Wall clock time and date at job start Tue Mar 31 2020 05:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48504 * 109.47115 * 269.99738 * 3 2 1 5 5 H 1.48500 * 109.47480 * 29.99939 * 3 2 1 6 6 H 1.48499 * 109.47007 * 149.99970 * 3 2 1 7 7 C 1.38815 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99487 * 163.17858 * 7 2 1 9 9 N 1.36930 * 119.99653 * 343.18307 * 7 2 1 10 10 C 1.46930 * 120.63022 * 151.86794 * 9 7 2 11 11 C 1.53190 * 108.78004 * 126.11089 * 10 9 7 12 12 C 1.53041 * 109.31007 * 54.63565 * 11 10 9 13 13 H 1.09000 * 109.45950 * 178.61420 * 12 11 10 14 14 N 1.46501 * 109.46021 * 58.64227 * 12 11 10 15 15 C 1.34778 * 119.99872 * 84.99761 * 14 12 11 16 16 O 1.21632 * 119.99891 * 0.02562 * 15 14 12 17 17 C 1.47167 * 119.99956 * 179.97438 * 15 14 12 18 18 C 1.38404 * 126.88173 * 180.02562 * 17 15 14 19 19 C 1.39674 * 105.35759 * 180.02562 * 18 17 15 20 20 N 1.30870 * 107.86143 * 0.02562 * 19 18 17 21 21 N 1.28446 * 110.92551 * 359.71167 * 20 19 18 22 22 C 1.46497 * 125.18934 * 180.28183 * 21 20 19 23 23 F 1.39907 * 109.46993 * 120.20822 * 22 21 20 24 24 F 1.39897 * 109.47332 * 240.20977 * 22 21 20 25 25 C 1.53040 * 109.54016 * 298.63506 * 12 11 10 26 26 H 1.08998 * 109.49957 * 301.38253 * 25 12 11 27 27 O 1.42903 * 109.49907 * 181.31360 * 25 12 11 28 28 C 1.46924 * 120.63656 * 331.58373 * 9 7 2 29 29 H 0.97002 * 120.00123 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.58909 * 245.90295 * 10 9 7 31 31 H 1.09002 * 109.58437 * 6.18367 * 10 9 7 32 32 H 1.08994 * 109.50234 * 174.58829 * 11 10 9 33 33 H 1.09003 * 109.49722 * 294.65532 * 11 10 9 34 34 H 0.97000 * 120.00338 * 265.00323 * 14 12 11 35 35 H 1.08001 * 127.32362 * 0.02585 * 18 17 15 36 36 H 1.08003 * 126.07061 * 179.97438 * 19 18 17 37 37 H 1.08994 * 109.47239 * 0.21282 * 22 21 20 38 38 H 0.96697 * 113.99574 * 180.02562 * 27 25 12 39 39 H 1.09002 * 109.58161 * 353.67314 * 28 9 7 40 40 H 1.09004 * 109.59038 * 114.09689 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0556 -1.2222 -0.2701 9 7 1.3695 -2.3625 0.3442 10 6 1.8147 -3.6528 -0.1996 11 6 2.0730 -4.6155 0.9637 12 6 0.8197 -4.7006 1.8380 13 1 0.9924 -5.4038 2.6527 14 7 -0.3105 -5.1607 1.0274 15 6 -0.5105 -6.4800 0.8372 16 8 0.2471 -7.2885 1.3390 17 6 -1.6462 -6.9422 0.0234 18 6 -1.9840 -8.2537 -0.2624 19 6 -3.1267 -8.1755 -1.0618 20 7 -3.4195 -6.9099 -1.2209 21 7 -2.5808 -6.1631 -0.5975 22 6 -2.6186 -4.6991 -0.5610 23 9 -2.7447 -4.2688 0.7643 24 9 -1.4360 -4.1883 -1.1066 25 6 0.5036 -3.3190 2.4154 26 1 1.3537 -2.9653 2.9987 27 8 -0.6488 -3.4056 3.2560 28 6 0.2276 -2.3417 1.2684 29 1 -0.4850 0.8401 -0.0004 30 1 1.0404 -4.0628 -0.8481 31 1 2.7325 -3.5116 -0.7704 32 1 2.3110 -5.6043 0.5718 33 1 2.9089 -4.2496 1.5600 34 1 -0.9149 -4.5160 0.6274 35 1 -1.4727 -9.1474 0.0633 36 1 -3.6715 -9.0111 -1.4758 37 1 -3.4698 -4.3431 -1.1411 38 1 -0.9075 -2.5644 3.6565 39 1 0.0995 -1.3358 1.6683 40 1 -0.6762 -2.6447 0.7396 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090295992.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:10 Heat of formation + Delta-G solvation = -51.167306 kcal Electronic energy + Delta-G solvation = -31049.185936 eV Core-core repulsion = 26538.625510 eV Total energy + Delta-G solvation = -4510.560426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.87764 -47.66535 -42.66452 -39.72494 -37.80773 -35.30769 -34.24730 -33.06455 -32.09631 -31.05247 -29.54446 -28.86883 -26.52206 -25.44158 -23.57684 -22.28515 -22.15738 -21.76704 -20.67248 -19.15151 -19.00170 -18.09751 -17.46960 -17.01636 -16.68525 -16.50644 -15.75497 -15.53305 -14.98917 -14.86777 -14.49723 -14.36804 -14.20738 -14.08630 -13.96228 -13.74664 -13.58001 -13.41511 -13.17465 -12.76485 -12.32810 -12.26410 -11.84185 -11.69731 -11.26129 -11.08437 -11.03638 -10.84582 -10.47413 -10.26120 -10.02281 -10.00168 -9.81005 -9.61816 -9.36477 -9.35059 -8.76532 -8.57649 -6.79613 -5.91486 -3.34779 0.98275 1.50475 2.35300 3.16338 3.25661 3.29836 3.33812 3.37700 3.39962 3.76365 4.29437 4.37354 4.47282 4.59838 4.64787 4.98756 5.22756 5.28448 5.37473 5.41642 5.62086 5.64964 5.79767 5.89754 6.00241 6.09790 6.18611 6.23862 6.38087 6.40911 6.67325 6.74664 6.86439 7.02512 7.36364 7.53551 7.68583 7.73378 8.07554 8.26204 8.32227 9.07083 9.69868 10.26391 11.16890 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.018250 B = 0.004641 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.901704 B = 6031.786131 C = 6529.697482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.004 3.996 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.068 0.932 9 N -0.585 5.585 10 C 0.143 3.857 11 C -0.146 4.146 12 C 0.164 3.836 13 H 0.082 0.918 14 N -0.702 5.702 15 C 0.580 3.420 16 O -0.530 6.530 17 C -0.016 4.016 18 C -0.151 4.151 19 C 0.020 3.980 20 N -0.266 5.266 21 N -0.343 5.343 22 C 0.478 3.522 23 F -0.157 7.157 24 F -0.151 7.151 25 C 0.065 3.935 26 H 0.065 0.935 27 O -0.571 6.571 28 C 0.146 3.854 29 H 0.254 0.746 30 H 0.021 0.979 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.399 0.601 35 H 0.171 0.829 36 H 0.197 0.803 37 H 0.179 0.821 38 H 0.376 0.624 39 H 0.093 0.907 40 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.832 -11.228 0.003 13.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.194 4.194 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.086 0.914 9 N -0.309 5.309 10 C 0.017 3.983 11 C -0.186 4.186 12 C 0.059 3.941 13 H 0.100 0.900 14 N -0.362 5.362 15 C 0.364 3.636 16 O -0.406 6.406 17 C -0.140 4.140 18 C -0.179 4.179 19 C -0.160 4.160 20 N -0.095 5.095 21 N -0.142 5.142 22 C 0.345 3.655 23 F -0.138 7.138 24 F -0.132 7.132 25 C 0.004 3.996 26 H 0.083 0.917 27 O -0.376 6.376 28 C 0.019 3.981 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.245 0.755 35 H 0.189 0.811 36 H 0.214 0.786 37 H 0.195 0.805 38 H 0.223 0.777 39 H 0.111 0.889 40 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -7.078 -11.261 -0.285 13.304 hybrid contribution 0.752 1.349 0.378 1.590 sum -6.327 -9.912 0.093 11.760 Atomic orbital electron populations 1.70013 1.05273 1.25637 1.53767 1.25052 0.95311 0.98469 1.00614 0.86293 0.79200 0.83438 0.77818 1.21317 1.21534 1.20420 1.19194 0.92665 0.84550 1.41958 0.91419 1.43916 1.35699 1.01839 1.49476 1.20951 0.98020 0.86484 0.92853 1.22420 0.96376 1.00464 0.99323 1.20904 0.85560 0.94907 0.92686 0.89982 1.46665 1.31209 1.06400 1.51928 1.16947 0.83038 0.83386 0.80272 1.90795 1.45926 1.54092 1.49826 1.22172 0.95719 0.92418 1.03720 1.22312 0.98406 0.95675 1.01530 1.23803 0.97819 0.93218 1.01180 1.73092 1.15811 1.04116 1.16498 1.46964 1.21362 1.06912 1.38919 1.21413 0.89035 0.74778 0.80302 1.93151 1.95321 1.88305 1.37017 1.93193 1.49920 1.85406 1.84658 1.22961 0.88007 0.95624 0.93015 0.91673 1.86427 1.48357 1.36779 1.65988 1.21401 0.89585 0.98465 0.88600 0.93556 0.96146 0.92322 0.91612 0.90759 0.75491 0.81148 0.78592 0.80454 0.77741 0.88889 0.95978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.56 11.20 55.49 0.62 -23.94 16 2 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 3 Si 0.90 20.73 29.59 -169.99 -5.03 15.70 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.25 -6.64 9.58 -15.06 -0.14 -6.78 16 8 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -13.90 2.99 -172.31 -0.52 -14.42 16 10 C 0.14 3.00 6.26 -3.71 -0.02 2.98 16 11 C -0.15 -2.69 5.77 -26.61 -0.15 -2.84 16 12 C 0.16 3.08 2.47 -67.89 -0.17 2.92 16 13 H 0.08 1.57 7.57 -51.93 -0.39 1.18 16 14 N -0.70 -13.01 3.58 -54.92 -0.20 -13.20 16 15 C 0.58 10.60 7.76 -12.63 -0.10 10.50 16 16 O -0.53 -10.59 16.58 5.25 0.09 -10.50 16 17 C -0.02 -0.25 6.85 -82.06 -0.56 -0.81 16 18 C -0.15 -1.90 10.85 -38.98 -0.42 -2.32 16 19 C 0.02 0.21 12.03 -17.43 -0.21 0.00 16 20 N -0.27 -3.39 11.90 30.59 0.36 -3.03 16 21 N -0.34 -4.88 3.61 -62.39 -0.23 -5.10 16 22 C 0.48 6.52 5.64 59.85 0.34 6.86 16 23 F -0.16 -2.41 15.18 2.25 0.03 -2.38 16 24 F -0.15 -2.53 14.09 2.25 0.03 -2.50 16 25 C 0.06 1.23 3.36 -26.61 -0.09 1.15 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 27 O -0.57 -10.05 13.21 -35.23 -0.47 -10.52 16 28 C 0.15 3.26 4.64 -3.71 -0.02 3.24 16 29 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.02 0.45 7.00 -51.93 -0.36 0.08 16 31 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.40 7.35 0.88 -40.82 -0.04 7.31 16 35 H 0.17 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.20 1.22 8.06 -52.48 -0.42 0.79 16 37 H 0.18 1.62 8.14 -51.93 -0.42 1.20 16 38 H 0.38 5.27 9.08 45.56 0.41 5.68 16 39 H 0.09 2.29 6.06 -51.93 -0.31 1.98 16 40 H 0.02 0.52 6.02 -51.93 -0.31 0.21 16 LS Contribution 332.80 15.07 5.02 5.02 Total: -1.00 -32.20 332.80 -5.42 -37.62 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -3.50 Total: 12.33 kcal Atomic # 6 Polarization: 16.55 SS G_CDS: -1.64 Total: 14.92 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 0.05 Total: -59.70 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.38 Total: -21.02 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.07 Total: -4.88 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.20 -5.42 -37.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090295992.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.549 kcal (2) G-P(sol) polarization free energy of solvation -32.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds