Wall clock time and date at job start Tue Mar 31 2020 05:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86808 * 120.00020 * 2 1 4 4 H 1.48498 * 109.46842 * 270.00302 * 3 2 1 5 5 H 1.48503 * 109.46751 * 29.99914 * 3 2 1 6 6 H 1.48494 * 109.47075 * 150.00070 * 3 2 1 7 7 C 1.38810 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99712 * 163.61907 * 7 2 1 9 9 N 1.36934 * 120.00170 * 343.62640 * 7 2 1 10 10 C 1.46926 * 120.62818 * 330.58431 * 9 7 2 11 11 C 1.53185 * 108.77705 * 233.58913 * 10 9 7 12 12 C 1.53038 * 109.31690 * 305.36553 * 11 10 9 13 13 H 1.08993 * 109.46342 * 181.38494 * 12 11 10 14 14 N 1.46507 * 109.45991 * 301.36251 * 12 11 10 15 15 C 1.34771 * 119.99437 * 274.99515 * 14 12 11 16 16 O 1.21624 * 120.00514 * 5.34641 * 15 14 12 17 17 C 1.47171 * 119.99677 * 185.34597 * 15 14 12 18 18 C 1.38396 * 126.88226 * 355.60080 * 17 15 14 19 19 C 1.39680 * 105.35883 * 180.02562 * 18 17 15 20 20 N 1.30860 * 107.85915 * 0.02562 * 19 18 17 21 21 N 1.28447 * 110.92754 * 359.71113 * 20 19 18 22 22 C 1.46504 * 125.19169 * 180.27508 * 21 20 19 23 23 F 1.39906 * 109.46459 * 14.61876 * 22 21 20 24 24 F 1.39895 * 109.46930 * 134.61386 * 22 21 20 25 25 C 1.53360 * 109.60514 * 61.37292 * 12 11 10 26 26 H 1.08994 * 109.46889 * 58.54840 * 25 12 11 27 27 O 1.42893 * 109.68246 * 178.74973 * 25 12 11 28 28 C 1.46923 * 120.63409 * 150.56880 * 9 7 2 29 29 H 0.96997 * 119.99863 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.58979 * 353.37942 * 10 9 7 31 31 H 1.09006 * 109.58478 * 113.65618 * 10 9 7 32 32 H 1.09001 * 109.49891 * 65.31849 * 11 10 9 33 33 H 1.09001 * 109.49765 * 185.41671 * 11 10 9 34 34 H 0.97000 * 119.99860 * 94.99239 * 14 12 11 35 35 H 1.08006 * 127.32236 * 359.97438 * 18 17 15 36 36 H 1.07996 * 126.06783 * 179.97438 * 19 18 17 37 37 H 1.08993 * 109.47433 * 254.62123 * 22 21 20 38 38 H 0.96702 * 114.00114 * 179.75137 * 27 25 12 39 39 H 1.08994 * 109.58583 * 246.20222 * 28 9 7 40 40 H 1.09008 * 109.58487 * 6.48012 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0574 -1.2212 -0.2632 9 7 1.3673 -2.3638 0.3354 10 6 0.2330 -2.3492 1.2691 11 6 0.5107 -3.3469 2.3979 12 6 0.8116 -4.7214 1.7961 13 1 0.9854 -5.4388 2.5980 14 7 -0.3283 -5.1602 0.9871 15 6 -1.3680 -5.7872 1.5720 16 8 -1.4060 -5.9025 2.7822 17 6 -2.4575 -6.3323 0.7464 18 6 -2.6023 -6.2091 -0.6245 19 6 -3.7823 -6.8893 -0.9345 20 7 -4.2754 -7.3658 0.1800 21 7 -3.5261 -7.0650 1.1789 22 6 -3.7808 -7.4461 2.5704 23 9 -4.7563 -8.4482 2.6082 24 9 -2.5990 -7.9238 3.1468 25 6 2.0611 -4.6333 0.9111 26 1 2.9040 -4.2828 1.5066 27 8 2.3605 -5.9221 0.3715 28 6 1.7983 -3.6485 -0.2325 29 1 -0.4850 0.8400 -0.0004 30 1 0.1157 -1.3490 1.6860 31 1 -0.6776 -2.6344 0.7422 32 1 1.3683 -3.0087 2.9795 33 1 -0.3637 -3.4167 3.0450 34 1 -0.3346 -4.9994 0.0305 35 1 -1.9435 -5.6954 -1.3090 36 1 -4.2117 -7.0012 -1.9190 37 1 -4.1310 -6.5769 3.1270 38 1 3.1389 -5.9372 -0.2021 39 1 1.0159 -4.0421 -0.8812 40 1 2.7127 -3.5050 -0.8084 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090295991.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:06 Heat of formation + Delta-G solvation = -64.485200 kcal Electronic energy + Delta-G solvation = -29517.759750 eV Core-core repulsion = 25006.621817 eV Total energy + Delta-G solvation = -4511.137933 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.41640 -47.50426 -42.63945 -39.79634 -37.89408 -35.50976 -34.28946 -32.91719 -32.09649 -31.08652 -29.92576 -28.61788 -26.42931 -25.45927 -23.59094 -22.38187 -22.11024 -21.65505 -20.64024 -18.91583 -18.82161 -18.30323 -17.39977 -17.14909 -16.80645 -16.53346 -15.73077 -15.48592 -14.99413 -14.79064 -14.55509 -14.43361 -14.33652 -14.21451 -13.84677 -13.75468 -13.43833 -13.32481 -13.19667 -12.78270 -12.39475 -12.35981 -12.09374 -11.74318 -11.24920 -11.07358 -10.93029 -10.77025 -10.46018 -10.30644 -10.07135 -10.00912 -9.83733 -9.65279 -9.50817 -9.33425 -8.76837 -8.58354 -6.82502 -5.93333 -3.39203 1.02453 1.61697 2.40498 3.11451 3.24363 3.29009 3.37129 3.38470 3.39885 3.86335 4.28178 4.31173 4.42718 4.58489 4.79706 4.93872 5.20866 5.22797 5.34351 5.38208 5.48564 5.56195 5.61568 5.85539 5.95610 6.13286 6.14404 6.28053 6.36671 6.43445 6.56275 6.59233 6.76613 7.18620 7.50544 7.56389 7.66043 7.74070 7.84595 8.24302 8.30018 9.05082 9.66883 10.22622 11.14913 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.018165 B = 0.003399 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.049698 B = 8234.688894 C = 8599.781847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.009 3.991 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.262 4.262 8 H 0.066 0.934 9 N -0.586 5.586 10 C 0.172 3.828 11 C -0.154 4.154 12 C 0.169 3.831 13 H 0.082 0.918 14 N -0.683 5.683 15 C 0.584 3.416 16 O -0.540 6.540 17 C -0.011 4.011 18 C -0.172 4.172 19 C 0.018 3.982 20 N -0.268 5.268 21 N -0.332 5.332 22 C 0.508 3.492 23 F -0.172 7.172 24 F -0.158 7.158 25 C 0.075 3.925 26 H 0.069 0.931 27 O -0.571 6.571 28 C 0.118 3.882 29 H 0.256 0.744 30 H 0.088 0.912 31 H 0.022 0.978 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.406 0.594 35 H 0.170 0.830 36 H 0.195 0.805 37 H 0.160 0.840 38 H 0.375 0.625 39 H 0.022 0.978 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.136 -12.576 0.724 13.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.191 4.191 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.392 4.392 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.046 3.954 11 C -0.194 4.194 12 C 0.065 3.935 13 H 0.100 0.900 14 N -0.334 5.334 15 C 0.368 3.632 16 O -0.418 6.418 17 C -0.137 4.137 18 C -0.201 4.201 19 C -0.162 4.162 20 N -0.097 5.097 21 N -0.129 5.129 22 C 0.376 3.624 23 F -0.153 7.153 24 F -0.139 7.139 25 C 0.014 3.986 26 H 0.087 0.913 27 O -0.375 6.375 28 C -0.010 4.010 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.040 0.960 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.243 0.757 35 H 0.187 0.813 36 H 0.211 0.789 37 H 0.177 0.823 38 H 0.222 0.778 39 H 0.040 0.960 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.681 -13.381 2.592 14.766 hybrid contribution 1.539 1.455 -1.232 2.450 sum -4.142 -11.925 1.360 12.697 Atomic orbital electron populations 1.70019 1.05327 1.25813 1.52991 1.25086 0.95279 0.98536 1.00155 0.86299 0.79213 0.83449 0.77788 1.21282 1.21468 1.20374 1.19124 0.92336 0.84487 1.43215 0.91645 1.43980 1.36762 1.01350 1.48903 1.20775 0.88720 0.97994 0.87863 1.22604 1.01799 0.94622 1.00355 1.20992 0.82927 0.96983 0.92611 0.90038 1.45606 1.18287 1.57039 1.12492 1.16801 0.81214 0.78511 0.86638 1.90830 1.78317 1.59388 1.13280 1.21603 0.93533 1.03756 0.94766 1.22474 1.00220 1.04548 0.92844 1.23768 0.95448 0.99878 0.97076 1.73240 1.20204 1.21501 0.94767 1.46925 1.18032 1.39888 1.08044 1.21402 0.75011 0.88421 0.77596 1.93115 1.62285 1.64307 1.95581 1.93215 1.48367 1.89732 1.82630 1.22802 0.96106 0.83302 0.96388 0.91289 1.86475 1.51610 1.30873 1.68562 1.21547 0.98633 0.87717 0.93095 0.93442 0.89405 0.95971 0.91220 0.91610 0.75745 0.81297 0.78860 0.82335 0.77806 0.96036 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.55 11.26 55.49 0.62 -23.92 16 2 C 0.01 0.23 4.92 -17.43 -0.09 0.15 16 3 Si 0.90 20.51 29.58 -169.99 -5.03 15.48 16 4 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.26 -6.63 9.57 -15.06 -0.14 -6.77 16 8 H 0.07 1.62 7.88 -52.49 -0.41 1.21 16 9 N -0.59 -13.15 2.99 -172.33 -0.51 -13.66 16 10 C 0.17 3.77 5.03 -3.71 -0.02 3.75 16 11 C -0.15 -2.81 5.77 -26.62 -0.15 -2.96 16 12 C 0.17 2.82 2.44 -67.72 -0.17 2.66 16 13 H 0.08 1.41 7.66 -51.93 -0.40 1.02 16 14 N -0.68 -10.81 4.15 -54.76 -0.23 -11.04 16 15 C 0.58 9.51 7.65 -12.64 -0.10 9.41 16 16 O -0.54 -9.77 13.65 5.26 0.07 -9.70 16 17 C -0.01 -0.16 6.84 -82.06 -0.56 -0.72 16 18 C -0.17 -2.10 10.50 -38.98 -0.41 -2.51 16 19 C 0.02 0.20 12.03 -17.43 -0.21 -0.01 16 20 N -0.27 -3.65 11.53 30.59 0.35 -3.30 16 21 N -0.33 -4.66 3.72 -62.39 -0.23 -4.90 16 22 C 0.51 6.30 5.89 59.85 0.35 6.66 16 23 F -0.17 -2.11 17.12 2.25 0.04 -2.08 16 24 F -0.16 -2.31 14.88 2.25 0.03 -2.28 16 25 C 0.07 1.18 3.38 -26.45 -0.09 1.09 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 O -0.57 -7.93 13.23 -35.23 -0.47 -8.39 16 28 C 0.12 2.12 5.83 -3.71 -0.02 2.09 16 29 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.09 2.21 6.14 -51.93 -0.32 1.89 16 31 H 0.02 0.51 7.74 -51.93 -0.40 0.11 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 34 H 0.41 6.10 5.89 -40.82 -0.24 5.86 16 35 H 0.17 1.70 7.58 -52.48 -0.40 1.30 16 36 H 0.19 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.16 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.38 3.64 9.08 45.56 0.41 4.06 16 39 H 0.02 0.39 6.64 -51.93 -0.34 0.04 16 40 H 0.06 1.05 7.93 -51.92 -0.41 0.64 16 LS Contribution 338.72 15.07 5.10 5.10 Total: -1.00 -31.44 338.72 -5.61 -37.05 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -3.76 Total: 8.80 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: -1.60 Total: 12.83 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.00 Total: -56.81 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.39 Total: -18.09 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.07 Total: -4.35 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.44 -5.61 -37.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090295991.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.440 kcal (2) G-P(sol) polarization free energy of solvation -31.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds