Wall clock time and date at job start Tue Mar 31 2020 05:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99852 * 2 1 4 4 H 1.48505 * 109.47219 * 270.00465 * 3 2 1 5 5 H 1.48502 * 109.47199 * 30.00599 * 3 2 1 6 6 H 1.48500 * 109.47001 * 150.00848 * 3 2 1 7 7 C 1.38809 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99876 * 197.34924 * 7 2 1 9 9 N 1.36939 * 120.00272 * 17.35078 * 7 2 1 10 10 C 1.46922 * 120.63314 * 207.69734 * 9 7 2 11 11 C 1.53190 * 108.76700 * 233.59410 * 10 9 7 12 12 C 1.53048 * 109.31038 * 305.34587 * 11 10 9 13 13 H 1.09005 * 109.46025 * 301.36905 * 12 11 10 14 14 N 1.46507 * 109.45827 * 181.40199 * 12 11 10 15 15 C 1.34769 * 120.00219 * 84.96949 * 14 12 11 16 16 O 1.21572 * 120.00265 * 0.02562 * 15 14 12 17 17 C 1.47709 * 120.00002 * 179.97438 * 15 14 12 18 18 C 1.41500 * 126.52037 * 180.02562 * 17 15 14 19 19 C 1.35370 * 105.50250 * 180.02562 * 18 17 15 20 20 N 1.35030 * 107.23185 * 359.97438 * 19 18 17 21 21 C 1.46496 * 124.88614 * 179.73845 * 20 19 18 22 22 F 1.39899 * 109.47237 * 209.99713 * 21 20 19 23 23 F 1.39896 * 109.46895 * 330.00220 * 21 20 19 24 24 N 1.28475 * 110.22933 * 0.02562 * 20 19 18 25 25 C 1.53038 * 109.52728 * 61.38587 * 12 11 10 26 26 H 1.08996 * 109.49839 * 58.58226 * 25 12 11 27 27 O 1.42899 * 109.49702 * 178.67507 * 25 12 11 28 28 C 1.46933 * 120.62891 * 27.67536 * 9 7 2 29 29 H 0.97002 * 120.00107 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.58848 * 353.37685 * 10 9 7 31 31 H 1.09004 * 109.58459 * 113.65643 * 10 9 7 32 32 H 1.09004 * 109.48969 * 185.40264 * 11 10 9 33 33 H 1.08997 * 109.50849 * 65.30106 * 11 10 9 34 34 H 0.96998 * 119.99312 * 264.97131 * 14 12 11 35 35 H 1.07994 * 127.24921 * 0.02562 * 18 17 15 36 36 H 1.08003 * 126.38076 * 179.97438 * 19 18 17 37 37 H 1.09005 * 109.46936 * 89.99609 * 21 20 19 38 38 H 0.96702 * 114.00045 * 179.97438 * 27 25 12 39 39 H 1.09006 * 109.58258 * 6.62875 * 28 9 7 40 40 H 1.08995 * 109.70318 * 246.27511 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7002 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2784 9 7 1.3724 -2.3609 -0.3547 10 6 1.8192 -3.6547 0.1791 11 6 2.0742 -4.6094 -0.9915 12 6 0.8182 -4.6890 -1.8624 13 1 -0.0207 -5.0356 -1.2590 14 7 1.0471 -5.6270 -2.9644 15 6 0.8462 -6.9466 -2.7788 16 8 0.4745 -7.3588 -1.6972 17 6 1.0764 -7.8922 -3.8900 18 6 0.9091 -9.2966 -3.8489 19 6 1.2341 -9.7361 -5.0874 20 7 1.5737 -8.6536 -5.8196 21 6 1.9981 -8.6897 -7.2213 22 9 2.8801 -7.6324 -7.4689 23 9 2.6409 -9.9044 -7.4827 24 7 1.4770 -7.5880 -5.1084 25 6 0.5004 -3.3036 -2.4297 26 1 1.3490 -2.9458 -3.0128 27 8 -0.6544 -3.3848 -3.2674 28 6 0.2277 -2.3340 -1.2755 29 1 -0.4850 0.8401 0.0004 30 1 2.7400 -3.5177 0.7461 31 1 1.0479 -4.0678 0.8292 32 1 2.3136 -5.6008 -0.6068 33 1 2.9078 -4.2391 -1.5882 34 1 1.3433 -5.2981 -3.8275 35 1 0.5894 -9.8925 -3.0069 36 1 1.2236 -10.7614 -5.4265 37 1 1.1255 -8.5940 -7.8676 38 1 -0.9143 -2.5409 -3.6617 39 1 0.0985 -1.3255 -1.6684 40 1 -0.6758 -2.6391 -0.7476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090295869.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:59 Heat of formation + Delta-G solvation = -66.733971 kcal Electronic energy + Delta-G solvation = -28340.263536 eV Core-core repulsion = 23829.028089 eV Total energy + Delta-G solvation = -4511.235447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.94321 -48.03992 -42.93871 -39.55816 -37.77620 -35.23979 -34.33748 -33.28895 -32.13299 -31.12003 -29.50303 -28.84061 -27.08268 -25.20125 -23.45153 -22.28379 -21.99834 -21.57263 -20.04079 -19.45227 -19.10898 -18.80270 -17.91600 -17.40280 -16.71607 -16.55604 -15.91832 -15.82521 -14.97289 -14.82735 -14.77185 -14.41272 -14.38542 -14.21677 -13.82676 -13.77594 -13.58607 -13.44899 -13.20776 -12.79874 -12.61961 -12.18097 -11.96053 -11.65060 -11.32202 -11.19892 -10.82907 -10.77269 -10.39674 -10.18046 -10.10647 -9.97624 -9.78305 -9.58027 -9.54440 -9.33716 -8.73247 -8.51521 -6.77109 -5.85650 -3.29042 1.14193 1.39014 1.82340 2.88907 3.26267 3.34449 3.41809 3.42645 3.43141 3.44605 3.82719 4.28600 4.41951 4.45610 4.63056 4.91962 5.27358 5.31479 5.40945 5.43486 5.49051 5.63180 5.93543 5.96513 6.02904 6.10619 6.12523 6.24846 6.46281 6.48977 6.72801 6.84347 6.93520 7.14071 7.32636 7.48147 7.73534 7.79473 8.12958 8.36402 8.38799 9.12736 9.75573 10.31741 11.22764 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.021501 B = 0.002628 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.980974 B =10650.462806 C =11187.443981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.140 4.140 12 C 0.161 3.839 13 H 0.091 0.909 14 N -0.698 5.698 15 C 0.599 3.401 16 O -0.532 6.532 17 C 0.014 3.986 18 C -0.168 4.168 19 C -0.006 4.006 20 N -0.354 5.354 21 C 0.505 3.495 22 F -0.166 7.166 23 F -0.175 7.175 24 N -0.247 5.247 25 C 0.072 3.928 26 H 0.052 0.948 27 O -0.572 6.572 28 C 0.149 3.851 29 H 0.255 0.745 30 H 0.061 0.939 31 H 0.025 0.975 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.404 0.596 35 H 0.171 0.829 36 H 0.190 0.810 37 H 0.164 0.836 38 H 0.376 0.624 39 H 0.094 0.906 40 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.882 -18.674 -16.252 24.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.180 4.180 12 C 0.058 3.942 13 H 0.109 0.891 14 N -0.347 5.347 15 C 0.382 3.618 16 O -0.407 6.407 17 C -0.150 4.150 18 C -0.195 4.195 19 C -0.146 4.146 20 N -0.152 5.152 21 C 0.372 3.628 22 F -0.147 7.147 23 F -0.157 7.157 24 N -0.080 5.080 25 C 0.011 3.989 26 H 0.070 0.930 27 O -0.377 6.377 28 C 0.021 3.979 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.238 0.762 35 H 0.189 0.811 36 H 0.207 0.793 37 H 0.181 0.819 38 H 0.223 0.777 39 H 0.112 0.888 40 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.927 -18.548 -16.122 24.651 hybrid contribution 0.527 0.842 -0.252 1.025 sum 2.454 -17.706 -16.374 24.242 Atomic orbital electron populations 1.70032 1.05249 1.25674 1.53658 1.25075 0.95325 0.98545 1.00715 0.86260 0.79164 0.83480 0.77699 1.21422 1.21714 1.20347 1.19224 0.92872 0.84660 1.41674 0.91316 1.44019 1.35624 1.01811 1.49876 1.20940 0.98295 0.86261 0.92658 1.22434 0.96623 1.00362 0.98623 1.21077 0.98828 0.87029 0.87275 0.89140 1.45988 1.66994 1.05673 1.16034 1.16812 0.77818 0.81710 0.85457 1.90807 1.47049 1.77897 1.24909 1.22381 1.05823 0.94887 0.91883 1.21935 1.06288 0.93461 0.97825 1.22862 1.05511 0.94037 0.92147 1.46735 1.51010 1.05799 1.11636 1.21491 0.88698 0.72223 0.80377 1.93169 1.71544 1.56837 1.93159 1.93145 1.84218 1.45542 1.92784 1.73619 1.18393 1.11867 1.04082 1.22974 0.87151 0.95288 0.93440 0.92971 1.86418 1.48247 1.36589 1.66436 1.21417 0.89821 0.98242 0.88379 0.93494 0.92071 0.95716 0.91674 0.91908 0.76176 0.81141 0.79331 0.81926 0.77746 0.88790 0.95160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.55 11.19 55.49 0.62 -24.93 16 2 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.25 -6.83 9.59 -15.06 -0.14 -6.97 16 8 H 0.07 1.81 7.89 -52.49 -0.41 1.40 16 9 N -0.59 -14.49 2.99 -172.32 -0.52 -15.01 16 10 C 0.15 3.08 6.52 -3.71 -0.02 3.06 16 11 C -0.14 -2.59 5.65 -26.61 -0.15 -2.74 16 12 C 0.16 3.01 2.12 -67.88 -0.14 2.86 16 13 H 0.09 1.89 7.58 -51.93 -0.39 1.50 16 14 N -0.70 -11.49 4.91 -54.74 -0.27 -11.76 16 15 C 0.60 10.04 7.79 -12.39 -0.10 9.95 16 16 O -0.53 -10.36 16.59 5.30 0.09 -10.27 16 17 C 0.01 0.20 7.13 -82.76 -0.59 -0.39 16 18 C -0.17 -1.83 10.81 -39.36 -0.43 -2.26 16 19 C -0.01 -0.05 10.98 -17.17 -0.19 -0.24 16 20 N -0.35 -3.29 3.68 -66.62 -0.24 -3.54 16 21 C 0.50 2.96 6.56 59.84 0.39 3.35 16 22 F -0.17 -1.42 17.25 2.25 0.04 -1.38 16 23 F -0.18 -1.02 16.96 2.25 0.04 -0.98 16 24 N -0.25 -3.11 11.41 33.42 0.38 -2.73 16 25 C 0.07 1.38 3.14 -26.61 -0.08 1.30 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 27 O -0.57 -10.02 13.16 -35.23 -0.46 -10.48 16 28 C 0.15 3.45 4.94 -3.71 -0.02 3.43 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.40 6.12 8.33 -40.82 -0.34 5.78 16 35 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.19 0.77 8.06 -52.48 -0.42 0.34 16 37 H 0.16 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.38 5.27 9.08 45.56 0.41 5.68 16 39 H 0.09 2.38 6.04 -51.93 -0.31 2.06 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 349.29 15.07 5.26 5.26 Total: -1.00 -33.76 349.29 -5.63 -39.39 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -3.98 Total: 8.93 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: -1.56 Total: 11.32 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -0.03 Total: -57.96 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.38 Total: -20.76 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.08 Total: -2.37 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.76 -5.63 -39.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090295869.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.345 kcal (2) G-P(sol) polarization free energy of solvation -33.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds