Wall clock time and date at job start Tue Mar 31 2020 05:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00068 * 2 1 4 4 H 1.48501 * 109.46686 * 90.00075 * 3 2 1 5 5 H 1.48499 * 109.47518 * 210.00078 * 3 2 1 6 6 H 1.48502 * 109.46873 * 330.00238 * 3 2 1 7 7 C 1.38811 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00157 * 162.76785 * 7 2 1 9 9 N 1.36943 * 119.99955 * 342.76805 * 7 2 1 10 10 C 1.46923 * 120.62930 * 332.17173 * 9 7 2 11 11 C 1.52755 * 109.00900 * 233.58508 * 10 9 7 12 12 C 1.53044 * 109.38132 * 305.58408 * 11 10 9 13 13 H 1.08996 * 109.45012 * 301.22835 * 12 11 10 14 14 N 1.46499 * 109.46007 * 181.25927 * 12 11 10 15 15 C 1.34781 * 119.99985 * 84.93549 * 14 12 11 16 16 O 1.21600 * 119.99470 * 0.02562 * 15 14 12 17 17 C 1.47433 * 119.99999 * 179.97438 * 15 14 12 18 18 C 1.41292 * 126.41466 * 0.02740 * 17 15 14 19 19 N 1.30445 * 108.01806 * 179.97438 * 18 17 15 20 20 N 1.39925 * 108.90125 * 359.97438 * 19 18 17 21 21 C 1.46501 * 125.75398 * 179.97438 * 20 19 18 22 22 F 1.39903 * 109.47074 * 120.02407 * 21 20 19 23 23 F 1.39902 * 109.47106 * 240.02154 * 21 20 19 24 24 C 1.34259 * 108.49481 * 359.74917 * 20 19 18 25 25 C 1.53046 * 109.53404 * 61.24392 * 12 11 10 26 26 H 1.08999 * 109.49861 * 58.58399 * 25 12 11 27 27 O 1.42898 * 109.49343 * 178.68351 * 25 12 11 28 28 C 1.46927 * 120.63120 * 152.45061 * 9 7 2 29 29 H 0.96995 * 120.00322 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.58782 * 353.41781 * 10 9 7 31 31 H 1.09006 * 109.58879 * 113.84066 * 10 9 7 32 32 H 1.09007 * 109.56573 * 185.55521 * 11 10 9 33 33 H 1.09002 * 109.36461 * 65.49364 * 11 10 9 34 34 H 0.97006 * 120.00167 * 264.93568 * 14 12 11 35 35 H 1.08004 * 125.98972 * 359.97438 * 18 17 15 36 36 H 1.08994 * 109.47231 * 0.02562 * 21 20 19 37 37 H 1.07997 * 126.29747 * 180.24682 * 24 20 19 38 38 H 0.96702 * 113.99942 * 179.83960 * 27 25 12 39 39 H 1.09004 * 109.58525 * 246.16048 * 28 9 7 40 40 H 1.08995 * 109.58430 * 6.43945 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0463 1.4001 5 1 3.5477 1.4403 -0.7000 6 1 1.4475 2.6527 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0539 -1.2230 -0.2776 9 7 1.3717 -2.3616 0.3503 10 6 0.2275 -2.3368 1.2716 11 6 0.4938 -3.3061 2.4218 12 6 0.8147 -4.6910 1.8549 13 1 -0.0220 -5.0379 1.2487 14 7 1.0409 -5.6291 2.9572 15 6 -0.0044 -6.2502 3.5387 16 8 -1.1351 -6.0321 3.1481 17 6 0.2232 -7.1947 4.6476 18 6 1.4723 -7.5472 5.2061 19 7 1.2580 -8.4067 6.1637 20 7 -0.1178 -8.6414 6.2626 21 6 -0.7657 -9.5451 7.2165 22 9 -1.6537 -8.8190 8.0175 23 9 -1.4683 -10.5335 6.5191 24 6 -0.7447 -7.8950 5.3394 25 6 2.0734 -4.6099 0.9881 26 1 2.9048 -4.2393 1.5876 27 8 2.3898 -5.9091 0.4841 28 6 1.8216 -3.6548 -0.1828 29 1 -0.4850 0.8400 0.0004 30 1 0.0986 -1.3293 1.6671 31 1 -0.6750 -2.6418 0.7418 32 1 -0.3892 -3.3692 3.0579 33 1 1.3401 -2.9478 3.0078 34 1 1.9430 -5.8033 3.2685 35 1 2.4356 -7.1710 4.8947 36 1 -0.0084 -10.0129 7.8456 37 1 -1.8100 -7.8525 5.1673 38 1 3.1770 -5.9323 -0.0771 39 1 1.0518 -4.0695 -0.8336 40 1 2.7427 -3.5162 -0.7487 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090680621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:19 Heat of formation + Delta-G solvation = -100.460437 kcal Electronic energy + Delta-G solvation = -28120.309896 eV Core-core repulsion = 23607.611960 eV Total energy + Delta-G solvation = -4512.697936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.41478 -48.51958 -42.52179 -40.78959 -39.22086 -36.94224 -35.74367 -34.15864 -33.57724 -32.01422 -31.32466 -30.13153 -27.71455 -26.70135 -24.50958 -23.80705 -23.22527 -22.43014 -21.42762 -21.03515 -19.80660 -18.90599 -18.89799 -18.55118 -17.97365 -17.66718 -17.20566 -16.75074 -16.27145 -16.18881 -15.69072 -15.57865 -15.47509 -15.19083 -15.03538 -14.87217 -14.83620 -14.62211 -14.41498 -13.99621 -13.83960 -13.56683 -13.25230 -13.24547 -12.94937 -12.71514 -12.50110 -12.32243 -12.09328 -12.01809 -11.86322 -11.35890 -11.13546 -11.07186 -10.91263 -10.55082 -10.25120 -9.88326 -8.74864 -7.88362 -5.35747 0.16260 0.58636 0.98105 1.50097 1.51479 1.60270 2.16085 2.36762 2.50293 2.50940 3.06055 3.17175 3.29143 3.46610 3.52864 3.65589 3.68864 3.88708 3.94649 4.10693 4.13690 4.26287 4.43136 4.49454 4.58147 4.75122 4.88465 4.99651 5.06410 5.15740 5.16849 5.24930 5.41024 5.51618 5.62888 5.68368 6.16494 6.35791 6.62718 6.93654 7.11780 7.29481 7.80351 8.32756 9.19029 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.024749 B = 0.002433 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.072535 B =11506.957213 C =11940.608203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.971 3.029 4 H -0.284 1.284 5 H -0.264 1.264 6 H -0.300 1.300 7 C -0.263 4.263 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.129 4.129 12 C 0.172 3.828 13 H 0.055 0.945 14 N -0.695 5.695 15 C 0.589 3.411 16 O -0.593 6.593 17 C -0.288 4.288 18 C 0.113 3.887 19 N -0.285 5.285 20 N -0.428 5.428 21 C 0.501 3.499 22 F -0.186 7.186 23 F -0.185 7.185 24 C 0.138 3.862 25 C 0.104 3.896 26 H 0.078 0.922 27 O -0.570 6.570 28 C 0.116 3.884 29 H 0.250 0.750 30 H 0.062 0.938 31 H -0.011 1.011 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.414 0.586 35 H 0.233 0.767 36 H 0.212 0.788 37 H 0.197 0.803 38 H 0.396 0.604 39 H 0.010 0.990 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.945 -20.202 15.063 25.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.799 3.201 4 H -0.211 1.211 5 H -0.188 1.188 6 H -0.227 1.227 7 C -0.393 4.393 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.053 3.947 11 C -0.169 4.169 12 C 0.067 3.933 13 H 0.073 0.927 14 N -0.344 5.344 15 C 0.377 3.623 16 O -0.475 6.475 17 C -0.302 4.302 18 C -0.078 4.078 19 N -0.102 5.102 20 N -0.216 5.216 21 C 0.369 3.631 22 F -0.167 7.167 23 F -0.167 7.167 24 C -0.010 4.010 25 C 0.042 3.958 26 H 0.096 0.904 27 O -0.377 6.377 28 C -0.010 4.010 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.007 0.993 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.251 0.749 35 H 0.249 0.751 36 H 0.228 0.772 37 H 0.214 0.786 38 H 0.246 0.754 39 H 0.028 0.972 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.963 -20.963 16.123 26.908 hybrid contribution -0.157 1.822 -1.268 2.225 sum 4.806 -19.141 14.855 24.701 Atomic orbital electron populations 1.70207 1.06952 1.26002 1.55153 1.25880 0.95971 1.01841 1.01048 0.85219 0.78131 0.79210 0.77578 1.21113 1.18802 1.22686 1.19584 0.93216 0.85465 1.41026 0.90402 1.44249 1.35570 1.02158 1.50851 1.20456 0.87820 0.97733 0.88684 1.22253 1.01320 0.94458 0.98893 1.20631 0.97326 0.88469 0.86891 0.92693 1.45541 1.09842 1.43885 1.35178 1.17555 0.84252 0.79211 0.81242 1.90780 1.24445 1.66440 1.65823 1.20288 0.94437 1.09783 1.05705 1.24767 0.99399 0.92549 0.91040 1.77176 0.89842 1.20971 1.22216 1.49912 1.06672 1.36012 1.29046 1.21663 0.85149 0.76166 0.80171 1.93145 1.71854 1.79292 1.72418 1.93144 1.81502 1.60881 1.81154 1.23300 1.00483 0.89377 0.87824 1.22290 0.95700 0.83208 0.94558 0.90410 1.86462 1.52151 1.28322 1.70786 1.21711 0.98674 0.86233 0.94392 0.94091 0.91972 0.99271 0.92495 0.90943 0.74898 0.75051 0.77220 0.78637 0.75368 0.97174 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.50 11.19 21.65 0.24 -55.26 16 2 C -0.05 -2.84 4.91 84.86 0.42 -2.42 16 3 Si 0.97 43.65 29.59 68.60 2.03 45.67 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 6 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 7 C -0.26 -13.82 9.58 84.03 0.81 -13.01 16 8 H 0.08 3.86 7.89 -2.91 -0.02 3.83 16 9 N -0.60 -29.33 3.00 -699.93 -2.10 -31.43 16 10 C 0.18 8.84 5.28 86.22 0.46 9.29 16 11 C -0.13 -5.03 5.63 30.53 0.17 -4.86 16 12 C 0.17 5.96 2.12 45.02 0.10 6.05 16 13 H 0.05 2.31 7.58 -2.39 -0.02 2.29 16 14 N -0.69 -18.89 4.91 -445.66 -2.19 -21.08 16 15 C 0.59 17.88 7.78 86.66 0.67 18.55 16 16 O -0.59 -23.57 16.56 -4.03 -0.07 -23.64 16 17 C -0.29 -6.57 6.13 -20.15 -0.12 -6.69 16 18 C 0.11 1.85 11.50 85.65 0.99 2.83 16 19 N -0.28 -4.90 12.50 -56.27 -0.70 -5.60 16 20 N -0.43 -7.24 3.84 -363.02 -1.40 -8.63 16 21 C 0.50 5.33 6.37 127.77 0.81 6.14 16 22 F -0.19 -2.53 17.47 44.97 0.79 -1.74 16 23 F -0.19 -2.49 17.47 44.97 0.79 -1.71 16 24 C 0.14 2.88 11.19 84.28 0.94 3.83 16 25 C 0.10 3.17 3.14 30.67 0.10 3.26 16 26 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 27 O -0.57 -14.54 13.16 -148.98 -1.96 -16.50 16 28 C 0.12 4.53 6.14 86.36 0.53 5.06 16 29 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.06 3.43 6.04 -2.38 -0.01 3.42 16 31 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 32 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.41 8.03 7.56 -92.70 -0.70 7.33 16 35 H 0.23 1.93 7.50 -2.91 -0.02 1.91 16 36 H 0.21 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.20 3.80 8.06 -2.91 -0.02 3.78 16 38 H 0.40 6.43 9.08 -74.06 -0.67 5.76 16 39 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 40 H 0.08 2.70 7.93 -2.39 -0.02 2.68 16 Total: -1.00 -76.43 349.59 1.03 -75.40 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -0.26 Total: 16.48 kcal Atomic # 6 Polarization: 22.17 SS G_CDS: 5.86 Total: 28.04 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -6.14 Total: -122.01 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -2.03 Total: -40.14 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 1.57 Total: -3.45 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -76.43 1.03 -75.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090680621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.059 kcal (2) G-P(sol) polarization free energy of solvation -76.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds