Wall clock time and date at job start Tue Mar 31 2020 05:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99752 * 2 1 4 4 H 1.48501 * 109.46745 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47038 * 299.99743 * 3 2 1 6 6 H 1.48490 * 109.47210 * 60.00520 * 3 2 1 7 7 C 1.38814 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00294 * 190.74923 * 7 2 1 9 9 N 1.36935 * 119.99743 * 10.74186 * 7 2 1 10 10 C 1.46932 * 120.62808 * 30.04324 * 9 7 2 11 11 C 1.53199 * 108.77031 * 126.38994 * 10 9 7 12 12 C 1.53039 * 109.31497 * 54.63503 * 11 10 9 13 13 H 1.09000 * 109.46017 * 58.65608 * 12 11 10 14 14 N 1.46504 * 109.45723 * 178.61161 * 12 11 10 15 15 C 1.34778 * 120.00042 * 274.99534 * 14 12 11 16 16 O 1.21631 * 119.99825 * 4.98707 * 15 14 12 17 17 C 1.47160 * 120.00128 * 184.98289 * 15 14 12 18 18 C 1.38405 * 126.88220 * 354.81825 * 17 15 14 19 19 C 1.39677 * 105.35891 * 179.91767 * 18 17 15 20 20 N 1.30860 * 107.85764 * 0.35254 * 19 18 17 21 21 N 1.28444 * 110.93076 * 359.77662 * 20 19 18 22 22 C 1.46497 * 125.18864 * 180.02562 * 21 20 19 23 23 F 1.39901 * 109.47253 * 16.47178 * 22 21 20 24 24 F 1.39905 * 109.47059 * 136.47179 * 22 21 20 25 25 C 1.53038 * 109.53628 * 298.63428 * 12 11 10 26 26 H 1.08999 * 109.49574 * 301.41052 * 25 12 11 27 27 O 1.42904 * 109.49650 * 181.31748 * 25 12 11 28 28 C 1.46925 * 120.63382 * 210.04098 * 9 7 2 29 29 H 0.97003 * 120.00009 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.58732 * 6.60401 * 10 9 7 31 31 H 1.08995 * 109.58755 * 246.16992 * 10 9 7 32 32 H 1.09008 * 109.49307 * 174.58969 * 11 10 9 33 33 H 1.08997 * 109.49666 * 294.64418 * 11 10 9 34 34 H 0.97000 * 119.99690 * 95.00738 * 14 12 11 35 35 H 1.08002 * 127.31892 * 0.02562 * 18 17 15 36 36 H 1.08003 * 126.06570 * 180.15100 * 19 18 17 37 37 H 1.08997 * 109.47412 * 256.47480 * 22 21 20 38 38 H 0.96694 * 114.00156 * 179.97438 * 27 25 12 39 39 H 1.08997 * 109.58730 * 113.82304 * 28 9 7 40 40 H 1.09006 * 109.69971 * 353.46844 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0760 -1.2104 0.1739 9 7 1.3437 -2.3775 -0.2221 10 6 0.1418 -2.4087 -1.0668 11 6 0.3335 -3.4670 -2.1578 12 6 0.6792 -4.8082 -1.5069 13 1 -0.1210 -5.0985 -0.8261 14 7 0.8306 -5.8302 -2.5456 15 6 -0.2525 -6.4826 -3.0121 16 8 -1.3642 -6.1610 -2.6376 17 6 -0.0903 -7.5841 -3.9744 18 6 1.0880 -8.0009 -4.5689 19 6 0.7286 -9.0695 -5.3935 20 7 -0.5636 -9.2444 -5.2832 21 7 -1.0733 -8.3960 -4.4645 22 6 -2.4922 -8.3126 -4.1099 23 9 -3.1371 -9.4960 -4.4853 24 9 -2.6178 -8.1311 -2.7283 25 6 1.9893 -4.6759 -0.7269 26 1 2.7848 -4.3617 -1.4026 27 8 2.3272 -5.9365 -0.1448 28 6 1.8165 -3.6314 0.3803 29 1 -0.4850 0.8401 0.0004 30 1 -0.0066 -1.4320 -1.5273 31 1 -0.7258 -2.6641 -0.4586 32 1 -0.5874 -3.5681 -2.7324 33 1 1.1441 -3.1639 -2.8204 34 1 1.7105 -6.0374 -2.8975 35 1 2.0758 -7.5887 -4.4245 36 1 1.3978 -9.6466 -6.0144 37 1 -2.9478 -7.4699 -4.6299 38 1 3.1486 -5.9267 0.3652 39 1 1.0854 -3.9864 1.1066 40 1 2.7724 -3.4632 0.8763 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090295990.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:03 Heat of formation + Delta-G solvation = -66.171784 kcal Electronic energy + Delta-G solvation = -29004.313785 eV Core-core repulsion = 24493.102716 eV Total energy + Delta-G solvation = -4511.211069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.47692 -47.56268 -42.78077 -39.71655 -37.94458 -35.46397 -34.58037 -33.03269 -32.23270 -31.22477 -29.83909 -28.55459 -26.54821 -25.38899 -23.51962 -22.43621 -22.17691 -21.42688 -20.48421 -19.79077 -18.69230 -18.38466 -17.46701 -17.19352 -16.74123 -16.59109 -15.96791 -15.75521 -15.09695 -14.83850 -14.63243 -14.44240 -14.27919 -13.96266 -13.88664 -13.81829 -13.53550 -13.29552 -13.21762 -12.83773 -12.43761 -12.35293 -12.14470 -11.60769 -11.22020 -11.12630 -10.96753 -10.75402 -10.39359 -10.29446 -10.18303 -10.00033 -9.81887 -9.78919 -9.55137 -9.47887 -8.88491 -8.53379 -6.78940 -5.88577 -3.37943 0.88867 1.50112 2.25683 2.96946 3.13694 3.30538 3.32864 3.38047 3.39907 3.76285 4.22826 4.27865 4.39258 4.50272 4.65382 4.79652 5.18392 5.20951 5.30095 5.36906 5.41516 5.46462 5.69941 5.88874 5.98658 6.03125 6.12759 6.19013 6.41537 6.43670 6.60862 6.70556 6.73209 7.25898 7.43039 7.59798 7.61552 7.68357 7.85339 8.13620 8.35205 9.09542 9.70004 10.26154 11.19243 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.022149 B = 0.002908 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.838619 B = 9626.960343 C =10052.985822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.006 3.994 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.259 4.259 8 H 0.067 0.933 9 N -0.589 5.589 10 C 0.170 3.830 11 C -0.147 4.147 12 C 0.165 3.835 13 H 0.090 0.910 14 N -0.695 5.695 15 C 0.581 3.419 16 O -0.529 6.529 17 C -0.010 4.010 18 C -0.178 4.178 19 C 0.016 3.984 20 N -0.267 5.267 21 N -0.330 5.330 22 C 0.506 3.494 23 F -0.171 7.171 24 F -0.155 7.155 25 C 0.080 3.920 26 H 0.058 0.942 27 O -0.571 6.571 28 C 0.121 3.879 29 H 0.256 0.744 30 H 0.098 0.902 31 H 0.024 0.976 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.399 0.601 35 H 0.168 0.832 36 H 0.194 0.806 37 H 0.161 0.839 38 H 0.375 0.625 39 H 0.030 0.970 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.265 -15.854 -10.012 18.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.193 4.193 3 Si 0.737 3.263 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.388 4.388 8 H 0.085 0.915 9 N -0.313 5.313 10 C 0.044 3.956 11 C -0.188 4.188 12 C 0.062 3.938 13 H 0.108 0.892 14 N -0.344 5.344 15 C 0.364 3.636 16 O -0.406 6.406 17 C -0.136 4.136 18 C -0.206 4.206 19 C -0.163 4.163 20 N -0.096 5.096 21 N -0.127 5.127 22 C 0.374 3.626 23 F -0.152 7.152 24 F -0.136 7.136 25 C 0.019 3.981 26 H 0.076 0.924 27 O -0.376 6.376 28 C -0.007 4.007 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.234 0.766 35 H 0.186 0.814 36 H 0.211 0.789 37 H 0.177 0.823 38 H 0.222 0.778 39 H 0.047 0.953 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.317 -16.309 -10.281 19.282 hybrid contribution 2.030 1.215 0.478 2.414 sum 1.713 -15.094 -9.803 18.079 Atomic orbital electron populations 1.69974 1.05280 1.25629 1.53657 1.25171 0.95446 0.98525 1.00188 0.86157 0.79188 0.83623 0.77375 1.20219 1.21468 1.21554 1.19209 0.90936 0.83715 1.44961 0.91522 1.44034 1.30541 1.02808 1.53880 1.20896 0.87911 0.97420 0.89339 1.22643 1.01002 0.94501 1.00634 1.21131 0.97609 0.87389 0.87656 0.89159 1.45779 1.08844 1.39256 1.40554 1.16858 0.85557 0.80812 0.80352 1.90887 1.24148 1.66556 1.58992 1.21686 0.88958 0.99220 1.03728 1.22412 0.97919 0.99747 1.00571 1.23768 0.90976 0.99271 1.02266 1.73254 1.12538 1.13112 1.10721 1.47004 1.08486 1.24430 1.32828 1.21441 0.75490 0.86477 0.79167 1.93120 1.79967 1.50956 1.91192 1.93245 1.94379 1.95205 1.30756 1.22788 0.95367 0.84146 0.95826 0.92432 1.86484 1.46419 1.32747 1.71927 1.21531 0.98918 0.87383 0.92871 0.93415 0.88350 0.95799 0.91765 0.92247 0.76630 0.81406 0.78890 0.82275 0.77848 0.95252 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.26 10.95 55.49 0.61 -24.65 16 2 C 0.01 0.15 5.06 -17.43 -0.09 0.07 16 3 Si 0.91 20.79 29.57 -169.99 -5.03 15.77 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.26 -6.70 9.60 -15.06 -0.14 -6.85 16 8 H 0.07 1.68 7.85 -52.49 -0.41 1.27 16 9 N -0.59 -13.89 2.99 -172.32 -0.52 -14.40 16 10 C 0.17 3.93 5.27 -3.70 -0.02 3.91 16 11 C -0.15 -2.74 5.65 -26.61 -0.15 -2.89 16 12 C 0.17 2.80 2.08 -67.89 -0.14 2.66 16 13 H 0.09 1.78 7.65 -51.93 -0.40 1.38 16 14 N -0.69 -9.72 4.91 -54.92 -0.27 -9.99 16 15 C 0.58 8.73 7.64 -12.64 -0.10 8.63 16 16 O -0.53 -9.49 13.55 5.25 0.07 -9.42 16 17 C -0.01 -0.12 6.83 -82.06 -0.56 -0.69 16 18 C -0.18 -1.72 10.50 -38.98 -0.41 -2.13 16 19 C 0.02 0.15 12.03 -17.43 -0.21 -0.06 16 20 N -0.27 -3.25 11.54 30.59 0.35 -2.90 16 21 N -0.33 -4.23 3.72 -62.39 -0.23 -4.46 16 22 C 0.51 5.92 5.96 59.85 0.36 6.28 16 23 F -0.17 -2.01 17.13 2.25 0.04 -1.97 16 24 F -0.15 -2.24 14.68 2.25 0.03 -2.21 16 25 C 0.08 1.27 3.14 -26.62 -0.08 1.18 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 O -0.57 -7.99 13.16 -35.23 -0.46 -8.46 16 28 C 0.12 2.34 6.14 -3.71 -0.02 2.32 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.10 2.54 5.99 -51.93 -0.31 2.23 16 31 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.19 8.09 -51.92 -0.42 0.77 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.40 4.47 7.63 -40.82 -0.31 4.16 16 35 H 0.17 1.10 7.58 -52.49 -0.40 0.70 16 36 H 0.19 1.06 8.06 -52.48 -0.42 0.63 16 37 H 0.16 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.37 3.68 9.08 45.56 0.41 4.09 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 1.12 7.94 -51.93 -0.41 0.70 16 LS Contribution 342.33 15.07 5.16 5.16 Total: -1.00 -32.77 342.33 -5.74 -38.50 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -3.92 Total: 6.58 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: -1.57 Total: 12.43 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.06 Total: -56.39 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.39 Total: -17.87 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.07 Total: -4.18 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.77 -5.74 -38.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090295990.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.670 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds