Wall clock time and date at job start Tue Mar 31 2020 06:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00334 * 2 1 4 4 H 1.48493 * 109.47567 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47010 * 300.00025 * 3 2 1 6 6 H 1.48510 * 109.46957 * 59.99545 * 3 2 1 7 7 C 1.38815 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99973 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99692 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.85385 * 23.80101 * 10 9 7 12 12 C 1.53781 * 113.61225 * 155.00127 * 10 9 7 13 13 C 1.53786 * 87.17350 * 139.93836 * 12 10 9 14 14 H 1.08993 * 113.61491 * 89.15923 * 13 12 10 15 15 C 1.52999 * 113.61361 * 220.06273 * 13 12 10 16 16 N 1.46494 * 109.47391 * 184.99937 * 15 13 12 17 17 C 1.34772 * 120.00463 * 180.02562 * 16 15 13 18 18 O 1.21281 * 119.99889 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00326 * 180.02562 * 17 16 15 20 20 H 1.08995 * 109.55020 * 39.79963 * 19 17 16 21 21 C 1.53043 * 109.54902 * 279.51497 * 19 17 16 22 22 C 1.52587 * 109.98473 * 176.49550 * 21 19 17 23 23 C 1.52581 * 110.64207 * 69.98852 * 22 21 19 24 24 C 1.53038 * 109.98493 * 290.00874 * 23 22 21 25 25 S 1.81668 * 108.99916 * 63.65130 * 24 23 22 26 26 O 1.42093 * 108.66242 * 191.37147 * 25 24 23 27 27 O 1.42101 * 108.66358 * 60.02857 * 25 24 23 28 28 C 1.53782 * 113.61191 * 252.49800 * 10 9 7 29 29 H 0.97003 * 119.99921 * 0.02562 * 1 2 3 30 30 H 0.96997 * 119.99530 * 0.02562 * 9 7 2 31 31 H 1.09002 * 113.61445 * 254.52836 * 12 10 9 32 32 H 1.09002 * 113.61408 * 25.34566 * 12 10 9 33 33 H 1.09002 * 109.47053 * 305.00261 * 15 13 12 34 34 H 1.09004 * 109.47121 * 64.99898 * 15 13 12 35 35 H 0.97000 * 119.99680 * 359.97438 * 16 15 13 36 36 H 1.09000 * 109.38178 * 296.65285 * 21 19 17 37 37 H 1.09000 * 109.38594 * 56.33429 * 21 19 17 38 38 H 1.08993 * 109.24199 * 309.68260 * 22 21 19 39 39 H 1.09002 * 109.23696 * 190.28155 * 22 21 19 40 40 H 1.09003 * 109.38711 * 169.85118 * 23 22 21 41 41 H 1.08999 * 109.39073 * 50.17191 * 23 22 21 42 42 H 1.09001 * 109.55058 * 303.79539 * 24 23 22 43 43 H 1.09001 * 109.54967 * 183.50734 * 24 23 22 44 44 H 1.08997 * 113.61668 * 334.56642 * 28 10 9 45 45 H 1.08998 * 113.61674 * 105.39151 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 3.0652 -3.5637 0.4077 12 6 1.2596 -4.8285 0.5970 13 6 1.8462 -5.6996 -0.5264 14 1 2.7958 -6.1668 -0.2660 15 6 0.8415 -6.6860 -1.1252 16 7 1.5214 -7.5462 -2.0967 17 6 0.8296 -8.4973 -2.7548 18 8 -0.3557 -8.6415 -2.5424 19 6 1.5291 -9.3826 -3.7539 20 1 2.5150 -9.6518 -3.3752 21 6 1.6747 -8.6388 -5.0835 22 6 2.4584 -9.4930 -6.0757 23 6 1.6310 -10.6949 -6.5217 24 6 1.4803 -11.6846 -5.3642 25 16 0.5491 -10.8885 -4.0228 26 8 0.6386 -11.7026 -2.8617 27 8 -0.7305 -10.5162 -4.5161 28 6 2.0001 -4.4027 -1.3419 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 -0.0002 31 1 1.5904 -5.1205 1.5938 32 1 0.1793 -4.6993 0.5305 33 1 0.4174 -7.2998 -0.3306 34 1 0.0440 -6.1348 -1.6234 35 1 2.4693 -7.4306 -2.2670 36 1 0.6856 -8.4277 -5.4900 37 1 2.2036 -7.7004 -4.9171 38 1 3.3752 -9.8437 -5.6020 39 1 2.7130 -8.8891 -6.9467 40 1 2.1295 -11.1877 -7.3564 41 1 0.6446 -10.3573 -6.8399 42 1 2.4664 -11.9746 -5.0015 43 1 0.9420 -12.5681 -5.7074 44 1 1.1222 -4.1578 -1.9398 45 1 2.9281 -4.3498 -1.9111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086106521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:39 Heat of formation + Delta-G solvation = -84.205045 kcal Electronic energy + Delta-G solvation = -26240.047516 eV Core-core repulsion = 22385.435197 eV Total energy + Delta-G solvation = -3854.612320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -40.25539 -38.61270 -37.72540 -36.97219 -36.25922 -34.88497 -33.39449 -32.57097 -30.31859 -28.85511 -27.11869 -25.14007 -24.60639 -23.81611 -21.60092 -21.20738 -21.06358 -19.25011 -19.05286 -17.89668 -17.31239 -17.06458 -16.71854 -16.05740 -15.83454 -15.67861 -15.14570 -14.96260 -14.72987 -14.39150 -14.32591 -13.85738 -13.69568 -13.54865 -13.18536 -12.94322 -12.49575 -12.32816 -12.29824 -12.15731 -11.96564 -11.91828 -11.87270 -11.55149 -11.46012 -11.28430 -11.08024 -10.88307 -10.70490 -10.57505 -10.38446 -10.15812 -10.01445 -9.87876 -9.55277 -9.20685 -8.90730 -6.99621 -5.81161 -3.10292 -0.45978 2.17325 2.30115 2.70992 3.40108 3.42731 3.45524 3.48109 3.52485 3.94107 3.97302 4.09402 4.23227 4.31141 4.42593 4.55340 4.62153 4.81916 4.89396 4.91211 4.95416 5.16643 5.17242 5.20168 5.37418 5.42294 5.42775 5.43959 5.57133 5.75570 5.77339 5.87480 6.05135 6.11770 6.25194 6.30140 6.35291 6.53437 6.76855 7.06296 7.15431 7.66394 7.83660 8.37263 9.48401 10.06490 10.40531 11.41217 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.025404 B = 0.002144 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.934268 B =13056.524333 C =13516.421997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.142 4.142 13 C -0.128 4.128 14 H 0.089 0.911 15 C 0.127 3.873 16 N -0.709 5.709 17 C 0.537 3.463 18 O -0.525 6.525 19 C -0.608 4.608 20 H 0.155 0.845 21 C -0.101 4.101 22 C -0.139 4.139 23 C -0.114 4.114 24 C -0.611 4.611 25 S 2.445 3.555 26 O -0.932 6.932 27 O -0.906 6.906 28 C -0.161 4.161 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.403 0.597 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.134 0.866 43 H 0.137 0.863 44 H 0.078 0.922 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.633 -25.081 -13.191 29.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.182 4.182 13 C -0.147 4.147 14 H 0.107 0.893 15 C 0.005 3.995 16 N -0.360 5.360 17 C 0.320 3.680 18 O -0.401 6.401 19 C -0.717 4.717 20 H 0.173 0.827 21 C -0.140 4.140 22 C -0.176 4.176 23 C -0.152 4.152 24 C -0.740 4.740 25 S 2.621 3.379 26 O -0.929 6.929 27 O -0.903 6.903 28 C -0.202 4.202 29 H 0.065 0.935 30 H 0.220 0.780 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.238 0.762 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.152 0.848 43 H 0.155 0.845 44 H 0.097 0.903 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.131 -25.238 -12.552 29.075 hybrid contribution 1.524 1.143 -0.445 1.956 sum 8.655 -24.095 -12.997 28.712 Atomic orbital electron populations 1.69669 1.05144 1.25683 1.57406 1.24781 0.95530 0.97825 1.02809 0.86120 0.78751 0.84091 0.77222 1.20553 1.21839 1.21821 1.19338 0.91069 0.84223 1.42944 0.91062 1.42425 1.05794 0.99884 1.86962 1.21504 0.95324 0.85071 0.92707 0.90653 1.23455 1.01152 0.96896 0.96695 1.22684 0.98333 0.94342 0.99388 0.89277 1.21596 0.95529 0.91581 0.90833 1.45909 1.13284 1.34639 1.42129 1.19142 0.86846 0.81264 0.80733 1.90898 1.14320 1.70024 1.64885 1.30727 1.16749 1.19876 1.04338 0.82726 1.21328 1.03769 0.99666 0.89212 1.21717 0.99048 0.96597 1.00245 1.21331 1.02833 0.94271 0.96746 1.30372 1.15843 1.11431 1.16331 1.07732 0.76796 0.76550 0.76777 1.93590 1.86890 1.65751 1.46720 1.93601 1.33898 1.82070 1.80747 1.23999 1.01351 0.94858 1.00029 0.93452 0.78033 0.91905 0.90011 0.91184 0.90661 0.76233 0.88871 0.88758 0.90404 0.89002 0.89217 0.89386 0.84808 0.84455 0.90297 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.24 -6.68 9.97 -15.06 -0.15 -6.83 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -17.52 5.40 -52.64 -0.28 -17.80 16 10 C 0.17 3.12 4.48 -67.12 -0.30 2.82 16 11 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 12 C -0.14 -2.20 7.39 -25.92 -0.19 -2.39 16 13 C -0.13 -1.62 3.76 -89.71 -0.34 -1.96 16 14 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 15 C 0.13 1.62 5.51 -4.05 -0.02 1.59 16 16 N -0.71 -7.43 5.56 -60.30 -0.33 -7.77 16 17 C 0.54 6.54 7.01 -10.99 -0.08 6.46 16 18 O -0.52 -8.89 15.42 -9.30 -0.14 -9.03 16 19 C -0.61 -4.60 2.81 -27.86 -0.08 -4.68 16 20 H 0.15 0.54 8.14 -51.93 -0.42 0.12 16 21 C -0.10 -0.57 5.00 -26.92 -0.13 -0.71 16 22 C -0.14 -0.42 5.63 -27.16 -0.15 -0.57 16 23 C -0.11 -0.41 5.73 -26.93 -0.15 -0.56 16 24 C -0.61 -2.61 6.35 37.18 0.24 -2.38 16 25 S 2.44 23.38 4.25 -107.50 -0.46 22.92 16 26 O -0.93 -12.24 18.10 -57.81 -1.05 -13.28 16 27 O -0.91 -12.39 17.11 -64.25 -1.10 -13.49 16 28 C -0.16 -2.53 7.44 -25.82 -0.19 -2.72 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.39 10.14 7.92 -40.82 -0.32 9.82 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.34 8.08 -51.93 -0.42 0.92 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.09 7.85 -51.93 -0.41 0.68 16 35 H 0.40 2.92 8.47 -40.82 -0.35 2.58 16 36 H 0.09 0.65 8.01 -51.93 -0.42 0.23 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.11 8.09 -51.93 -0.42 -0.31 16 39 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.09 0.37 8.01 -51.93 -0.42 -0.05 16 42 H 0.13 0.25 8.14 -51.93 -0.42 -0.18 16 43 H 0.14 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.08 1.38 7.90 -51.93 -0.41 0.97 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 376.33 15.07 5.67 5.67 Total: -1.00 -38.28 376.33 -11.00 -49.27 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -7.35 Total: 6.09 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -1.65 Total: -12.40 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 0.11 Total: -52.84 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -2.29 Total: -35.80 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 23.38 SS G_CDS: -0.46 Total: 22.92 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.28 -11.00 -49.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086106521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.930 kcal (2) G-P(sol) polarization free energy of solvation -38.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds