33985 6.39363 6.57538 6.80975 7.10295 7.21019 7.68416 7.87367 8.39608 9.50600 10.08922 10.43132 11.43393 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.027365 B = 0.002136 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.940548 B =13103.901002 C =13285.661636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.161 4.161 13 C -0.130 4.130 14 H 0.092 0.908 15 C 0.128 3.872 16 N -0.715 5.715 17 C 0.525 3.475 18 O -0.512 6.512 19 C -0.600 4.600 20 H 0.156 0.844 21 C -0.094 4.094 22 C -0.141 4.141 23 C -0.114 4.114 24 C -0.601 4.601 25 S 2.422 3.578 26 O -0.914 6.914 27 O -0.928 6.928 28 C -0.141 4.141 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.405 0.595 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.081 0.919 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.711 -26.727 13.470 30.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.202 4.202 13 C -0.149 4.149 14 H 0.110 0.890 15 C 0.006 3.994 16 N -0.367 5.367 17 C 0.307 3.693 18 O -0.387 6.387 19 C -0.709 4.709 20 H 0.174 0.826 21 C -0.132 4.132 22 C -0.178 4.178 23 C -0.152 4.152 24 C -0.731 4.731 25 S 2.601 3.399 26 O -0.911 6.911 27 O -0.925 6.925 28 C -0.181 4.181 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.240 0.760 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.155 0.845 43 H 0.157 0.843 44 H 0.100 0.900 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.919 -26.814 12.405 30.132 hybrid contribution 0.859 1.274 1.005 1.836 sum 6.778 -25.540 13.409 29.632 Atomic orbital electron populations 1.69661 1.05133 1.25749 1.57483 1.24777 0.95532 0.97799 1.02873 0.86185 0.78631 0.83804 0.77530 1.21682 1.21779 1.20763 1.19301 0.91068 0.84237 1.42876 0.91097 1.42417 1.05768 0.99882 1.87048 1.21518 0.95289 0.85048 0.92789 0.90674 1.24008 1.01305 0.94745 1.00181 1.22729 0.98609 0.94394 0.99176 0.89015 1.21585 0.95184 0.91868 0.90778 1.46093 1.13163 1.35384 1.42061 1.19157 0.87575 0.81487 0.81111 1.90774 1.14141 1.68601 1.65163 1.30474 1.10832 1.20001 1.09626 0.82613 1.21232 0.96699 1.02654 0.92625 1.21748 1.01829 0.94918 0.99332 1.21355 0.96934 0.98834 0.98100 1.30261 1.10038 1.15359 1.17457 1.08288 0.76228 0.77739 0.77671 1.93631 1.52571 1.70152 1.74795 1.93626 1.54361 1.82766 1.61770 1.23425 1.00931 0.96937 0.96797 0.93447 0.78061 0.92700 0.90319 0.90667 0.91205 0.76043 0.88932 0.88553 0.90479 0.89055 0.89118 0.89395 0.84544 0.84342 0.90037 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.24 -6.73 9.97 -15.06 -0.15 -6.88 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -17.76 5.41 -52.64 -0.28 -18.04 16 10 C 0.17 3.19 4.47 -67.12 -0.30 2.89 16 11 H 0.08 1.44 8.11 -51.93 -0.42 1.02 16 12 C -0.16 -2.64 7.45 -25.77 -0.19 -2.83 16 13 C -0.13 -1.76 3.76 -89.67 -0.34 -2.09 16 14 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 15 C 0.13 1.72 5.51 -4.04 -0.02 1.69 16 16 N -0.72 -8.30 5.56 -60.29 -0.33 -8.63 16 17 C 0.52 6.48 6.89 -10.99 -0.08 6.40 16 18 O -0.51 -8.27 16.25 5.56 0.09 -8.18 16 19 C -0.60 -4.62 2.80 -27.87 -0.08 -4.70 16 20 H 0.16 0.59 8.14 -51.92 -0.42 0.17 16 21 C -0.09 -0.62 4.55 -26.93 -0.12 -0.74 16 22 C -0.14 -0.48 5.63 -27.16 -0.15 -0.63 16 23 C -0.11 -0.39 5.73 -26.92 -0.15 -0.54 16 24 C -0.60 -2.27 6.35 37.18 0.24 -2.03 16 25 S 2.42 20.49 4.67 -107.50 -0.50 19.98 16 26 O -0.91 -11.45 17.91 -57.81 -1.04 -12.48 16 27 O -0.93 -10.35 18.10 -57.81 -1.05 -11.40 16 28 C -0.14 -2.26 7.39 -25.92 -0.19 -2.45 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.39 10.22 7.91 -40.82 -0.32 9.90 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.41 7.90 -51.93 -0.41 1.00 16 33 H 0.08 1.10 7.85 -51.93 -0.41 0.69 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.40 3.64 8.47 -40.82 -0.35 3.29 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.10 0.77 7.84 -51.93 -0.41 0.36 16 38 H 0.08 0.14 8.09 -51.93 -0.42 -0.28 16 39 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.09 0.35 8.00 -51.93 -0.42 -0.07 16 42 H 0.14 0.19 8.14 -51.93 -0.42 -0.24 16 43 H 0.14 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 377.62 15.07 5.69 5.69 Total: -1.00 -37.53 377.62 -10.70 -48.23 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.34 Total: 7.40 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -1.64 Total: -12.39 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.10 Total: -54.13 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -1.99 Total: -32.06 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: 20.49 SS G_CDS: -0.50 Total: 19.98 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.53 -10.70 -48.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086106520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.573 kcal (2) G-P(sol) polarization free energy of solvation -37.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds