Wall clock time and date at job start Tue Mar 31 2020 06:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00334 * 2 1 4 4 H 1.48493 * 109.47567 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47010 * 300.00025 * 3 2 1 6 6 H 1.48510 * 109.46957 * 59.99545 * 3 2 1 7 7 C 1.38815 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99973 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99692 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.85385 * 23.80101 * 10 9 7 12 12 C 1.53781 * 113.61225 * 155.00127 * 10 9 7 13 13 C 1.53786 * 87.17350 * 139.93836 * 12 10 9 14 14 H 1.08993 * 113.61491 * 89.15923 * 13 12 10 15 15 C 1.52999 * 113.61361 * 220.06273 * 13 12 10 16 16 N 1.46494 * 109.47391 * 184.99937 * 15 13 12 17 17 C 1.34772 * 120.00463 * 180.02562 * 16 15 13 18 18 O 1.21281 * 119.99889 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00326 * 180.02562 * 17 16 15 20 20 H 1.08995 * 109.55020 * 39.79963 * 19 17 16 21 21 C 1.53043 * 109.54902 * 279.51497 * 19 17 16 22 22 C 1.52587 * 109.98473 * 176.49550 * 21 19 17 23 23 C 1.52581 * 110.64207 * 69.98852 * 22 21 19 24 24 C 1.53038 * 109.98493 * 290.00874 * 23 22 21 25 25 S 1.81668 * 108.99916 * 63.65130 * 24 23 22 26 26 O 1.42093 * 108.66242 * 191.37147 * 25 24 23 27 27 O 1.42101 * 108.66358 * 60.02857 * 25 24 23 28 28 C 1.53782 * 113.61191 * 252.49800 * 10 9 7 29 29 H 0.97003 * 119.99921 * 0.02562 * 1 2 3 30 30 H 0.96997 * 119.99530 * 0.02562 * 9 7 2 31 31 H 1.09002 * 113.61445 * 254.52836 * 12 10 9 32 32 H 1.09002 * 113.61408 * 25.34566 * 12 10 9 33 33 H 1.09002 * 109.47053 * 305.00261 * 15 13 12 34 34 H 1.09004 * 109.47121 * 64.99898 * 15 13 12 35 35 H 0.97000 * 119.99680 * 359.97438 * 16 15 13 36 36 H 1.09000 * 109.38178 * 296.65285 * 21 19 17 37 37 H 1.09000 * 109.38594 * 56.33429 * 21 19 17 38 38 H 1.08993 * 109.24199 * 309.68260 * 22 21 19 39 39 H 1.09002 * 109.23696 * 190.28155 * 22 21 19 40 40 H 1.09003 * 109.38711 * 169.85118 * 23 22 21 41 41 H 1.08999 * 109.39073 * 50.17191 * 23 22 21 42 42 H 1.09001 * 109.55058 * 303.79539 * 24 23 22 43 43 H 1.09001 * 109.54967 * 183.50734 * 24 23 22 44 44 H 1.08997 * 113.61668 * 334.56642 * 28 10 9 45 45 H 1.08998 * 113.61674 * 105.39151 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 3.0652 -3.5637 0.4077 12 6 1.2596 -4.8285 0.5970 13 6 1.8462 -5.6996 -0.5264 14 1 2.7958 -6.1668 -0.2660 15 6 0.8415 -6.6860 -1.1252 16 7 1.5214 -7.5462 -2.0967 17 6 0.8296 -8.4973 -2.7548 18 8 -0.3557 -8.6415 -2.5424 19 6 1.5291 -9.3826 -3.7539 20 1 2.5150 -9.6518 -3.3752 21 6 1.6747 -8.6388 -5.0835 22 6 2.4584 -9.4930 -6.0757 23 6 1.6310 -10.6949 -6.5217 24 6 1.4803 -11.6846 -5.3642 25 16 0.5491 -10.8885 -4.0228 26 8 0.6386 -11.7026 -2.8617 27 8 -0.7305 -10.5162 -4.5161 28 6 2.0001 -4.4027 -1.3419 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 -0.0002 31 1 1.5904 -5.1205 1.5938 32 1 0.1793 -4.6993 0.5305 33 1 0.4174 -7.2998 -0.3306 34 1 0.0440 -6.1348 -1.6234 35 1 2.4693 -7.4306 -2.2670 36 1 0.6856 -8.4277 -5.4900 37 1 2.2036 -7.7004 -4.9171 38 1 3.3752 -9.8437 -5.6020 39 1 2.7130 -8.8891 -6.9467 40 1 2.1295 -11.1877 -7.3564 41 1 0.6446 -10.3573 -6.8399 42 1 2.4664 -11.9746 -5.0015 43 1 0.9420 -12.5681 -5.7074 44 1 1.1222 -4.1578 -1.9398 45 1 2.9281 -4.3498 -1.9111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086106521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:32 Heat of formation + Delta-G solvation = -114.990337 kcal Electronic energy + Delta-G solvation = -26241.382467 eV Core-core repulsion = 22385.435197 eV Total energy + Delta-G solvation = -3855.947270 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 4.58 seconds Orbital eigenvalues (eV) -41.23921 -39.89873 -38.37077 -37.57487 -37.06343 -36.17575 -35.09833 -33.19134 -32.12684 -29.53519 -28.17381 -26.46403 -25.86188 -24.95116 -22.57602 -22.07519 -21.87327 -20.53954 -19.82292 -19.09865 -18.65629 -18.07992 -17.43232 -16.90689 -16.78800 -16.53704 -16.50435 -16.03933 -15.68811 -15.40480 -15.18182 -14.88532 -14.81395 -14.57735 -14.30740 -13.79813 -13.45583 -13.24448 -13.23332 -13.12561 -13.06358 -12.94912 -12.85569 -12.70873 -12.62752 -12.34893 -12.17019 -12.06249 -11.79077 -11.72883 -11.57563 -11.52722 -11.32711 -11.10598 -10.89736 -10.80387 -10.24265 -8.98221 -7.94817 -5.23330 -1.10162 1.27762 1.47333 1.48144 1.58164 1.67419 1.86643 2.56515 2.78961 2.94009 3.33920 3.38632 3.52289 3.68557 3.71815 3.73041 3.78615 3.89991 3.93502 4.06053 4.24192 4.27565 4.33895 4.39762 4.52356 4.54868 4.68200 4.71625 4.84164 4.94069 4.95304 4.97871 5.02610 5.14368 5.18956 5.21735 5.27096 5.36463 5.39107 5.52128 5.72113 6.27447 6.28774 6.99316 7.32816 8.11291 8.32634 9.29043 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.025404 B = 0.002144 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.934268 B =13056.524333 C =13516.421997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.973 3.027 4 H -0.262 1.262 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.239 4.239 8 H 0.081 0.919 9 N -0.731 5.731 10 C 0.143 3.857 11 H 0.084 0.916 12 C -0.140 4.140 13 C -0.094 4.094 14 H 0.128 0.872 15 C 0.130 3.870 16 N -0.694 5.694 17 C 0.525 3.475 18 O -0.583 6.583 19 C -0.592 4.592 20 H 0.205 0.795 21 C -0.104 4.104 22 C -0.135 4.135 23 C -0.122 4.122 24 C -0.570 4.570 25 S 2.411 3.589 26 O -0.985 6.985 27 O -0.970 6.970 28 C -0.152 4.152 29 H 0.250 0.750 30 H 0.371 0.629 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.049 0.951 35 H 0.423 0.577 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.121 0.879 41 H 0.072 0.928 42 H 0.175 0.825 43 H 0.153 0.847 44 H 0.054 0.946 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.264 -26.741 -14.782 33.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.274 4.274 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.371 4.371 8 H 0.099 0.901 9 N -0.368 5.368 10 C 0.034 3.966 11 H 0.102 0.898 12 C -0.180 4.180 13 C -0.113 4.113 14 H 0.145 0.855 15 C 0.007 3.993 16 N -0.346 5.346 17 C 0.310 3.690 18 O -0.464 6.464 19 C -0.702 4.702 20 H 0.222 0.778 21 C -0.143 4.143 22 C -0.172 4.172 23 C -0.160 4.160 24 C -0.704 4.704 25 S 2.597 3.403 26 O -0.982 6.982 27 O -0.967 6.967 28 C -0.192 4.192 29 H 0.058 0.942 30 H 0.202 0.798 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.262 0.738 36 H 0.086 0.914 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.139 0.861 41 H 0.091 0.909 42 H 0.193 0.807 43 H 0.171 0.829 44 H 0.072 0.928 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.812 -26.938 -14.115 32.626 hybrid contribution 0.152 1.583 -0.004 1.590 sum 11.964 -25.356 -14.119 31.391 Atomic orbital electron populations 1.69836 1.06799 1.25927 1.59891 1.25620 0.96361 1.01343 1.04057 0.85066 0.78417 0.79785 0.76460 1.18580 1.22309 1.22334 1.19778 0.91641 0.85284 1.40407 0.90093 1.42667 1.05356 1.01333 1.87491 1.21959 0.95645 0.83730 0.95269 0.89846 1.23354 0.99898 0.96119 0.98583 1.22512 0.99375 0.92857 0.96554 0.85456 1.21369 0.95242 0.91660 0.91074 1.45731 1.14102 1.33637 1.41100 1.19964 0.86428 0.81570 0.81002 1.90879 1.17164 1.71638 1.66728 1.30625 1.17799 1.17593 1.04195 0.77785 1.21463 1.03337 1.00801 0.88656 1.21780 0.99359 0.95954 1.00111 1.21510 1.02802 0.94613 0.97089 1.30108 1.16360 1.11092 1.12876 1.08231 0.77324 0.77135 0.77645 1.93519 1.87791 1.66854 1.50008 1.93525 1.38552 1.83118 1.81502 1.23754 1.01250 0.95736 0.98497 0.94154 0.79760 0.90278 0.91781 0.91592 0.93235 0.73840 0.91382 0.87455 0.87183 0.87481 0.86114 0.90895 0.80747 0.82919 0.92761 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 117. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.33 13.06 21.65 0.28 -60.05 16 2 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 3 Si 0.97 45.84 29.55 68.60 2.03 47.87 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 7 C -0.24 -13.07 9.97 84.03 0.84 -12.23 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.73 -36.44 5.40 -320.44 -1.73 -38.17 16 10 C 0.14 5.24 4.48 45.52 0.20 5.44 16 11 H 0.08 2.91 8.10 -2.39 -0.02 2.89 16 12 C -0.14 -4.20 7.39 31.12 0.23 -3.97 16 13 C -0.09 -2.16 3.76 -10.20 -0.04 -2.19 16 14 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 15 C 0.13 3.24 5.51 86.38 0.48 3.72 16 16 N -0.69 -13.35 5.56 -463.07 -2.57 -15.92 16 17 C 0.53 12.67 7.01 87.66 0.61 13.28 16 18 O -0.58 -21.11 15.42 11.18 0.17 -20.93 16 19 C -0.59 -7.77 2.81 29.86 0.08 -7.69 16 20 H 0.21 0.46 8.14 -2.39 -0.02 0.44 16 21 C -0.10 -0.91 5.00 30.47 0.15 -0.76 16 22 C -0.14 -0.17 5.63 30.32 0.17 0.00 16 23 C -0.12 -0.38 5.73 30.47 0.17 -0.20 16 24 C -0.57 -2.76 6.35 71.99 0.46 -2.30 16 25 S 2.41 45.95 4.25 -56.49 -0.24 45.71 16 26 O -0.98 -26.62 18.10 -127.39 -2.31 -28.92 16 27 O -0.97 -28.94 17.11 -121.23 -2.07 -31.01 16 28 C -0.15 -4.53 7.44 31.18 0.23 -4.30 16 29 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 30 H 0.37 20.30 7.92 -92.71 -0.73 19.56 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.06 2.16 8.08 -2.39 -0.02 2.15 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.05 1.50 7.85 -2.38 -0.02 1.48 16 35 H 0.42 4.51 8.47 -92.71 -0.79 3.73 16 36 H 0.07 0.95 8.01 -2.39 -0.02 0.93 16 37 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.11 -0.48 8.09 -2.39 -0.02 -0.50 16 39 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 40 H 0.12 -0.20 8.14 -2.39 -0.02 -0.22 16 41 H 0.07 0.49 8.01 -2.39 -0.02 0.47 16 42 H 0.17 -0.45 8.14 -2.39 -0.02 -0.47 16 43 H 0.15 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.05 1.91 7.90 -2.39 -0.02 1.89 16 45 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -91.74 376.33 -2.90 -94.64 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -0.52 Total: 22.25 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 4.06 Total: -15.46 kcal Atomic # 7 Polarization: -110.12 SS G_CDS: -4.02 Total: -114.14 kcal Atomic # 8 Polarization: -76.66 SS G_CDS: -4.21 Total: -80.87 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Atomic # 16 Polarization: 45.95 SS G_CDS: -0.24 Total: 45.71 kcal Total: -91.74 -2.90 -94.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086106521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.353 kcal (2) G-P(sol) polarization free energy of solvation -91.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.58 seconds