Wall clock time and date at job start Tue Mar 31 2020 06:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00511 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00070 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 H 1.09001 * 112.84874 * 23.79749 * 10 9 7 12 12 C 1.53782 * 113.61501 * 155.00075 * 10 9 7 13 13 C 1.53778 * 87.08116 * 89.11559 * 12 10 9 14 14 H 1.09000 * 113.61222 * 270.79577 * 13 12 10 15 15 C 1.53000 * 113.61406 * 139.98037 * 13 12 10 16 16 N 1.46499 * 109.47213 * 174.99947 * 15 13 12 17 17 C 1.34777 * 120.00177 * 180.02562 * 16 15 13 18 18 O 1.21275 * 119.99900 * 359.97438 * 17 16 15 19 19 C 1.50697 * 119.99770 * 179.97438 * 17 16 15 20 20 H 1.09000 * 109.55040 * 29.80630 * 19 17 16 21 21 C 1.53041 * 109.54821 * 149.99865 * 19 17 16 22 22 C 1.52589 * 109.98591 * 183.49908 * 21 19 17 23 23 C 1.52580 * 110.64642 * 290.01401 * 22 21 19 24 24 C 1.53044 * 109.98414 * 69.98832 * 23 22 21 25 25 S 1.81665 * 108.99775 * 296.34868 * 24 23 22 26 26 O 1.42094 * 108.66634 * 299.97299 * 25 24 23 27 27 O 1.42097 * 108.66434 * 168.62842 * 25 24 23 28 28 C 1.53778 * 87.08142 * 25.43184 * 13 12 10 29 29 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 31 31 H 1.09002 * 113.61173 * 203.66271 * 12 10 9 32 32 H 1.08993 * 113.61596 * 334.47445 * 12 10 9 33 33 H 1.08997 * 109.47480 * 294.99822 * 15 13 12 34 34 H 1.08999 * 109.47404 * 54.99911 * 15 13 12 35 35 H 0.97001 * 119.99874 * 359.97438 * 16 15 13 36 36 H 1.08996 * 109.38548 * 303.66083 * 21 19 17 37 37 H 1.09007 * 109.38261 * 63.34804 * 21 19 17 38 38 H 1.09000 * 109.24023 * 50.32026 * 22 21 19 39 39 H 1.09007 * 109.23960 * 169.71441 * 22 21 19 40 40 H 1.09000 * 109.38388 * 190.14379 * 23 22 21 41 41 H 1.08994 * 109.38856 * 309.82943 * 23 22 21 42 42 H 1.08998 * 109.55114 * 56.20887 * 24 23 22 43 43 H 1.09004 * 109.54572 * 176.49699 * 24 23 22 44 44 H 1.09000 * 113.61181 * 220.01620 * 28 13 12 45 45 H 1.09002 * 113.61288 * 89.11983 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 1 3.0670 -3.5630 0.4060 12 6 1.2622 -4.8275 0.6058 13 6 0.7171 -5.0809 -0.8096 14 1 -0.1953 -4.5273 -1.0316 15 6 0.6148 -6.5642 -1.1705 16 7 -0.0222 -6.7048 -2.4823 17 6 -0.2190 -7.9301 -3.0080 18 8 0.1316 -8.9162 -2.3953 19 6 -0.8747 -8.0747 -4.3571 20 1 -0.6492 -7.2004 -4.9678 21 6 -0.3478 -9.3333 -5.0503 22 6 -0.9398 -9.4430 -6.4524 23 6 -2.4287 -9.7693 -6.3837 24 6 -3.2045 -8.5628 -5.8501 25 16 -2.6730 -8.2245 -4.1462 26 8 -2.9434 -9.3696 -3.3496 27 8 -3.1911 -6.9619 -3.7504 28 6 1.9937 -4.4051 -1.3372 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3880 0.0092 31 1 1.8905 -5.6345 0.9827 32 1 0.4997 -4.5162 1.3197 33 1 1.6133 -7.0000 -1.2029 34 1 0.0172 -7.0806 -0.4192 35 1 -0.3029 -5.9160 -2.9721 36 1 0.7386 -9.2803 -5.1194 37 1 -0.6296 -10.2113 -4.4689 38 1 -0.8031 -8.4963 -6.9751 39 1 -0.4239 -10.2323 -6.9993 40 1 -2.7905 -10.0198 -7.3809 41 1 -2.5824 -10.6204 -5.7204 42 1 -3.0015 -7.6931 -6.4750 43 1 -4.2723 -8.7813 -5.8625 44 1 1.8206 -3.7528 -2.1931 45 1 2.8219 -5.0968 -1.4915 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086386293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:45 Heat of formation + Delta-G solvation = -82.589112 kcal Electronic energy + Delta-G solvation = -26475.567584 eV Core-core repulsion = 22621.025337 eV Total energy + Delta-G solvation = -3854.542247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -40.18553 -38.65209 -37.70744 -36.96517 -36.38176 -34.80536 -33.27086 -32.50605 -30.23963 -28.85161 -27.15035 -25.08212 -24.50628 -23.60486 -21.78659 -21.49842 -20.97702 -19.28410 -18.52750 -17.85623 -17.24977 -17.21482 -16.84802 -16.20787 -15.93540 -15.40768 -15.04745 -14.84333 -14.58062 -14.36607 -14.13457 -13.96603 -13.62473 -13.47525 -13.26264 -12.90391 -12.49651 -12.37913 -12.35772 -12.30305 -12.09032 -11.93740 -11.89788 -11.48039 -11.42614 -11.06472 -11.05501 -10.87297 -10.77169 -10.51263 -10.24194 -10.13351 -9.87037 -9.70596 -9.50534 -9.13647 -8.90423 -7.01191 -5.81438 -3.10780 -0.54923 2.14338 2.35761 2.72982 3.30591 3.40694 3.46536 3.47342 3.48815 3.90951 4.00799 4.10809 4.21632 4.38685 4.52876 4.54750 4.70896 4.87722 4.97546 5.02030 5.05207 5.21010 5.25610 5.26995 5.42266 5.44144 5.51331 5.59266 5.66494 5.69791 5.83140 5.91955 6.06726 6.18571 6.26669 6.36191 6.56687 6.72355 6.87306 7.02563 7.26461 7.68418 7.90957 8.37547 9.48248 10.05816 10.39966 11.40954 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.019884 B = 0.002434 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.821363 B =11500.108351 C =12001.241312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.168 3.832 11 H 0.063 0.937 12 C -0.148 4.148 13 C -0.122 4.122 14 H 0.096 0.904 15 C 0.128 3.872 16 N -0.714 5.714 17 C 0.526 3.474 18 O -0.516 6.516 19 C -0.602 4.602 20 H 0.156 0.844 21 C -0.092 4.092 22 C -0.141 4.141 23 C -0.114 4.114 24 C -0.602 4.602 25 S 2.422 3.578 26 O -0.915 6.915 27 O -0.924 6.924 28 C -0.169 4.169 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.407 0.593 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.067 0.933 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.911 -21.120 -15.871 26.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.345 5.345 10 C 0.055 3.945 11 H 0.081 0.919 12 C -0.187 4.187 13 C -0.141 4.141 14 H 0.115 0.885 15 C 0.005 3.995 16 N -0.366 5.366 17 C 0.308 3.692 18 O -0.392 6.392 19 C -0.711 4.711 20 H 0.174 0.826 21 C -0.131 4.131 22 C -0.178 4.178 23 C -0.152 4.152 24 C -0.732 4.732 25 S 2.600 3.400 26 O -0.912 6.912 27 O -0.921 6.921 28 C -0.210 4.210 29 H 0.065 0.935 30 H 0.220 0.780 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.242 0.758 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.155 0.845 43 H 0.157 0.843 44 H 0.086 0.914 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.008 -21.556 -14.605 26.345 hybrid contribution 0.357 1.464 -1.151 1.896 sum -3.651 -20.093 -15.756 25.793 Atomic orbital electron populations 1.69674 1.05122 1.25697 1.57424 1.24776 0.95548 0.97805 1.02791 0.86098 0.78779 0.83988 0.77195 1.20521 1.21863 1.21815 1.19330 0.91127 0.83952 1.42934 0.90951 1.42193 1.05742 0.99438 1.87096 1.21043 0.95126 0.85606 0.92677 0.91919 1.23449 1.00514 0.99707 0.95057 1.22756 0.99831 0.92671 0.98857 0.88542 1.21623 0.97678 0.97561 0.82648 1.46126 1.61086 1.07602 1.21772 1.19157 0.80697 0.84237 0.85119 1.90751 1.49938 1.37366 1.61104 1.30486 1.26993 1.09682 1.03917 0.82573 1.21218 1.03189 0.93904 0.94764 1.21747 0.95078 1.04087 0.96920 1.21342 0.94139 0.95617 1.04078 1.30265 1.11135 1.08496 1.23280 1.08311 0.77129 0.75886 0.78635 1.93624 1.81820 1.50985 1.64811 1.93652 1.75718 1.42342 1.80408 1.23903 0.95576 0.99657 1.01864 0.93452 0.78045 0.90404 0.91172 0.91059 0.91292 0.75766 0.89081 0.88604 0.90454 0.89127 0.89157 0.89430 0.84482 0.84325 0.91448 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 9 N -0.71 -17.35 5.31 -52.64 -0.28 -17.63 16 10 C 0.17 3.25 4.56 -67.12 -0.31 2.94 16 11 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 12 C -0.15 -2.37 7.39 -25.92 -0.19 -2.56 16 13 C -0.12 -1.85 3.63 -89.81 -0.33 -2.18 16 14 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 15 C 0.13 1.74 5.51 -4.04 -0.02 1.72 16 16 N -0.71 -8.97 5.56 -60.30 -0.33 -9.31 16 17 C 0.53 6.74 6.89 -10.99 -0.08 6.67 16 18 O -0.52 -8.33 16.25 5.56 0.09 -8.24 16 19 C -0.60 -5.06 2.80 -27.86 -0.08 -5.14 16 20 H 0.16 0.74 8.14 -51.93 -0.42 0.32 16 21 C -0.09 -0.63 4.55 -26.92 -0.12 -0.75 16 22 C -0.14 -0.53 5.63 -27.16 -0.15 -0.68 16 23 C -0.11 -0.45 5.73 -26.92 -0.15 -0.60 16 24 C -0.60 -2.81 6.35 37.18 0.24 -2.58 16 25 S 2.42 23.00 4.67 -107.50 -0.50 22.49 16 26 O -0.92 -12.16 17.92 -57.81 -1.04 -13.19 16 27 O -0.92 -11.84 18.10 -57.81 -1.05 -12.89 16 28 C -0.17 -2.76 7.43 -25.92 -0.19 -2.96 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.39 10.06 7.90 -40.82 -0.32 9.73 16 31 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 0.96 7.84 -51.93 -0.41 0.55 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.41 4.43 8.47 -40.82 -0.35 4.08 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.78 7.84 -51.92 -0.41 0.37 16 38 H 0.08 0.18 8.09 -51.93 -0.42 -0.24 16 39 H 0.09 0.23 8.14 -51.92 -0.42 -0.19 16 40 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.09 0.39 8.01 -51.93 -0.42 -0.03 16 42 H 0.14 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.14 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.07 0.98 7.90 -51.93 -0.41 0.57 16 LS Contribution 377.49 15.07 5.69 5.69 Total: -1.00 -37.02 377.49 -10.69 -47.72 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -7.34 Total: 8.73 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -1.63 Total: -13.38 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.11 Total: -54.04 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -1.99 Total: -34.32 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 23.00 SS G_CDS: -0.50 Total: 22.49 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.02 -10.69 -47.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086386293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.872 kcal (2) G-P(sol) polarization free energy of solvation -37.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds