Wall clock time and date at job start Tue Mar 31 2020 06:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00080 * 2 1 4 4 H 1.48505 * 109.47078 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47092 * 299.99698 * 3 2 1 6 6 H 1.48493 * 109.47235 * 60.00013 * 3 2 1 7 7 C 1.38812 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00309 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99884 * 179.72354 * 9 7 2 11 11 H 1.08992 * 109.48676 * 325.27272 * 10 9 7 12 12 C 1.52880 * 109.48468 * 85.31269 * 10 9 7 13 13 C 1.53953 * 109.72557 * 192.85885 * 12 10 9 14 14 C 1.52448 * 110.72776 * 44.36248 * 13 12 10 15 15 C 1.53800 * 109.40990 * 246.26418 * 14 13 12 16 16 C 1.52344 * 109.15769 * 77.83966 * 15 14 13 17 17 N 1.46957 * 109.09462 * 287.30522 * 16 15 14 18 18 C 1.34780 * 120.36784 * 291.67442 * 17 16 15 19 19 O 1.21279 * 119.99418 * 355.10501 * 18 17 16 20 20 C 1.50700 * 119.99970 * 175.10313 * 18 17 16 21 21 C 1.53045 * 113.14987 * 258.63242 * 20 18 17 22 22 S 1.81424 * 89.88850 * 211.85378 * 21 20 18 23 23 O 1.42098 * 112.75701 * 280.47768 * 22 21 20 24 24 O 1.42105 * 112.82940 * 136.71587 * 22 21 20 25 25 C 1.53046 * 113.14650 * 158.26362 * 20 18 17 26 26 C 1.45322 * 119.25892 * 111.65372 * 17 16 15 27 27 H 0.97004 * 120.00094 * 359.97438 * 1 2 3 28 28 H 0.97004 * 120.00023 * 0.02562 * 9 7 2 29 29 H 1.08999 * 109.42572 * 312.93542 * 12 10 9 30 30 H 1.09003 * 109.42839 * 72.77795 * 12 10 9 31 31 H 1.09003 * 109.22433 * 164.68089 * 13 12 10 32 32 H 1.09001 * 109.22771 * 284.08285 * 13 12 10 33 33 H 1.08997 * 109.47815 * 6.24485 * 14 13 12 34 34 H 1.08998 * 109.48379 * 126.27807 * 14 13 12 35 35 H 1.08999 * 109.52294 * 197.73823 * 15 14 13 36 36 H 1.08992 * 109.52373 * 317.93647 * 15 14 13 37 37 H 1.09006 * 109.53469 * 47.19270 * 16 15 14 38 38 H 1.09003 * 109.53094 * 167.34140 * 16 15 14 39 39 H 1.08995 * 112.49719 * 28.47823 * 20 18 17 40 40 H 1.08999 * 113.15169 * 327.11665 * 21 20 18 41 41 H 1.09005 * 113.13971 * 96.59672 * 21 20 18 42 42 H 1.08999 * 113.14773 * 263.40373 * 25 20 18 43 43 H 1.09000 * 113.14918 * 32.84925 * 25 20 18 44 44 H 1.08995 * 109.65993 * 196.89584 * 26 17 16 45 45 H 1.08993 * 109.68704 * 76.35849 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0050 11 1 2.9689 -3.5481 -0.5936 12 6 2.4205 -4.0427 1.4292 13 6 3.4528 -5.1847 1.4150 14 6 4.5424 -4.9143 0.3837 15 6 4.4536 -5.9606 -0.7401 16 6 3.3091 -5.5931 -1.6760 17 7 2.0314 -5.8657 -1.0031 18 6 1.6552 -7.1335 -0.7430 19 8 2.3283 -8.0598 -1.1426 20 6 0.3982 -7.4000 0.0444 21 6 0.6691 -7.7553 1.5082 22 16 -0.7963 -8.8249 1.5161 23 8 -2.0073 -8.0970 1.6667 24 8 -0.5688 -10.0668 2.1684 25 6 -0.1707 -8.8019 -0.1867 26 6 1.1783 -4.7530 -0.6208 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3881 -0.0002 29 1 2.8431 -3.1783 1.9414 30 1 1.5233 -4.3713 1.9540 31 1 3.9065 -5.2708 2.4023 32 1 2.9501 -6.1199 1.1682 33 1 4.4063 -3.9176 -0.0360 34 1 5.5196 -4.9770 0.8624 35 1 5.3898 -5.9760 -1.2982 36 1 4.2695 -6.9442 -0.3082 37 1 3.3698 -4.5342 -1.9278 38 1 3.3772 -6.1887 -2.5864 39 1 -0.3442 -6.6111 -0.0755 40 1 1.6005 -8.3033 1.6509 41 1 0.5799 -6.9013 2.1798 42 1 -0.9632 -8.8247 -0.9347 43 1 0.5988 -9.5515 -0.3714 44 1 0.4439 -5.0886 0.1112 45 1 0.6679 -4.3624 -1.5011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088320398.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:50 Heat of formation + Delta-G solvation = -57.607560 kcal Electronic energy + Delta-G solvation = -28184.830780 eV Core-core repulsion = 24331.371815 eV Total energy + Delta-G solvation = -3853.458966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.77758 -38.11507 -37.59543 -36.41983 -35.96349 -34.64640 -34.14654 -32.27140 -30.12440 -27.55534 -26.97027 -26.45128 -24.64360 -23.48596 -22.11621 -21.65649 -19.56826 -19.12863 -18.62234 -17.87432 -17.19734 -16.81688 -16.57214 -16.14473 -15.83686 -15.64364 -14.95472 -14.59800 -14.33209 -14.04780 -13.93095 -13.56767 -13.43138 -13.41081 -12.98529 -12.85195 -12.53458 -12.50879 -12.36301 -12.26804 -11.84151 -11.70203 -11.38354 -11.21413 -11.08930 -11.00198 -10.90851 -10.77177 -10.65498 -10.48057 -10.30844 -10.25224 -10.08272 -9.77870 -9.59715 -8.99626 -8.43166 -7.08281 -5.87481 -3.17480 -0.17364 1.62274 2.46950 2.94682 3.35635 3.36349 3.42532 3.44534 3.75638 3.95040 4.23675 4.47443 4.56375 4.58489 4.86858 4.93365 5.00766 5.06461 5.08727 5.30033 5.31673 5.41505 5.42190 5.54466 5.55776 5.62582 5.70327 5.78236 5.79443 5.91262 6.00496 6.12785 6.15932 6.23426 6.40828 6.47257 6.53326 6.63184 6.84404 6.93220 7.44940 7.60306 8.10456 8.30244 9.42021 9.96221 10.30606 11.34802 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014993 B = 0.003739 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.101298 B = 7486.105392 C = 8529.358013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.723 5.723 10 C 0.156 3.844 11 H 0.069 0.931 12 C -0.135 4.135 13 C -0.119 4.119 14 C -0.127 4.127 15 C -0.135 4.135 16 C 0.114 3.886 17 N -0.590 5.590 18 C 0.542 3.458 19 O -0.539 6.539 20 C -0.101 4.101 21 C -0.589 4.589 22 S 2.416 3.584 23 O -0.908 6.908 24 O -0.923 6.923 25 C -0.581 4.581 26 C 0.089 3.911 27 H 0.256 0.744 28 H 0.384 0.616 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.135 0.865 40 H 0.149 0.851 41 H 0.135 0.865 42 H 0.128 0.872 43 H 0.156 0.844 44 H 0.080 0.920 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.397 -16.782 0.365 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.046 3.954 11 H 0.087 0.913 12 C -0.175 4.175 13 C -0.158 4.158 14 C -0.165 4.165 15 C -0.173 4.173 16 C -0.008 4.008 17 N -0.322 5.322 18 C 0.328 3.672 19 O -0.417 6.417 20 C -0.125 4.125 21 C -0.717 4.717 22 S 2.596 3.404 23 O -0.905 6.905 24 O -0.920 6.920 25 C -0.710 4.710 26 C -0.035 4.035 27 H 0.066 0.934 28 H 0.218 0.782 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.152 0.848 40 H 0.168 0.832 41 H 0.154 0.846 42 H 0.147 0.853 43 H 0.174 0.826 44 H 0.099 0.901 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.002 -17.558 0.851 17.693 hybrid contribution 0.923 1.681 -0.594 2.008 sum 2.925 -15.877 0.257 16.146 Atomic orbital electron populations 1.69657 1.05109 1.25722 1.57289 1.24730 0.95483 0.97688 1.02675 0.86156 0.78815 0.84167 0.77249 1.20542 1.21831 1.21825 1.19204 0.90943 0.83820 1.43201 0.91128 1.42340 1.05783 0.99503 1.88792 1.20921 0.94967 0.85678 0.93868 0.91312 1.22457 0.97613 0.97487 0.99973 1.21753 0.96730 0.99268 0.98007 1.21830 0.98354 0.99853 0.96436 1.22031 0.97856 0.99877 0.97566 1.21583 0.81946 1.02240 0.95031 1.47724 1.20930 1.05555 1.58004 1.19525 0.85531 0.82575 0.79604 1.90662 1.55302 1.43244 1.52481 1.21661 0.99214 0.97601 0.93994 1.30951 1.22487 1.17309 1.00927 1.08300 0.76834 0.76086 0.79176 1.93747 1.39866 1.72674 1.84202 1.93648 1.86579 1.40149 1.71657 1.30911 1.12029 1.02893 1.25168 1.22209 0.93593 0.87228 1.00431 0.93439 0.78248 0.91448 0.93112 0.93360 0.92461 0.90398 0.92705 0.91358 0.90963 0.88868 0.91225 0.84758 0.83240 0.84645 0.85302 0.82640 0.90135 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.55 13.06 55.49 0.72 -25.83 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 21.34 29.55 -169.99 -5.02 16.32 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.14 9.91 -15.06 -0.15 -6.28 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.72 -16.12 5.12 -53.26 -0.27 -16.39 16 10 C 0.16 2.63 2.29 -67.76 -0.16 2.48 16 11 H 0.07 1.19 3.29 -51.93 -0.17 1.02 16 12 C -0.13 -2.12 5.33 -26.30 -0.14 -2.26 16 13 C -0.12 -1.58 5.41 -26.52 -0.14 -1.72 16 14 C -0.13 -1.63 5.49 -26.60 -0.15 -1.77 16 15 C -0.14 -1.63 5.56 -26.65 -0.15 -1.78 16 16 C 0.11 1.44 5.17 -4.13 -0.02 1.42 16 17 N -0.59 -7.60 1.68 -174.37 -0.29 -7.90 16 18 C 0.54 6.89 5.47 -10.98 -0.06 6.83 16 19 O -0.54 -8.11 14.96 5.56 0.08 -8.03 16 20 C -0.10 -0.98 2.91 -91.72 -0.27 -1.25 16 21 C -0.59 -4.64 7.16 37.18 0.27 -4.38 16 22 S 2.42 18.77 7.55 -107.50 -0.81 17.96 16 23 O -0.91 -9.91 18.18 -57.31 -1.04 -10.95 16 24 O -0.92 -10.03 18.18 -57.31 -1.04 -11.07 16 25 C -0.58 -4.46 7.34 37.18 0.27 -4.18 16 26 C 0.09 1.24 5.28 -4.44 -0.02 1.22 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.38 9.15 7.80 -40.82 -0.32 8.83 16 29 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 30 H 0.05 0.77 7.87 -51.93 -0.41 0.36 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.73 5.05 -51.93 -0.26 0.46 16 33 H 0.08 1.11 5.47 -51.93 -0.28 0.83 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.96 6.36 -51.93 -0.33 0.63 16 37 H 0.09 1.20 6.07 -51.93 -0.32 0.89 16 38 H 0.07 0.86 8.05 -51.93 -0.42 0.45 16 39 H 0.13 1.14 6.30 -51.93 -0.33 0.82 16 40 H 0.15 1.12 8.11 -51.93 -0.42 0.70 16 41 H 0.14 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.13 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.16 1.26 7.44 -51.93 -0.39 0.87 16 44 H 0.08 0.99 5.34 -51.93 -0.28 0.72 16 45 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 352.68 15.07 5.31 5.31 Total: -1.00 -34.39 352.68 -9.60 -43.99 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.42 Total: 8.61 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -0.81 Total: -12.02 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.16 Total: -50.12 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -2.00 Total: -30.06 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 18.77 SS G_CDS: -0.81 Total: 17.96 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.39 -9.60 -43.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088320398.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.618 kcal (2) G-P(sol) polarization free energy of solvation -34.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds