Wall clock time and date at job start Tue Mar 31 2020 05:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00068 * 2 1 4 4 H 1.48501 * 109.46686 * 90.00075 * 3 2 1 5 5 H 1.48499 * 109.47518 * 210.00078 * 3 2 1 6 6 H 1.48502 * 109.46873 * 330.00238 * 3 2 1 7 7 C 1.38811 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00157 * 162.76785 * 7 2 1 9 9 N 1.36943 * 119.99955 * 342.76805 * 7 2 1 10 10 C 1.46923 * 120.62930 * 332.17173 * 9 7 2 11 11 C 1.52755 * 109.00900 * 233.58508 * 10 9 7 12 12 C 1.53044 * 109.38132 * 305.58408 * 11 10 9 13 13 H 1.08996 * 109.45012 * 301.22835 * 12 11 10 14 14 N 1.46499 * 109.46007 * 181.25927 * 12 11 10 15 15 C 1.34781 * 119.99985 * 84.93549 * 14 12 11 16 16 O 1.21600 * 119.99470 * 0.02562 * 15 14 12 17 17 C 1.47433 * 119.99999 * 179.97438 * 15 14 12 18 18 C 1.41292 * 126.41466 * 0.02740 * 17 15 14 19 19 N 1.30445 * 108.01806 * 179.97438 * 18 17 15 20 20 N 1.39925 * 108.90125 * 359.97438 * 19 18 17 21 21 C 1.46501 * 125.75398 * 179.97438 * 20 19 18 22 22 F 1.39903 * 109.47074 * 120.02407 * 21 20 19 23 23 F 1.39902 * 109.47106 * 240.02154 * 21 20 19 24 24 C 1.34259 * 108.49481 * 359.74917 * 20 19 18 25 25 C 1.53046 * 109.53404 * 61.24392 * 12 11 10 26 26 H 1.08999 * 109.49861 * 58.58399 * 25 12 11 27 27 O 1.42898 * 109.49343 * 178.68351 * 25 12 11 28 28 C 1.46927 * 120.63120 * 152.45061 * 9 7 2 29 29 H 0.96995 * 120.00322 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.58782 * 353.41781 * 10 9 7 31 31 H 1.09006 * 109.58879 * 113.84066 * 10 9 7 32 32 H 1.09007 * 109.56573 * 185.55521 * 11 10 9 33 33 H 1.09002 * 109.36461 * 65.49364 * 11 10 9 34 34 H 0.97006 * 120.00167 * 264.93568 * 14 12 11 35 35 H 1.08004 * 125.98972 * 359.97438 * 18 17 15 36 36 H 1.08994 * 109.47231 * 0.02562 * 21 20 19 37 37 H 1.07997 * 126.29747 * 180.24682 * 24 20 19 38 38 H 0.96702 * 113.99942 * 179.83960 * 27 25 12 39 39 H 1.09004 * 109.58525 * 246.16048 * 28 9 7 40 40 H 1.08995 * 109.58430 * 6.43945 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0463 1.4001 5 1 3.5477 1.4403 -0.7000 6 1 1.4475 2.6527 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0539 -1.2230 -0.2776 9 7 1.3717 -2.3616 0.3503 10 6 0.2275 -2.3368 1.2716 11 6 0.4938 -3.3061 2.4218 12 6 0.8147 -4.6910 1.8549 13 1 -0.0220 -5.0379 1.2487 14 7 1.0409 -5.6291 2.9572 15 6 -0.0044 -6.2502 3.5387 16 8 -1.1351 -6.0321 3.1481 17 6 0.2232 -7.1947 4.6476 18 6 1.4723 -7.5472 5.2061 19 7 1.2580 -8.4067 6.1637 20 7 -0.1178 -8.6414 6.2626 21 6 -0.7657 -9.5451 7.2165 22 9 -1.6537 -8.8190 8.0175 23 9 -1.4683 -10.5335 6.5191 24 6 -0.7447 -7.8950 5.3394 25 6 2.0734 -4.6099 0.9881 26 1 2.9048 -4.2393 1.5876 27 8 2.3898 -5.9091 0.4841 28 6 1.8216 -3.6548 -0.1828 29 1 -0.4850 0.8400 0.0004 30 1 0.0986 -1.3293 1.6671 31 1 -0.6750 -2.6418 0.7418 32 1 -0.3892 -3.3692 3.0579 33 1 1.3401 -2.9478 3.0078 34 1 1.9430 -5.8033 3.2685 35 1 2.4356 -7.1710 4.8947 36 1 -0.0084 -10.0129 7.8456 37 1 -1.8100 -7.8525 5.1673 38 1 3.1770 -5.9323 -0.0771 39 1 1.0518 -4.0695 -0.8336 40 1 2.7427 -3.5162 -0.7487 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090680621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:19 Heat of formation + Delta-G solvation = -73.325642 kcal Electronic energy + Delta-G solvation = -28119.133243 eV Core-core repulsion = 23607.611960 eV Total energy + Delta-G solvation = -4511.521283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.86325 -47.96033 -41.70518 -39.46506 -37.79590 -35.41311 -34.33063 -33.24996 -31.92323 -30.85949 -29.90659 -28.57401 -26.78041 -25.12687 -23.22781 -22.30950 -22.02970 -21.41945 -20.25905 -19.59657 -18.86097 -18.33595 -18.01390 -17.19925 -16.76133 -16.40347 -15.84868 -15.44511 -15.32964 -14.86268 -14.73969 -14.29670 -14.26968 -14.12430 -14.02116 -13.89715 -13.64032 -13.23286 -13.16588 -12.78299 -12.65794 -12.28013 -12.06230 -11.63486 -11.56947 -11.11235 -10.89029 -10.66977 -10.39275 -10.33783 -10.25075 -9.96329 -9.85562 -9.72669 -9.45184 -9.26812 -8.72278 -8.44600 -6.78008 -5.85174 -3.29467 1.02089 1.22886 1.82545 2.95780 3.31775 3.35278 3.41215 3.42774 3.48353 3.62988 4.06116 4.19614 4.34476 4.38861 4.52536 4.82647 4.94459 5.28176 5.30778 5.38141 5.48812 5.55820 5.76940 5.86210 5.97424 6.05204 6.12389 6.33087 6.48237 6.53399 6.67689 6.77628 6.87448 6.93622 7.29542 7.60801 7.72683 7.75882 7.91633 8.37261 8.45674 9.12824 9.75264 10.30923 11.23416 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.024749 B = 0.002433 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.072535 B =11506.957213 C =11940.608203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.279 1.279 6 H -0.291 1.291 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.146 4.146 12 C 0.165 3.835 13 H 0.089 0.911 14 N -0.709 5.709 15 C 0.590 3.410 16 O -0.545 6.545 17 C -0.268 4.268 18 C 0.103 3.897 19 N -0.281 5.281 20 N -0.429 5.429 21 C 0.504 3.496 22 F -0.178 7.178 23 F -0.178 7.178 24 C 0.140 3.860 25 C 0.080 3.920 26 H 0.057 0.943 27 O -0.571 6.571 28 C 0.121 3.879 29 H 0.256 0.744 30 H 0.093 0.907 31 H 0.024 0.976 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.395 0.605 35 H 0.201 0.799 36 H 0.169 0.831 37 H 0.193 0.807 38 H 0.374 0.626 39 H 0.029 0.971 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.054 -18.671 13.660 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.204 1.204 6 H -0.217 1.217 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.044 3.956 11 C -0.187 4.187 12 C 0.061 3.939 13 H 0.107 0.893 14 N -0.358 5.358 15 C 0.376 3.624 16 O -0.423 6.423 17 C -0.282 4.282 18 C -0.087 4.087 19 N -0.099 5.099 20 N -0.218 5.218 21 C 0.369 3.631 22 F -0.160 7.160 23 F -0.160 7.160 24 C -0.006 4.006 25 C 0.019 3.981 26 H 0.075 0.925 27 O -0.375 6.375 28 C -0.007 4.007 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.228 0.772 35 H 0.217 0.783 36 H 0.186 0.814 37 H 0.210 0.790 38 H 0.220 0.780 39 H 0.047 0.953 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.995 -19.365 14.699 24.393 hybrid contribution 0.782 1.455 -0.798 1.835 sum 2.777 -17.910 13.901 22.841 Atomic orbital electron populations 1.70033 1.05286 1.25752 1.53137 1.25070 0.95299 0.98527 1.00517 0.86265 0.79067 0.83518 0.77729 1.21353 1.20414 1.21698 1.19167 0.92665 0.84634 1.42429 0.91508 1.44036 1.35817 1.01028 1.50341 1.20747 0.88729 0.98421 0.87662 1.22540 1.01107 0.94243 1.00794 1.21018 0.97582 0.89195 0.86121 0.89301 1.45840 1.08853 1.44858 1.36227 1.17109 0.84991 0.79297 0.81011 1.90800 1.22528 1.64786 1.64227 1.20542 0.92694 1.09228 1.05755 1.24302 0.99098 0.93367 0.91978 1.77193 0.89693 1.20871 1.22118 1.49610 1.06713 1.36268 1.29241 1.20974 0.84624 0.76873 0.80593 1.93159 1.71396 1.79017 1.72400 1.93156 1.81190 1.60766 1.80877 1.23126 1.00165 0.89573 0.87734 1.22775 0.95941 0.83132 0.96251 0.92549 1.86488 1.50550 1.30213 1.70248 1.21526 0.98806 0.87404 0.92957 0.93424 0.88878 0.95824 0.91812 0.92329 0.77192 0.78284 0.81424 0.78967 0.78002 0.95295 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.66 11.19 55.49 0.62 -25.04 16 2 C 0.01 0.14 4.91 -17.43 -0.09 0.05 16 3 Si 0.90 21.12 29.59 -169.99 -5.03 16.09 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.26 -6.85 9.58 -15.06 -0.14 -6.99 16 8 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 9 N -0.59 -14.18 3.00 -172.58 -0.52 -14.70 16 10 C 0.17 4.03 5.28 -3.94 -0.02 4.01 16 11 C -0.15 -2.83 5.63 -26.83 -0.15 -2.98 16 12 C 0.16 2.89 2.12 -67.88 -0.14 2.75 16 13 H 0.09 1.82 7.58 -51.93 -0.39 1.42 16 14 N -0.71 -10.22 4.91 -54.84 -0.27 -10.49 16 15 C 0.59 9.12 7.78 -12.51 -0.10 9.02 16 16 O -0.55 -10.54 16.56 5.28 0.09 -10.45 16 17 C -0.27 -3.26 6.13 -105.06 -0.64 -3.91 16 18 C 0.10 1.00 11.50 -16.98 -0.20 0.80 16 19 N -0.28 -2.84 12.50 30.86 0.39 -2.45 16 20 N -0.43 -4.09 3.84 -66.09 -0.25 -4.35 16 21 C 0.50 3.26 6.37 59.85 0.38 3.64 16 22 F -0.18 -1.36 17.47 2.25 0.04 -1.32 16 23 F -0.18 -1.35 17.47 2.25 0.04 -1.31 16 24 C 0.14 1.54 11.19 -16.56 -0.19 1.36 16 25 C 0.08 1.31 3.14 -26.61 -0.08 1.23 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 O -0.57 -8.17 13.16 -35.23 -0.46 -8.63 16 28 C 0.12 2.40 6.14 -3.71 -0.02 2.38 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.09 2.45 6.04 -51.93 -0.31 2.14 16 31 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.39 4.48 7.56 -40.82 -0.31 4.18 16 35 H 0.20 1.26 7.50 -52.48 -0.39 0.87 16 36 H 0.17 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.19 1.87 8.06 -52.49 -0.42 1.45 16 38 H 0.37 3.78 9.08 45.56 0.41 4.19 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 LS Contribution 349.59 15.07 5.27 5.27 Total: -1.00 -34.00 349.59 -5.40 -39.40 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -3.92 Total: 6.64 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: -1.39 Total: 11.35 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -0.03 Total: -57.02 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.38 Total: -19.09 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.08 Total: -2.63 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.00 -5.40 -39.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090680621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.926 kcal (2) G-P(sol) polarization free energy of solvation -33.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds