Wall clock time and date at job start Tue Mar 31 2020 05:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00449 * 2 1 4 4 H 1.48493 * 109.47177 * 240.00270 * 3 2 1 5 5 H 1.48501 * 109.47094 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46922 * 119.99963 * 3 2 1 7 7 C 1.38816 * 119.99559 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99622 * 163.08781 * 7 2 1 9 9 N 1.36938 * 119.99905 * 343.09179 * 7 2 1 10 10 C 1.46921 * 120.62973 * 151.83087 * 9 7 2 11 11 C 1.53196 * 108.77780 * 126.36818 * 10 9 7 12 12 C 1.53039 * 109.31373 * 54.63068 * 11 10 9 13 13 H 1.09000 * 109.45909 * 58.64468 * 12 11 10 14 14 N 1.46497 * 109.46086 * 178.61663 * 12 11 10 15 15 C 1.34776 * 120.00062 * 275.03080 * 14 12 11 16 16 O 1.21567 * 120.00309 * 359.97438 * 15 14 12 17 17 C 1.47710 * 119.99607 * 179.97438 * 15 14 12 18 18 C 1.41508 * 126.51648 * 179.97438 * 17 15 14 19 19 C 1.35361 * 105.50481 * 180.02562 * 18 17 15 20 20 N 1.35031 * 107.22967 * 0.02562 * 19 18 17 21 21 C 1.46499 * 124.88607 * 179.73215 * 20 19 18 22 22 F 1.39899 * 109.47319 * 300.00227 * 21 20 19 23 23 F 1.39901 * 109.47014 * 60.00010 * 21 20 19 24 24 N 1.28471 * 110.23210 * 359.97438 * 20 19 18 25 25 C 1.53039 * 109.52624 * 298.62975 * 12 11 10 26 26 H 1.08998 * 109.49744 * 181.31960 * 25 12 11 27 27 O 1.42898 * 109.50096 * 301.42044 * 25 12 11 28 28 C 1.46926 * 120.63111 * 331.80229 * 9 7 2 29 29 H 0.97004 * 119.99339 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.59028 * 6.57534 * 10 9 7 31 31 H 1.09000 * 109.58405 * 246.14989 * 10 9 7 32 32 H 1.09007 * 109.49445 * 294.67906 * 11 10 9 33 33 H 1.08997 * 109.52513 * 174.60513 * 11 10 9 34 34 H 0.97003 * 119.99732 * 95.02521 * 14 12 11 35 35 H 1.08001 * 127.24443 * 359.97438 * 18 17 15 36 36 H 1.08002 * 126.38478 * 179.97438 * 19 18 17 37 37 H 1.08995 * 109.46929 * 179.97438 * 21 20 19 38 38 H 0.96704 * 114.00221 * 180.02562 * 27 25 12 39 39 H 1.08999 * 109.58696 * 353.42004 * 28 9 7 40 40 H 1.09000 * 109.58765 * 113.84900 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2726 9 7 1.3698 -2.3626 0.3439 10 6 1.8137 -3.6527 -0.2013 11 6 2.0678 -4.6179 0.9609 12 6 0.8128 -4.7022 1.8326 13 1 -0.0276 -5.0420 1.2273 14 7 1.0410 -5.6497 2.9264 15 6 0.8370 -6.9674 2.7302 16 8 0.4633 -7.3697 1.6456 17 6 1.0677 -7.9226 3.8329 18 6 0.8975 -9.3264 3.7804 19 6 1.2230 -9.7769 5.0147 20 7 1.5656 -8.7012 5.7555 21 6 1.9809 -8.7486 7.1596 22 9 0.9515 -9.2970 7.9321 23 9 3.1274 -9.5413 7.2803 24 7 1.4703 -7.6295 5.0534 25 6 0.4985 -3.3209 2.4118 26 1 -0.3817 -3.3863 3.0512 27 8 1.6129 -2.8605 3.1787 28 6 0.2262 -2.3412 1.2660 29 1 -0.4849 0.8401 0.0004 30 1 2.7341 -3.5128 -0.7680 31 1 1.0399 -4.0601 -0.8519 32 1 2.9030 -4.2544 1.5598 33 1 2.3051 -5.6066 0.5682 34 1 1.3389 -5.3286 3.7919 35 1 0.5749 -9.9145 2.9339 36 1 1.2101 -10.8049 5.3455 37 1 2.1991 -7.7393 7.5082 38 1 1.4831 -1.9888 3.5769 39 1 0.0992 -1.3358 1.6674 40 1 -0.6771 -2.6416 0.7350 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090295867.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:52 Heat of formation + Delta-G solvation = -66.181477 kcal Electronic energy + Delta-G solvation = -28359.688716 eV Core-core repulsion = 23848.477227 eV Total energy + Delta-G solvation = -4511.211489 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.97259 -48.05830 -42.98178 -39.61020 -37.85293 -34.78201 -34.33734 -33.30383 -32.08526 -31.17660 -29.44186 -29.05556 -27.07112 -25.20736 -23.53846 -22.29244 -21.98245 -21.62480 -20.04916 -19.42884 -19.07375 -18.52097 -18.07517 -17.47736 -17.01553 -16.05208 -15.88824 -15.45663 -15.05220 -14.87559 -14.80840 -14.41633 -14.36125 -14.26768 -14.00853 -13.85852 -13.71010 -13.46765 -13.18699 -12.74047 -12.68384 -12.13369 -11.98663 -11.42044 -11.26215 -11.14891 -10.78994 -10.59759 -10.47198 -10.26744 -10.05868 -9.97088 -9.89586 -9.65268 -9.62752 -9.17843 -8.70556 -8.49142 -6.67393 -5.81238 -3.22137 1.11658 1.28337 1.78506 2.90231 3.23965 3.37312 3.37998 3.43386 3.45163 3.51065 3.97087 4.25795 4.34918 4.48329 4.78688 4.91810 5.23667 5.30890 5.37819 5.43123 5.47742 5.57963 5.90488 5.96486 6.05071 6.07217 6.22449 6.27424 6.47088 6.56450 6.80536 6.83812 6.99058 7.17920 7.27176 7.43586 7.75437 7.79012 8.24672 8.32892 8.43673 9.18373 9.81412 10.38495 11.27621 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.024215 B = 0.002549 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.010328 B =10981.761819 C =11544.972264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.001 4.001 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.284 1.284 7 C -0.243 4.243 8 H 0.065 0.935 9 N -0.583 5.583 10 C 0.148 3.852 11 C -0.137 4.137 12 C 0.161 3.839 13 H 0.093 0.907 14 N -0.701 5.701 15 C 0.596 3.404 16 O -0.530 6.530 17 C 0.019 3.981 18 C -0.168 4.168 19 C -0.004 4.004 20 N -0.350 5.350 21 C 0.497 3.503 22 F -0.175 7.175 23 F -0.174 7.174 24 N -0.249 5.249 25 C 0.073 3.927 26 H 0.044 0.956 27 O -0.559 6.559 28 C 0.146 3.854 29 H 0.254 0.746 30 H 0.058 0.942 31 H 0.021 0.979 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.408 0.592 35 H 0.171 0.829 36 H 0.187 0.813 37 H 0.173 0.827 38 H 0.375 0.625 39 H 0.096 0.904 40 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.777 -17.791 15.792 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.199 4.199 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.373 4.373 8 H 0.083 0.917 9 N -0.305 5.305 10 C 0.022 3.978 11 C -0.177 4.177 12 C 0.058 3.942 13 H 0.111 0.889 14 N -0.351 5.351 15 C 0.379 3.621 16 O -0.405 6.405 17 C -0.145 4.145 18 C -0.195 4.195 19 C -0.144 4.144 20 N -0.147 5.147 21 C 0.364 3.636 22 F -0.156 7.156 23 F -0.156 7.156 24 N -0.082 5.082 25 C 0.012 3.988 26 H 0.062 0.938 27 O -0.364 6.364 28 C 0.019 3.981 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.243 0.757 35 H 0.188 0.812 36 H 0.204 0.796 37 H 0.190 0.810 38 H 0.222 0.778 39 H 0.114 0.886 40 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.002 -17.637 15.649 23.663 hybrid contribution 0.070 0.577 0.284 0.647 sum 2.072 -17.060 15.933 23.434 Atomic orbital electron populations 1.70010 1.05202 1.25600 1.54434 1.25026 0.95293 0.98365 1.01168 0.86350 0.78857 0.83273 0.78181 1.20926 1.21749 1.21056 1.19144 0.92552 0.84683 1.40929 0.91721 1.43869 1.35465 1.01771 1.49394 1.20896 0.97949 0.86368 0.92637 1.22321 0.97494 0.99437 0.98472 1.21101 0.99505 0.86252 0.87341 0.88885 1.46104 1.66884 1.05533 1.16570 1.16858 0.78010 0.81763 0.85448 1.90814 1.47022 1.78262 1.24411 1.22371 1.05315 0.94972 0.91863 1.21935 1.06194 0.93345 0.98074 1.22982 1.04380 0.94601 0.92406 1.46506 1.51742 1.05437 1.11019 1.21178 0.73228 0.94342 0.74883 1.93156 1.60156 1.88511 1.73796 1.93158 1.49645 1.77872 1.94912 1.73530 1.18733 1.11352 1.04576 1.22840 0.87695 0.93972 0.94308 0.93812 1.86354 1.41799 1.38703 1.69592 1.21442 0.89715 0.98309 0.88661 0.93599 0.92392 0.96143 0.91126 0.92759 0.75660 0.81155 0.79604 0.81023 0.77817 0.88626 0.95365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.54 11.20 55.49 0.62 -24.92 16 2 C 0.00 -0.02 4.92 -17.43 -0.09 -0.10 16 3 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.24 -6.55 9.58 -15.06 -0.14 -6.70 16 8 H 0.07 1.74 7.88 -52.49 -0.41 1.32 16 9 N -0.58 -14.29 2.93 -172.32 -0.51 -14.79 16 10 C 0.15 3.20 6.52 -3.71 -0.02 3.18 16 11 C -0.14 -2.61 5.51 -26.61 -0.15 -2.76 16 12 C 0.16 2.89 2.20 -67.89 -0.15 2.74 16 13 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 14 N -0.70 -10.98 5.05 -54.76 -0.28 -11.26 16 15 C 0.60 9.52 7.79 -12.39 -0.10 9.43 16 16 O -0.53 -9.93 16.59 5.31 0.09 -9.84 16 17 C 0.02 0.26 7.13 -82.76 -0.59 -0.33 16 18 C -0.17 -1.83 10.81 -39.36 -0.43 -2.26 16 19 C 0.00 -0.04 11.33 -17.17 -0.19 -0.23 16 20 N -0.35 -3.25 3.56 -66.62 -0.24 -3.49 16 21 C 0.50 2.99 6.24 59.85 0.37 3.36 16 22 F -0.17 -1.16 17.46 2.25 0.04 -1.12 16 23 F -0.17 -1.18 17.46 2.25 0.04 -1.14 16 24 N -0.25 -2.93 11.67 33.42 0.39 -2.54 16 25 C 0.07 1.33 3.38 -26.61 -0.09 1.24 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 O -0.56 -9.90 12.08 -35.23 -0.43 -10.32 16 28 C 0.15 3.29 4.95 -3.71 -0.02 3.27 16 29 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 1.42 7.61 -51.93 -0.40 1.02 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.41 5.94 7.98 -40.82 -0.33 5.61 16 35 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.19 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.17 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.38 5.74 9.09 45.56 0.41 6.16 16 39 H 0.10 2.36 6.06 -51.93 -0.31 2.05 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 348.52 15.07 5.25 5.25 Total: -1.00 -32.53 348.52 -5.57 -38.10 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -3.94 Total: 8.98 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: -1.59 Total: 10.84 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -0.01 Total: -57.00 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.34 Total: -20.16 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.08 Total: -2.26 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.53 -5.57 -38.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090295867.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.080 kcal (2) G-P(sol) polarization free energy of solvation -32.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds