Wall clock time and date at job start Tue Mar 31 2020 06:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 120.00129 * 2 1 4 4 H 1.48502 * 109.47093 * 270.00333 * 3 2 1 5 5 H 1.48496 * 109.47125 * 30.00246 * 3 2 1 6 6 H 1.48497 * 109.47319 * 150.00397 * 3 2 1 7 7 C 1.38809 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00117 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00206 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00326 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.91350 * 23.74461 * 10 9 7 12 12 C 1.53777 * 113.61798 * 155.00097 * 10 9 7 13 13 C 1.53788 * 87.08171 * 89.11350 * 12 10 9 14 14 H 1.09002 * 113.60940 * 270.80236 * 13 12 10 15 15 C 1.52999 * 113.61029 * 139.98489 * 13 12 10 16 16 N 1.46501 * 109.46730 * 176.52899 * 15 13 12 17 17 C 1.34776 * 119.99994 * 179.97438 * 16 15 13 18 18 O 1.21273 * 120.00153 * 0.02562 * 17 16 15 19 19 C 1.50708 * 119.99980 * 180.02562 * 17 16 15 20 20 H 1.09002 * 109.62390 * 335.24266 * 19 17 16 21 21 C 1.53036 * 109.55019 * 215.00485 * 19 17 16 22 22 C 1.52586 * 109.98633 * 176.49649 * 21 19 17 23 23 C 1.52585 * 110.64186 * 69.98567 * 22 21 19 24 24 C 1.53033 * 109.98499 * 290.01286 * 23 22 21 25 25 S 1.81664 * 109.54961 * 95.48342 * 19 17 16 26 26 O 1.42102 * 108.66207 * 59.82498 * 25 19 17 27 27 O 1.42098 * 108.75126 * 288.51871 * 25 19 17 28 28 C 1.53779 * 87.16872 * 25.39180 * 13 12 10 29 29 H 0.97002 * 119.99422 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99212 * 0.02562 * 9 7 2 31 31 H 1.09006 * 113.61047 * 334.57081 * 12 10 9 32 32 H 1.08997 * 113.69472 * 203.67569 * 12 10 9 33 33 H 1.09000 * 109.47442 * 56.53429 * 15 13 12 34 34 H 1.09001 * 109.47026 * 296.52577 * 15 13 12 35 35 H 0.97001 * 120.00317 * 0.02562 * 16 15 13 36 36 H 1.09002 * 109.38714 * 56.33723 * 21 19 17 37 37 H 1.09005 * 109.38125 * 296.65535 * 21 19 17 38 38 H 1.08999 * 109.24317 * 190.28247 * 22 21 19 39 39 H 1.09001 * 109.24332 * 309.68506 * 22 21 19 40 40 H 1.09007 * 109.38811 * 50.17217 * 23 22 21 41 41 H 1.08998 * 109.38500 * 169.85381 * 23 22 21 42 42 H 1.09005 * 109.55165 * 183.50477 * 24 23 22 43 43 H 1.09001 * 109.55395 * 303.79133 * 24 23 22 44 44 H 1.08998 * 113.61009 * 89.16001 * 28 13 12 45 45 H 1.08998 * 113.61073 * 220.05296 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 3.0661 -3.5648 0.4037 12 6 1.2602 -4.8288 0.5949 13 6 0.7205 -5.0791 -0.8232 14 1 -0.1911 -4.5250 -1.0475 15 6 0.6196 -6.5616 -1.1877 16 7 0.0210 -6.6977 -2.5179 17 6 -0.1669 -7.9215 -3.0503 18 8 0.1591 -8.9101 -2.4281 19 6 -0.7822 -8.0615 -4.4190 20 1 -1.3925 -7.1851 -4.6373 21 6 -1.6556 -9.3173 -4.4618 22 6 -2.3523 -9.4222 -5.8152 23 6 -1.3458 -9.7492 -6.9144 24 6 -0.4354 -8.5449 -7.1650 25 16 0.5323 -8.2125 -5.6638 26 8 1.3137 -9.3606 -5.3630 27 8 1.1738 -6.9526 -5.8059 28 6 1.9978 -4.4014 -1.3467 29 1 -0.4849 0.8401 0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 0.4938 -4.5189 1.3054 32 1 1.8858 -5.6373 0.9730 33 1 -0.0033 -7.0744 -0.4549 34 1 1.6159 -7.0036 -1.1907 35 1 -0.2394 -5.9070 -3.0158 36 1 -2.4052 -9.2638 -3.6722 37 1 -1.0315 -10.1975 -4.3069 38 1 -3.1051 -10.2093 -5.7718 39 1 -2.8382 -8.4735 -6.0436 40 1 -0.7408 -10.6028 -6.6088 41 1 -1.8797 -9.9962 -7.8320 42 1 0.2393 -8.7636 -7.9928 43 1 -1.0425 -7.6729 -7.4081 44 1 2.8266 -5.0923 -1.5010 45 1 1.8261 -3.7472 -2.2014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086386294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:51 Heat of formation + Delta-G solvation = -82.489735 kcal Electronic energy + Delta-G solvation = -26512.467778 eV Core-core repulsion = 22657.929840 eV Total energy + Delta-G solvation = -3854.537938 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -40.18585 -38.63312 -37.69761 -36.96002 -36.37006 -34.80391 -33.26448 -32.50791 -30.23255 -28.84862 -27.14529 -25.05828 -24.51160 -23.60455 -21.78504 -21.50805 -20.97334 -19.27390 -18.51573 -17.82853 -17.24599 -17.23480 -16.83698 -16.22652 -15.92703 -15.27231 -15.17258 -14.81788 -14.56501 -14.39871 -14.09607 -13.96128 -13.63350 -13.48999 -13.25179 -12.88863 -12.48334 -12.36638 -12.34689 -12.29313 -12.10770 -11.93079 -11.87627 -11.48502 -11.42358 -11.06467 -11.04714 -10.84963 -10.76114 -10.50718 -10.23709 -10.15835 -9.84776 -9.69511 -9.50699 -9.13370 -8.88712 -7.00560 -5.81408 -3.10229 -0.54226 2.15371 2.35461 2.73069 3.32524 3.42113 3.47521 3.47572 3.48947 3.91078 4.00706 4.10514 4.22100 4.38179 4.52448 4.55681 4.70483 4.87363 4.97881 5.02597 5.05012 5.21220 5.25318 5.26458 5.41887 5.44872 5.50404 5.59665 5.67173 5.68949 5.81807 5.93137 6.07116 6.22050 6.26901 6.37176 6.57720 6.76652 6.88344 7.04409 7.26222 7.69170 7.90818 8.37991 9.48713 10.06012 10.40271 11.41126 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.019783 B = 0.002462 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.019212 B =11370.116891 C =11849.722814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.168 3.832 11 H 0.063 0.937 12 C -0.147 4.147 13 C -0.122 4.122 14 H 0.094 0.906 15 C 0.127 3.873 16 N -0.713 5.713 17 C 0.526 3.474 18 O -0.516 6.516 19 C -0.602 4.602 20 H 0.155 0.845 21 C -0.093 4.093 22 C -0.141 4.141 23 C -0.113 4.113 24 C -0.602 4.602 25 S 2.423 3.577 26 O -0.914 6.914 27 O -0.924 6.924 28 C -0.171 4.171 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.407 0.593 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.069 0.931 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.764 -21.084 -14.557 26.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.081 0.919 12 C -0.186 4.186 13 C -0.140 4.140 14 H 0.112 0.888 15 C 0.005 3.995 16 N -0.365 5.365 17 C 0.308 3.692 18 O -0.392 6.392 19 C -0.711 4.711 20 H 0.173 0.827 21 C -0.131 4.131 22 C -0.178 4.178 23 C -0.152 4.152 24 C -0.732 4.732 25 S 2.601 3.399 26 O -0.911 6.911 27 O -0.921 6.921 28 C -0.212 4.212 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.242 0.758 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.157 0.843 43 H 0.155 0.845 44 H 0.088 0.912 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.491 -21.522 -13.925 26.215 hybrid contribution -1.022 1.467 -0.530 1.865 sum -6.512 -20.055 -14.455 25.565 Atomic orbital electron populations 1.69664 1.05140 1.25757 1.57617 1.24761 0.95552 0.97798 1.02816 0.86160 0.78669 0.83643 0.77548 1.21666 1.21783 1.20687 1.19303 0.91154 0.83958 1.42792 0.90959 1.42171 1.05671 0.99458 1.87128 1.21087 0.95141 0.85546 0.92702 0.91850 1.23440 1.00514 0.99761 0.94918 1.22741 0.99831 0.92619 0.98840 0.88754 1.21624 0.98330 0.97580 0.82002 1.46109 1.62660 1.07576 1.20114 1.19155 0.79653 0.84272 0.86123 1.90763 1.50070 1.37101 1.61217 1.30484 1.18907 1.09637 1.12040 0.82705 1.21224 0.98981 0.93971 0.98948 1.21743 0.98845 1.04096 0.93129 1.21340 0.97224 0.95654 1.00946 1.30269 1.13984 1.08474 1.20485 1.08303 0.77122 0.75897 0.78594 1.93625 1.63999 1.50770 1.82727 1.93651 1.70753 1.42632 1.85095 1.23949 0.95623 0.99741 1.01857 0.93470 0.78133 0.91268 0.90374 0.91319 0.91065 0.75815 0.89116 0.88561 0.89122 0.90444 0.89424 0.89167 0.84343 0.84510 0.91233 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.77 13.06 55.49 0.72 -27.04 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.71 -17.37 5.31 -52.55 -0.28 -17.64 16 10 C 0.17 3.28 4.57 -67.03 -0.31 2.98 16 11 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 12 C -0.15 -2.34 7.39 -25.92 -0.19 -2.53 16 13 C -0.12 -1.83 3.62 -89.80 -0.33 -2.15 16 14 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 15 C 0.13 1.73 5.50 -4.04 -0.02 1.70 16 16 N -0.71 -8.88 5.56 -60.29 -0.33 -9.22 16 17 C 0.53 6.73 6.83 -10.98 -0.07 6.66 16 18 O -0.52 -8.35 16.35 5.56 0.09 -8.26 16 19 C -0.60 -5.06 2.81 -27.86 -0.08 -5.14 16 20 H 0.16 0.73 8.11 -51.93 -0.42 0.31 16 21 C -0.09 -0.63 4.62 -26.92 -0.12 -0.75 16 22 C -0.14 -0.53 5.63 -27.16 -0.15 -0.68 16 23 C -0.11 -0.45 5.73 -26.93 -0.15 -0.60 16 24 C -0.60 -2.84 6.35 37.17 0.24 -2.60 16 25 S 2.42 23.22 4.67 -107.50 -0.50 22.72 16 26 O -0.91 -12.21 17.92 -57.82 -1.04 -13.25 16 27 O -0.92 -12.00 18.11 -57.82 -1.05 -13.05 16 28 C -0.17 -2.92 7.44 -25.83 -0.19 -3.12 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.38 9.95 7.90 -40.82 -0.32 9.62 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.01 7.87 -51.93 -0.41 0.60 16 35 H 0.41 4.34 8.45 -40.82 -0.34 3.99 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.78 7.84 -51.93 -0.41 0.37 16 38 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.08 0.18 8.09 -51.93 -0.42 -0.24 16 40 H 0.09 0.39 8.01 -51.93 -0.42 -0.03 16 41 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.14 0.49 8.14 -51.92 -0.42 0.07 16 43 H 0.14 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 1.09 7.92 -51.93 -0.41 0.68 16 45 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 377.59 15.07 5.69 5.69 Total: -1.00 -37.12 377.59 -10.69 -47.81 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -7.34 Total: 8.52 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -1.63 Total: -13.49 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.11 Total: -53.90 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -1.99 Total: -34.55 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: 23.22 SS G_CDS: -0.50 Total: 22.72 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.12 -10.69 -47.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086386294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.682 kcal (2) G-P(sol) polarization free energy of solvation -37.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds