Wall clock time and date at job start Tue Mar 31 2020 05:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48504 * 109.47115 * 269.99738 * 3 2 1 5 5 H 1.48500 * 109.47480 * 29.99939 * 3 2 1 6 6 H 1.48499 * 109.47007 * 149.99970 * 3 2 1 7 7 C 1.38815 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99487 * 163.17858 * 7 2 1 9 9 N 1.36930 * 119.99653 * 343.18307 * 7 2 1 10 10 C 1.46930 * 120.63022 * 151.86794 * 9 7 2 11 11 C 1.53190 * 108.78004 * 126.11089 * 10 9 7 12 12 C 1.53041 * 109.31007 * 54.63565 * 11 10 9 13 13 H 1.09000 * 109.45950 * 178.61420 * 12 11 10 14 14 N 1.46501 * 109.46021 * 58.64227 * 12 11 10 15 15 C 1.34778 * 119.99872 * 84.99761 * 14 12 11 16 16 O 1.21632 * 119.99891 * 0.02562 * 15 14 12 17 17 C 1.47167 * 119.99956 * 179.97438 * 15 14 12 18 18 C 1.38404 * 126.88173 * 180.02562 * 17 15 14 19 19 C 1.39674 * 105.35759 * 180.02562 * 18 17 15 20 20 N 1.30870 * 107.86143 * 0.02562 * 19 18 17 21 21 N 1.28446 * 110.92551 * 359.71167 * 20 19 18 22 22 C 1.46497 * 125.18934 * 180.28183 * 21 20 19 23 23 F 1.39907 * 109.46993 * 120.20822 * 22 21 20 24 24 F 1.39897 * 109.47332 * 240.20977 * 22 21 20 25 25 C 1.53040 * 109.54016 * 298.63506 * 12 11 10 26 26 H 1.08998 * 109.49957 * 301.38253 * 25 12 11 27 27 O 1.42903 * 109.49907 * 181.31360 * 25 12 11 28 28 C 1.46924 * 120.63656 * 331.58373 * 9 7 2 29 29 H 0.97002 * 120.00123 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.58909 * 245.90295 * 10 9 7 31 31 H 1.09002 * 109.58437 * 6.18367 * 10 9 7 32 32 H 1.08994 * 109.50234 * 174.58829 * 11 10 9 33 33 H 1.09003 * 109.49722 * 294.65532 * 11 10 9 34 34 H 0.97000 * 120.00338 * 265.00323 * 14 12 11 35 35 H 1.08001 * 127.32362 * 0.02585 * 18 17 15 36 36 H 1.08003 * 126.07061 * 179.97438 * 19 18 17 37 37 H 1.08994 * 109.47239 * 0.21282 * 22 21 20 38 38 H 0.96697 * 113.99574 * 180.02562 * 27 25 12 39 39 H 1.09002 * 109.58161 * 353.67314 * 28 9 7 40 40 H 1.09004 * 109.59038 * 114.09689 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0556 -1.2222 -0.2701 9 7 1.3695 -2.3625 0.3442 10 6 1.8147 -3.6528 -0.1996 11 6 2.0730 -4.6155 0.9637 12 6 0.8197 -4.7006 1.8380 13 1 0.9924 -5.4038 2.6527 14 7 -0.3105 -5.1607 1.0274 15 6 -0.5105 -6.4800 0.8372 16 8 0.2471 -7.2885 1.3390 17 6 -1.6462 -6.9422 0.0234 18 6 -1.9840 -8.2537 -0.2624 19 6 -3.1267 -8.1755 -1.0618 20 7 -3.4195 -6.9099 -1.2209 21 7 -2.5808 -6.1631 -0.5975 22 6 -2.6186 -4.6991 -0.5610 23 9 -2.7447 -4.2688 0.7643 24 9 -1.4360 -4.1883 -1.1066 25 6 0.5036 -3.3190 2.4154 26 1 1.3537 -2.9653 2.9987 27 8 -0.6488 -3.4056 3.2560 28 6 0.2276 -2.3417 1.2684 29 1 -0.4850 0.8401 -0.0004 30 1 1.0404 -4.0628 -0.8481 31 1 2.7325 -3.5116 -0.7704 32 1 2.3110 -5.6043 0.5718 33 1 2.9089 -4.2496 1.5600 34 1 -0.9149 -4.5160 0.6274 35 1 -1.4727 -9.1474 0.0633 36 1 -3.6715 -9.0111 -1.4758 37 1 -3.4698 -4.3431 -1.1411 38 1 -0.9075 -2.5644 3.6565 39 1 0.0995 -1.3358 1.6683 40 1 -0.6762 -2.6447 0.7396 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090295992.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:09 Heat of formation + Delta-G solvation = -75.243694 kcal Electronic energy + Delta-G solvation = -31050.229966 eV Core-core repulsion = 26538.625510 eV Total energy + Delta-G solvation = -4511.604456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -51.02356 -48.83248 -43.66590 -41.18982 -39.34286 -36.90220 -35.83285 -34.22843 -33.63304 -32.35174 -31.15124 -30.48079 -27.59498 -27.21770 -24.93330 -23.90297 -23.54275 -23.04541 -21.85759 -20.57248 -20.34982 -19.22547 -18.87794 -18.56816 -18.14477 -17.76942 -17.08218 -16.91071 -16.72690 -16.06859 -15.91100 -15.72075 -15.55849 -15.45320 -15.35196 -15.14747 -15.02782 -14.65055 -14.47340 -14.25482 -13.92790 -13.64454 -13.35791 -13.22269 -12.90310 -12.71952 -12.65199 -12.25543 -12.17714 -12.04087 -11.85270 -11.43189 -11.23599 -10.97861 -10.77284 -10.59610 -10.47154 -10.13308 -8.71449 -7.89895 -5.36066 -0.14854 0.49844 1.42772 1.47545 1.50393 1.58975 1.89614 1.97462 2.24182 2.49694 2.87633 3.06617 3.20885 3.26154 3.29580 3.61433 3.79534 3.83712 4.00760 4.06214 4.21045 4.30352 4.31210 4.40566 4.63481 4.74939 4.80851 4.87816 5.01131 5.04442 5.11672 5.23998 5.36405 5.41450 5.54081 5.64766 6.24122 6.34167 6.65280 6.77701 6.87769 7.11341 7.78084 8.31758 9.16253 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.018250 B = 0.004641 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.901704 B = 6031.786131 C = 6529.697482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.040 4.040 3 Si 0.965 3.035 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.272 1.272 7 C -0.267 4.267 8 H 0.068 0.932 9 N -0.598 5.598 10 C 0.144 3.856 11 C -0.133 4.133 12 C 0.162 3.838 13 H 0.082 0.918 14 N -0.706 5.706 15 C 0.576 3.424 16 O -0.556 6.556 17 C -0.058 4.058 18 C -0.136 4.136 19 C 0.036 3.964 20 N -0.270 5.270 21 N -0.349 5.349 22 C 0.470 3.530 23 F -0.171 7.171 24 F -0.174 7.174 25 C 0.079 3.921 26 H 0.071 0.929 27 O -0.573 6.573 28 C 0.159 3.841 29 H 0.252 0.748 30 H 0.010 0.990 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.399 0.601 35 H 0.189 0.811 36 H 0.245 0.755 37 H 0.222 0.778 38 H 0.391 0.609 39 H 0.067 0.933 40 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.342 -12.444 -0.263 14.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.236 4.236 3 Si 0.793 3.207 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.197 1.197 7 C -0.397 4.397 8 H 0.086 0.914 9 N -0.322 5.322 10 C 0.019 3.981 11 C -0.173 4.173 12 C 0.057 3.943 13 H 0.100 0.900 14 N -0.366 5.366 15 C 0.362 3.638 16 O -0.434 6.434 17 C -0.182 4.182 18 C -0.164 4.164 19 C -0.144 4.144 20 N -0.099 5.099 21 N -0.147 5.147 22 C 0.337 3.663 23 F -0.152 7.152 24 F -0.155 7.155 25 C 0.018 3.982 26 H 0.089 0.911 27 O -0.380 6.380 28 C 0.032 3.968 29 H 0.061 0.939 30 H 0.028 0.972 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.246 0.754 35 H 0.206 0.794 36 H 0.261 0.739 37 H 0.238 0.762 38 H 0.241 0.759 39 H 0.085 0.915 40 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -7.591 -12.481 -0.544 14.618 hybrid contribution 0.836 1.624 0.416 1.873 sum -6.755 -10.857 -0.128 12.787 Atomic orbital electron populations 1.70144 1.06406 1.25973 1.54767 1.25715 0.96022 1.01133 1.00775 0.85334 0.78176 0.79766 0.77453 1.21440 1.21757 1.19701 1.19478 0.92914 0.85632 1.41692 0.91449 1.44087 1.35830 1.02183 1.50110 1.20984 0.97563 0.85879 0.93692 1.22284 0.96646 1.00029 0.98360 1.20889 0.85993 0.94537 0.92879 0.90033 1.46723 1.31116 1.06849 1.51945 1.17309 0.83518 0.82913 0.80068 1.90759 1.47119 1.54453 1.51069 1.22079 0.96374 0.93971 1.05757 1.22739 0.98429 0.95023 1.00233 1.24599 0.96803 0.93507 0.99506 1.73119 1.15507 1.04999 1.16254 1.46955 1.21489 1.06892 1.39393 1.22079 0.89297 0.74913 0.80015 1.93109 1.95262 1.88561 1.38285 1.93136 1.51616 1.85882 1.84889 1.22676 0.88561 0.94936 0.92032 0.91133 1.86407 1.47838 1.38115 1.65602 1.21194 0.88719 0.97748 0.89129 0.93913 0.97156 0.92189 0.90867 0.89729 0.75419 0.79382 0.73909 0.76237 0.75935 0.91472 0.97484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.26 11.20 21.65 0.24 -51.02 16 2 C -0.04 -2.13 4.92 84.86 0.42 -1.71 16 3 Si 0.96 42.78 29.59 68.60 2.03 44.81 16 4 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.27 -14.03 9.58 84.04 0.81 -13.23 16 8 H 0.07 3.47 7.88 -2.91 -0.02 3.45 16 9 N -0.60 -28.70 2.99 -699.08 -2.09 -30.79 16 10 C 0.14 6.09 6.26 86.36 0.54 6.63 16 11 C -0.13 -4.86 5.77 30.67 0.18 -4.68 16 12 C 0.16 6.07 2.47 45.02 0.11 6.18 16 13 H 0.08 3.09 7.57 -2.39 -0.02 3.07 16 14 N -0.71 -26.34 3.58 -445.91 -1.60 -27.94 16 15 C 0.58 21.03 7.76 86.59 0.67 21.70 16 16 O -0.56 -22.09 16.58 -4.13 -0.07 -22.16 16 17 C -0.06 -1.77 6.85 40.79 0.28 -1.50 16 18 C -0.14 -3.08 10.85 22.66 0.25 -2.84 16 19 C 0.04 0.64 12.03 85.18 1.02 1.66 16 20 N -0.27 -6.22 11.90 -57.13 -0.68 -6.90 16 21 N -0.35 -9.52 3.61 -351.30 -1.27 -10.79 16 22 C 0.47 12.67 5.64 127.77 0.72 13.39 16 23 F -0.17 -5.31 15.18 44.97 0.68 -4.63 16 24 F -0.17 -5.97 14.09 44.97 0.63 -5.34 16 25 C 0.08 3.01 3.36 30.67 0.10 3.11 16 26 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 27 O -0.57 -19.98 13.21 -148.98 -1.97 -21.95 16 28 C 0.16 7.20 4.64 86.36 0.40 7.60 16 29 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 30 H 0.01 0.46 7.00 -2.39 -0.02 0.45 16 31 H 0.06 2.46 7.93 -2.39 -0.02 2.45 16 32 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 34 H 0.40 14.91 0.88 -92.71 -0.08 14.83 16 35 H 0.19 3.48 8.06 -2.91 -0.02 3.46 16 36 H 0.24 1.72 8.06 -2.91 -0.02 1.69 16 37 H 0.22 3.76 8.14 -2.39 -0.02 3.74 16 38 H 0.39 10.80 9.08 -74.06 -0.67 10.13 16 39 H 0.07 3.39 6.06 -2.39 -0.01 3.37 16 40 H 0.01 0.35 6.02 -2.38 -0.01 0.33 16 Total: -1.00 -69.62 332.80 1.78 -67.85 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: 0.37 Total: 32.53 kcal Atomic # 6 Polarization: 30.82 SS G_CDS: 5.50 Total: 36.32 kcal Atomic # 7 Polarization: -122.04 SS G_CDS: -5.39 Total: -127.43 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -2.04 Total: -44.11 kcal Atomic # 9 Polarization: -11.28 SS G_CDS: 1.32 Total: -9.97 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -69.62 1.78 -67.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090295992.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.398 kcal (2) G-P(sol) polarization free energy of solvation -69.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds