Wall clock time and date at job start Tue Mar 31 2020 05:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 120.00372 * 2 1 4 4 H 1.48504 * 109.46693 * 272.94320 * 3 2 1 5 5 H 1.48499 * 109.46985 * 32.93998 * 3 2 1 6 6 H 1.48495 * 109.46981 * 152.94480 * 3 2 1 7 7 C 1.38816 * 119.99457 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00150 * 339.34837 * 7 2 1 9 9 N 1.36942 * 119.99496 * 159.34404 * 7 2 1 10 10 C 1.46929 * 120.62412 * 152.60920 * 9 7 2 11 11 C 1.53187 * 108.77084 * 126.41661 * 10 9 7 12 12 C 1.53039 * 109.31760 * 54.63100 * 11 10 9 13 13 H 1.09004 * 109.44751 * 58.64912 * 12 11 10 14 14 N 1.46501 * 109.46170 * 178.61434 * 12 11 10 15 15 C 1.34779 * 119.99943 * 275.06616 * 14 12 11 16 16 O 1.21568 * 119.99796 * 0.02562 * 15 14 12 17 17 C 1.47714 * 120.00017 * 179.97438 * 15 14 12 18 18 C 1.41503 * 126.51738 * 180.02562 * 17 15 14 19 19 C 1.35361 * 105.50182 * 179.76105 * 18 17 15 20 20 N 1.35033 * 107.22713 * 0.24023 * 19 18 17 21 21 C 1.46508 * 124.88345 * 180.02562 * 20 19 18 22 22 F 1.39905 * 109.46745 * 300.00024 * 21 20 19 23 23 F 1.39897 * 109.47128 * 59.99599 * 21 20 19 24 24 N 1.28470 * 110.23447 * 359.97438 * 20 19 18 25 25 C 1.53040 * 109.53630 * 298.63419 * 12 11 10 26 26 H 1.08991 * 109.49724 * 301.37713 * 25 12 11 27 27 O 1.42906 * 109.49509 * 181.31593 * 25 12 11 28 28 C 1.46922 * 120.63049 * 332.63113 * 9 7 2 29 29 H 0.97006 * 119.99561 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.58251 * 246.19706 * 10 9 7 31 31 H 1.08993 * 109.58789 * 6.62680 * 10 9 7 32 32 H 1.09010 * 109.49853 * 294.67730 * 11 10 9 33 33 H 1.09004 * 109.49469 * 174.58674 * 11 10 9 34 34 H 0.96996 * 120.00078 * 95.06528 * 14 12 11 35 35 H 1.08003 * 127.24849 * 0.02562 * 18 17 15 36 36 H 1.07993 * 126.38684 * 180.22503 * 19 18 17 37 37 H 1.08995 * 109.47305 * 180.02562 * 21 20 19 38 38 H 0.96702 * 113.99530 * 180.02562 * 27 25 12 39 39 H 1.09001 * 109.58577 * 113.80344 * 28 9 7 40 40 H 1.08993 * 109.70880 * 353.44453 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4356 2.0822 -1.3983 5 1 1.4803 2.6339 0.7613 6 1 3.5776 1.4228 0.6368 7 6 2.0102 -1.2022 0.0005 8 1 1.5222 -2.1073 0.3308 9 7 3.3136 -1.2406 -0.4178 10 6 4.2349 -2.2632 0.0962 11 6 4.8751 -2.9910 -1.0900 12 6 5.5288 -1.9661 -2.0197 13 1 6.2779 -1.3999 -1.4662 14 7 6.1706 -2.6614 -3.1382 15 6 7.4210 -3.1456 -3.0024 16 8 8.0161 -3.0059 -1.9515 17 6 8.0680 -3.8471 -4.1299 18 6 9.3673 -4.4075 -4.1389 19 6 9.5214 -4.9438 -5.3722 20 7 8.3807 -4.7092 -6.0557 21 6 8.1308 -5.1274 -7.4374 22 9 9.0813 -4.5422 -8.2809 23 9 8.2228 -6.5205 -7.5269 24 7 7.5457 -4.0676 -5.3198 25 6 4.4621 -1.0100 -2.5583 26 1 3.6999 -1.5783 -3.0911 27 8 5.0685 -0.0725 -3.4502 28 6 3.8173 -0.2596 -1.3888 29 1 -0.4850 0.8401 -0.0004 30 1 5.0114 -1.7874 0.6952 31 1 3.6839 -2.9768 0.7086 32 1 4.1085 -3.5408 -1.6362 33 1 5.6315 -3.6859 -0.7252 34 1 5.6957 -2.7732 -3.9765 35 1 10.0834 -4.4107 -3.3305 36 1 10.3941 -5.4623 -5.7408 37 1 7.1330 -4.8087 -7.7387 38 1 4.4495 0.5660 -3.8300 39 1 4.5597 0.3794 -0.9109 40 1 2.9924 0.3505 -1.7565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090295866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:49 Heat of formation + Delta-G solvation = -62.059397 kcal Electronic energy + Delta-G solvation = -28355.520287 eV Core-core repulsion = 23844.487545 eV Total energy + Delta-G solvation = -4511.032742 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.00022 -48.08601 -43.02359 -39.75948 -38.07999 -35.52122 -34.52656 -33.35034 -32.21711 -31.26695 -30.14524 -29.19249 -27.14764 -25.25992 -23.57518 -22.88840 -22.02486 -21.61632 -20.21771 -19.75587 -19.13942 -18.54965 -18.13578 -17.53428 -16.93352 -16.77841 -16.24509 -15.93348 -15.16024 -14.89748 -14.80089 -14.49645 -14.39791 -14.36803 -14.30047 -14.02199 -13.76218 -13.51404 -13.34519 -12.87323 -12.71552 -12.46347 -12.39155 -12.15006 -11.48950 -11.38696 -11.02796 -10.91197 -10.53132 -10.38368 -10.21606 -9.94039 -9.79611 -9.66479 -9.65605 -9.53275 -8.86571 -8.69962 -7.09272 -6.02988 -3.40189 1.07330 1.24623 1.74340 2.87282 3.13392 3.23540 3.31577 3.44194 3.47120 3.47952 3.94040 4.21486 4.26258 4.35424 4.45374 4.80560 4.89717 5.16211 5.21220 5.27259 5.36248 5.43090 5.59945 5.75450 5.79294 5.86397 6.00350 6.03552 6.22367 6.25915 6.38197 6.49191 6.56198 6.64828 6.80937 7.21675 7.63800 7.78079 7.93878 8.22900 8.24936 8.84011 9.62490 9.98466 11.12578 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.023614 B = 0.002647 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.430282 B =10576.441369 C =10843.329162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.024 3.976 3 Si 0.881 3.119 4 H -0.289 1.289 5 H -0.301 1.301 6 H -0.269 1.269 7 C -0.263 4.263 8 H 0.089 0.911 9 N -0.602 5.602 10 C 0.148 3.852 11 C -0.142 4.142 12 C 0.161 3.839 13 H 0.092 0.908 14 N -0.698 5.698 15 C 0.601 3.399 16 O -0.529 6.529 17 C 0.020 3.980 18 C -0.168 4.168 19 C -0.003 4.003 20 N -0.350 5.350 21 C 0.497 3.503 22 F -0.174 7.174 23 F -0.174 7.174 24 N -0.250 5.250 25 C 0.080 3.920 26 H 0.064 0.936 27 O -0.570 6.570 28 C 0.102 3.898 29 H 0.264 0.736 30 H 0.030 0.970 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.405 0.595 35 H 0.171 0.829 36 H 0.187 0.813 37 H 0.173 0.827 38 H 0.377 0.623 39 H 0.037 0.963 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.158 -10.241 -16.122 25.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.175 4.175 3 Si 0.712 3.288 4 H -0.217 1.217 5 H -0.230 1.230 6 H -0.194 1.194 7 C -0.391 4.391 8 H 0.107 0.893 9 N -0.327 5.327 10 C 0.022 3.978 11 C -0.182 4.182 12 C 0.057 3.943 13 H 0.110 0.890 14 N -0.348 5.348 15 C 0.384 3.616 16 O -0.404 6.404 17 C -0.145 4.145 18 C -0.195 4.195 19 C -0.143 4.143 20 N -0.147 5.147 21 C 0.364 3.636 22 F -0.156 7.156 23 F -0.156 7.156 24 N -0.082 5.082 25 C 0.019 3.981 26 H 0.082 0.918 27 O -0.375 6.375 28 C -0.025 4.025 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.239 0.761 35 H 0.189 0.811 36 H 0.204 0.796 37 H 0.190 0.810 38 H 0.224 0.776 39 H 0.055 0.945 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 16.991 -10.278 -15.989 25.495 hybrid contribution 0.572 0.987 -0.331 1.188 sum 17.563 -9.291 -16.320 25.713 Atomic orbital electron populations 1.69837 1.05715 1.26666 1.52569 1.25305 0.95256 0.97601 0.99384 0.86989 0.80209 0.84617 0.77029 1.21726 1.22950 1.19381 1.18942 0.84740 0.94950 1.40447 0.89339 1.44338 1.08883 1.33388 1.46086 1.20971 0.92459 0.91342 0.93022 1.22445 0.99848 0.97910 0.98025 1.21043 0.94298 0.92119 0.86811 0.88996 1.45914 1.14872 1.56586 1.17400 1.16788 0.81355 0.78304 0.85159 1.90814 1.64140 1.58139 1.27275 1.22316 0.95400 1.04374 0.92396 1.21930 0.97231 1.02480 0.97875 1.22985 0.92715 1.05095 0.93504 1.46507 1.12438 1.43410 1.12313 1.21183 0.93675 0.74549 0.74221 1.93160 1.68746 1.83859 1.69822 1.93159 1.97188 1.30027 1.95187 1.73509 1.19111 1.12235 1.03369 1.22786 0.93511 0.90220 0.91575 0.91823 1.86450 1.39869 1.47550 1.63640 1.22025 0.97785 0.92777 0.89909 0.92656 0.95231 0.91049 0.91398 0.91174 0.76057 0.81147 0.79576 0.81024 0.77582 0.94522 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.01 13.97 55.49 0.78 -26.23 16 2 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 3 Si 0.88 21.77 24.35 -169.99 -4.14 17.63 16 4 H -0.29 -6.76 6.62 56.52 0.37 -6.38 16 5 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 6 H -0.27 -6.63 6.63 56.52 0.37 -6.26 16 7 C -0.26 -7.09 10.04 -15.06 -0.15 -7.24 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 9 N -0.60 -13.81 2.77 -172.33 -0.48 -14.29 16 10 C 0.15 2.88 6.52 -3.71 -0.02 2.86 16 11 C -0.14 -2.39 5.65 -26.61 -0.15 -2.54 16 12 C 0.16 2.72 2.12 -67.89 -0.14 2.57 16 13 H 0.09 1.73 7.58 -51.93 -0.39 1.34 16 14 N -0.70 -10.35 4.92 -54.75 -0.27 -10.62 16 15 C 0.60 9.27 7.79 -12.39 -0.10 9.17 16 16 O -0.53 -9.62 16.59 5.31 0.09 -9.54 16 17 C 0.02 0.25 7.13 -82.76 -0.59 -0.34 16 18 C -0.17 -1.77 10.81 -39.36 -0.43 -2.20 16 19 C 0.00 -0.03 11.33 -17.17 -0.19 -0.22 16 20 N -0.35 -3.13 3.56 -66.62 -0.24 -3.37 16 21 C 0.50 2.84 6.24 59.85 0.37 3.21 16 22 F -0.17 -1.13 17.46 2.25 0.04 -1.09 16 23 F -0.17 -1.12 17.46 2.25 0.04 -1.08 16 24 N -0.25 -2.82 11.67 33.42 0.39 -2.43 16 25 C 0.08 1.39 3.14 -26.61 -0.08 1.31 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 O -0.57 -9.00 13.16 -35.23 -0.46 -9.46 16 28 C 0.10 2.14 3.83 -3.71 -0.01 2.13 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.36 7.93 -51.93 -0.41 0.95 16 32 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.40 5.38 8.33 -40.82 -0.34 5.04 16 35 H 0.17 1.58 8.06 -52.48 -0.42 1.15 16 36 H 0.19 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.17 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.38 4.64 9.08 45.56 0.41 5.05 16 39 H 0.04 0.80 7.08 -51.93 -0.37 0.43 16 40 H 0.08 1.76 4.50 -51.93 -0.23 1.53 16 LS Contribution 343.76 15.07 5.18 5.18 Total: -1.00 -33.83 343.76 -4.57 -38.40 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -3.90 Total: 7.62 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: -1.59 Total: 9.28 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: 0.18 Total: -56.94 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.38 Total: -19.00 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.08 Total: -2.17 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.14 Total: 17.63 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.83 -4.57 -38.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090295866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.662 kcal (2) G-P(sol) polarization free energy of solvation -33.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds