Wall clock time and date at job start Tue Mar 31 2020 05:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99991 * 2 1 4 4 H 1.48499 * 109.47066 * 269.99686 * 3 2 1 5 5 H 1.48498 * 109.47132 * 29.99559 * 3 2 1 6 6 H 1.48503 * 109.47161 * 149.99502 * 3 2 1 7 7 C 1.38811 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00017 * 163.09090 * 7 2 1 9 9 N 1.36940 * 120.00143 * 343.08104 * 7 2 1 10 10 C 1.46922 * 120.63392 * 331.81817 * 9 7 2 11 11 C 1.53191 * 108.76326 * 233.63486 * 10 9 7 12 12 C 1.53040 * 109.31139 * 305.34091 * 11 10 9 13 13 H 1.08997 * 109.46269 * 301.37205 * 12 11 10 14 14 N 1.46496 * 109.45928 * 181.40024 * 12 11 10 15 15 C 1.34782 * 120.00227 * 84.97218 * 14 12 11 16 16 O 1.21625 * 119.99435 * 0.02562 * 15 14 12 17 17 C 1.47161 * 120.00017 * 179.97438 * 15 14 12 18 18 C 1.38406 * 126.87961 * 180.02562 * 17 15 14 19 19 C 1.39671 * 105.35531 * 179.73733 * 18 17 15 20 20 N 1.30865 * 107.86715 * 0.26586 * 19 18 17 21 21 N 1.28445 * 110.92319 * 359.97438 * 20 19 18 22 22 C 1.46496 * 125.18929 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.47113 * 119.98291 * 22 21 20 24 24 F 1.39907 * 109.47192 * 239.97856 * 22 21 20 25 25 C 1.53041 * 109.52562 * 61.38626 * 12 11 10 26 26 H 1.08999 * 109.49735 * 58.61291 * 25 12 11 27 27 O 1.42904 * 109.49454 * 178.67777 * 25 12 11 28 28 C 1.46930 * 120.62804 * 151.82928 * 9 7 2 29 29 H 0.97006 * 120.00357 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.58385 * 353.41136 * 10 9 7 31 31 H 1.09000 * 109.59017 * 113.69391 * 10 9 7 32 32 H 1.09001 * 109.48864 * 185.39722 * 11 10 9 33 33 H 1.09003 * 109.50853 * 65.30077 * 11 10 9 34 34 H 0.97000 * 120.00284 * 264.96660 * 14 12 11 35 35 H 1.08002 * 127.32436 * 0.02562 * 18 17 15 36 36 H 1.08008 * 126.06719 * 180.25919 * 19 18 17 37 37 H 1.09002 * 109.47534 * 359.97438 * 22 21 20 38 38 H 0.96701 * 113.99937 * 180.02562 * 27 25 12 39 39 H 1.09003 * 109.58537 * 6.59200 * 28 9 7 40 40 H 1.08991 * 109.70584 * 246.23602 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2225 -0.2715 9 7 1.3699 -2.3623 0.3462 10 6 0.2262 -2.3401 1.2682 11 6 0.4987 -3.3187 2.4149 12 6 0.8131 -4.7005 1.8370 13 1 -0.0272 -5.0409 1.2321 14 7 1.0414 -5.6468 2.9318 15 6 -0.0031 -6.2695 3.5132 16 8 -1.1350 -6.0459 3.1286 17 6 0.2263 -7.2206 4.6125 18 6 -0.7344 -7.9352 5.3066 19 6 -0.0268 -8.6972 6.2390 20 7 1.2461 -8.4316 6.0915 21 7 1.4298 -7.5727 5.1543 22 6 2.7318 -7.0538 4.7281 23 9 2.9379 -7.3623 3.3792 24 9 2.7589 -5.6654 4.8982 25 6 2.0682 -4.6169 0.9653 26 1 2.9034 -4.2532 1.5639 27 8 2.3789 -5.9134 0.4510 28 6 1.8139 -3.6529 -0.1978 29 1 -0.4851 0.8401 -0.0004 30 1 0.0992 -1.3343 1.6686 31 1 -0.6774 -2.6386 0.7368 32 1 -0.3816 -3.3836 3.0545 33 1 1.3487 -2.9668 2.9996 34 1 1.9442 -5.8255 3.2382 35 1 -1.8036 -7.9124 5.1559 36 1 -0.4543 -9.3837 6.9549 37 1 3.5189 -7.5088 5.3293 38 1 3.1651 -5.9354 -0.1115 39 1 2.7344 -3.5134 -0.7646 40 1 1.0420 -4.0621 -0.8495 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090295993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:14 Heat of formation + Delta-G solvation = -52.203882 kcal Electronic energy + Delta-G solvation = -29929.740143 eV Core-core repulsion = 25419.134768 eV Total energy + Delta-G solvation = -4510.605375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.24508 -48.04721 -42.83166 -39.66404 -37.90689 -35.41563 -34.51030 -33.22614 -32.09691 -31.22741 -29.87666 -28.55111 -26.78584 -25.38579 -23.46894 -22.37425 -22.29869 -21.61711 -20.72998 -19.85860 -18.91523 -18.46568 -17.86587 -17.17882 -16.75762 -16.48724 -15.98352 -15.84456 -15.18747 -14.83359 -14.77296 -14.39786 -14.36300 -14.34405 -14.07956 -13.95792 -13.67353 -13.40259 -13.18981 -12.81985 -12.57707 -12.29706 -12.08166 -11.57912 -11.41048 -11.12904 -10.88072 -10.69895 -10.35467 -10.30869 -10.13379 -9.97508 -9.94270 -9.75693 -9.51380 -9.48279 -8.84314 -8.48191 -6.78295 -5.86243 -3.30744 0.82517 1.28411 2.20532 2.84837 3.10322 3.14951 3.33590 3.40806 3.42509 3.46243 3.96297 4.28187 4.37881 4.47625 4.51456 4.83228 5.15102 5.26263 5.31430 5.45686 5.50052 5.52278 5.73741 5.90690 5.95816 6.07447 6.09524 6.21322 6.45314 6.47926 6.63814 6.74645 6.76499 7.26570 7.36725 7.55643 7.60042 7.71626 7.91083 8.15524 8.36414 9.11676 9.74007 10.30111 11.22431 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.021051 B = 0.003474 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.807027 B = 8058.338083 C = 8307.825277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.006 3.994 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.261 4.261 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.147 4.147 12 C 0.163 3.837 13 H 0.091 0.909 14 N -0.713 5.713 15 C 0.579 3.421 16 O -0.517 6.517 17 C -0.015 4.015 18 C -0.148 4.148 19 C 0.025 3.975 20 N -0.269 5.269 21 N -0.347 5.347 22 C 0.481 3.519 23 F -0.157 7.157 24 F -0.164 7.164 25 C 0.080 3.920 26 H 0.055 0.945 27 O -0.569 6.569 28 C 0.122 3.878 29 H 0.256 0.744 30 H 0.094 0.906 31 H 0.026 0.974 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.388 0.612 35 H 0.173 0.827 36 H 0.199 0.801 37 H 0.181 0.819 38 H 0.374 0.626 39 H 0.061 0.939 40 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.548 -17.025 11.882 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.193 4.193 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.390 4.390 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.046 3.954 11 C -0.187 4.187 12 C 0.059 3.941 13 H 0.109 0.891 14 N -0.371 5.371 15 C 0.363 3.637 16 O -0.392 6.392 17 C -0.139 4.139 18 C -0.176 4.176 19 C -0.156 4.156 20 N -0.097 5.097 21 N -0.146 5.146 22 C 0.348 3.652 23 F -0.139 7.139 24 F -0.145 7.145 25 C 0.019 3.981 26 H 0.073 0.927 27 O -0.373 6.373 28 C -0.006 4.006 29 H 0.066 0.934 30 H 0.112 0.888 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.231 0.769 35 H 0.190 0.810 36 H 0.215 0.785 37 H 0.197 0.803 38 H 0.220 0.780 39 H 0.079 0.921 40 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.346 -16.991 12.217 21.599 hybrid contribution 0.560 1.234 -0.589 1.478 sum 5.907 -15.757 11.628 20.454 Atomic orbital electron populations 1.70028 1.05304 1.25779 1.53075 1.25079 0.95301 0.98536 1.00412 0.86284 0.79142 0.83473 0.77761 1.21300 1.21450 1.20435 1.19143 0.92544 0.84589 1.42734 0.91559 1.44038 1.35930 1.01176 1.50022 1.20830 0.88775 0.98237 0.87588 1.22624 1.01137 0.94111 1.00859 1.21092 0.97928 0.89003 0.86052 0.89072 1.46736 1.09533 1.44089 1.36776 1.16938 0.85864 0.79841 0.81093 1.90851 1.21913 1.63666 1.62770 1.22235 0.86132 1.04161 1.01366 1.22374 1.00692 0.97896 0.96658 1.23833 0.88152 1.02210 1.01417 1.73088 1.22208 1.07366 1.07081 1.46827 1.06288 1.33709 1.27737 1.21356 0.85652 0.77291 0.80936 1.93151 1.93909 1.92111 1.34696 1.93129 1.95910 1.30794 1.94684 1.22767 0.95792 0.83371 0.96147 0.92734 1.86499 1.50609 1.30292 1.69907 1.21519 0.98911 0.87352 0.92803 0.93408 0.88798 0.95633 0.91818 0.92261 0.76929 0.80954 0.78461 0.80267 0.78004 0.92061 0.95180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.76 11.20 55.49 0.62 -25.14 16 2 C 0.01 0.16 4.92 -17.43 -0.09 0.08 16 3 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.26 -6.97 9.58 -15.06 -0.14 -7.11 16 8 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 9 N -0.59 -14.45 2.99 -172.32 -0.52 -14.96 16 10 C 0.17 4.14 5.30 -3.71 -0.02 4.12 16 11 C -0.15 -2.98 5.65 -26.61 -0.15 -3.13 16 12 C 0.16 3.08 2.12 -67.89 -0.14 2.94 16 13 H 0.09 1.93 7.57 -51.93 -0.39 1.54 16 14 N -0.71 -11.97 4.35 -54.93 -0.24 -12.21 16 15 C 0.58 9.99 7.76 -12.64 -0.10 9.89 16 16 O -0.52 -10.43 16.58 5.26 0.09 -10.34 16 17 C -0.01 -0.21 6.85 -82.06 -0.56 -0.77 16 18 C -0.15 -1.69 10.85 -38.98 -0.42 -2.11 16 19 C 0.02 0.22 12.03 -17.43 -0.21 0.01 16 20 N -0.27 -2.85 11.90 30.59 0.36 -2.48 16 21 N -0.35 -4.03 3.61 -62.39 -0.23 -4.26 16 22 C 0.48 4.46 5.64 59.84 0.34 4.79 16 23 F -0.16 -1.73 15.27 2.25 0.03 -1.69 16 24 F -0.16 -1.80 15.36 2.25 0.03 -1.77 16 25 C 0.08 1.42 3.14 -26.61 -0.08 1.33 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 O -0.57 -8.83 13.16 -35.23 -0.46 -9.30 16 28 C 0.12 2.50 6.14 -3.71 -0.02 2.47 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.09 2.50 6.06 -51.93 -0.31 2.18 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.39 5.79 2.55 -40.82 -0.10 5.68 16 35 H 0.17 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.20 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.18 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.37 4.15 9.08 45.56 0.41 4.57 16 39 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 339.67 15.07 5.12 5.12 Total: -1.00 -33.92 339.67 -5.56 -39.48 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -3.74 Total: 8.84 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: -1.61 Total: 12.52 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 0.01 Total: -59.06 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.38 Total: -19.64 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.07 Total: -3.46 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.92 -5.56 -39.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090295993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.721 kcal (2) G-P(sol) polarization free energy of solvation -33.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds