Wall clock time and date at job start Tue Mar 31 2020 05:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99589 * 2 1 4 4 C 1.50706 * 109.46944 * 179.97438 * 3 2 1 5 5 N 1.29944 * 126.28338 * 89.97381 * 4 3 2 6 6 O 1.21302 * 110.24781 * 180.02562 * 5 4 3 7 7 C 1.33642 * 109.81314 * 0.02562 * 6 5 4 8 8 C 1.50697 * 126.54912 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.46943 * 270.01988 * 8 7 6 10 10 C 1.46905 * 110.99870 * 180.02562 * 9 8 7 11 11 C 1.52993 * 109.47039 * 180.02562 * 10 9 8 12 12 N 1.46502 * 109.47345 * 180.02562 * 11 10 9 13 13 C 1.34769 * 120.00247 * 179.97438 * 12 11 10 14 14 O 1.21284 * 120.00137 * 359.97438 * 13 12 11 15 15 C 1.50706 * 120.00180 * 180.02562 * 13 12 11 16 16 S 1.81003 * 109.47254 * 179.97438 * 15 13 12 17 17 C 1.76199 * 99.99856 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99948 * 0.02562 * 17 16 15 19 19 C 1.38791 * 120.00023 * 179.97438 * 17 16 15 20 20 N 1.31635 * 120.00359 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00303 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46965 * 59.99757 * 21 19 17 23 23 H 1.48494 * 109.47215 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46788 * 299.99987 * 21 19 17 25 25 N 1.31126 * 106.89687 * 0.22067 * 7 6 5 26 26 H 1.08995 * 109.47623 * 299.99919 * 1 2 3 27 27 H 1.09000 * 109.46634 * 60.00194 * 1 2 3 28 28 H 1.09005 * 109.46886 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46927 * 59.99974 * 3 2 1 30 30 H 1.08995 * 109.47512 * 299.99347 * 3 2 1 31 31 H 1.09004 * 109.46763 * 150.02430 * 8 7 6 32 32 H 1.08995 * 109.47483 * 30.02086 * 8 7 6 33 33 H 1.00901 * 111.00067 * 303.95401 * 9 8 7 34 34 H 1.09001 * 109.46798 * 300.00327 * 10 9 8 35 35 H 1.08998 * 109.46961 * 60.00043 * 10 9 8 36 36 H 1.09001 * 109.47393 * 299.99719 * 11 10 9 37 37 H 1.08998 * 109.47408 * 60.00073 * 11 10 9 38 38 H 0.97001 * 119.99761 * 0.02562 * 12 11 10 39 39 H 1.09002 * 109.46654 * 299.99478 * 15 13 12 40 40 H 1.08998 * 109.47154 * 59.99513 * 15 13 12 41 41 H 0.96995 * 120.00491 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2795 1.1252 -1.0465 6 8 5.4415 1.0329 -0.7109 7 6 5.5287 1.0259 0.6226 8 6 6.7915 0.9250 1.4389 9 7 7.0917 -0.4884 1.7036 10 6 8.3188 -0.6258 2.4995 11 6 8.5985 -2.1083 2.7537 12 7 9.8219 -2.2453 3.5480 13 6 10.2660 -3.4693 3.8957 14 8 9.6527 -4.4574 3.5515 15 6 11.5242 -3.6102 4.7132 16 16 11.8543 -5.3641 5.0151 17 6 13.3352 -5.2382 5.9616 18 1 13.7542 -4.2675 6.1822 19 6 13.9626 -6.3863 6.4245 20 7 13.4512 -7.5694 6.1570 21 14 15.5323 -6.2529 7.4286 22 1 15.2664 -5.4677 8.6606 23 1 15.9995 -7.6126 7.7999 24 1 16.5782 -5.5721 6.6238 25 7 4.3052 1.1182 1.0850 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 6.6561 1.4509 2.3840 32 1 7.6173 1.3749 0.8878 33 1 6.3142 -0.9445 2.1568 34 1 9.1554 -0.1865 1.9561 35 1 8.1937 -0.1107 3.4519 36 1 7.7620 -2.5479 3.2969 37 1 8.7238 -2.6230 1.8011 38 1 10.3118 -1.4550 3.8242 39 1 12.3612 -3.1708 4.1705 40 1 11.3982 -3.0954 5.6656 41 1 13.8895 -8.3718 6.4808 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123786996.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:11 Heat of formation + Delta-G solvation = -4.428288 kcal Electronic energy + Delta-G solvation = -23677.930699 eV Core-core repulsion = 19723.237416 eV Total energy + Delta-G solvation = -3954.693283 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -46.09526 -39.24086 -38.61480 -37.46986 -36.18029 -34.64635 -33.04504 -32.42467 -30.39213 -29.23093 -28.48403 -26.50812 -25.93989 -25.41049 -23.88783 -22.52744 -21.94231 -20.40209 -18.66704 -18.25291 -17.82938 -16.96030 -16.81096 -16.37753 -16.29541 -16.13018 -16.07429 -15.47860 -15.16158 -14.81066 -14.72768 -14.04822 -13.82086 -13.56955 -13.28432 -13.11622 -12.94639 -12.74573 -12.54203 -12.46611 -12.25829 -11.96187 -11.84675 -11.58327 -11.52784 -11.04430 -11.03530 -10.77094 -10.58008 -10.41380 -9.82578 -9.44465 -9.18542 -9.06252 -8.92644 -8.23792 -6.49883 -6.21064 -3.92013 0.59631 1.51878 2.24794 2.82153 2.94876 3.08709 3.23775 3.24669 3.29084 3.34951 3.55909 3.69651 3.98021 4.20778 4.26427 4.44645 4.47968 4.62395 4.70063 4.76413 4.78053 4.80490 4.90181 5.09648 5.13786 5.13946 5.17092 5.17683 5.42849 5.58828 5.69082 5.80315 5.88989 6.12887 6.18715 6.38325 6.53546 6.64723 7.59338 7.64983 7.66260 8.35199 8.59364 9.23983 10.86280 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.031330 B = 0.001436 C = 0.001395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.511558 B =19498.591730 C =20072.178939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.156 3.844 4 C 0.166 3.834 5 N -0.362 5.362 6 O 0.098 5.902 7 C 0.189 3.811 8 C 0.153 3.847 9 N -0.682 5.682 10 C 0.052 3.948 11 C 0.122 3.878 12 N -0.739 5.739 13 C 0.532 3.468 14 O -0.515 6.515 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 N -0.466 5.466 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.355 0.645 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.398 0.602 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.471 24.440 -10.892 33.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C 0.078 3.922 4 C -0.107 4.107 5 N -0.067 5.067 6 O 0.035 5.965 7 C -0.032 4.032 8 C 0.022 3.978 9 N -0.316 5.316 10 C -0.077 4.077 11 C -0.003 4.003 12 N -0.395 5.395 13 C 0.318 3.682 14 O -0.389 6.389 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.199 1.199 25 N -0.201 5.201 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.134 0.866 33 H 0.174 0.826 34 H 0.106 0.894 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.232 0.768 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.756 22.356 -12.567 33.631 hybrid contribution 1.512 2.071 2.046 3.280 sum -20.244 24.427 -10.521 33.424 Atomic orbital electron populations 1.22836 0.79396 1.03676 1.00452 1.87960 1.20797 1.25885 1.95550 1.20394 0.82433 0.86424 1.02965 1.25316 0.99204 1.02433 0.83715 1.74675 0.89707 1.18505 1.23806 1.85340 1.22217 1.64119 1.24818 1.28596 0.96462 0.95933 0.82221 1.20348 0.88784 0.91749 0.96895 1.60277 1.07365 1.11387 1.52599 1.22127 0.92490 0.97007 0.96112 1.21110 0.87730 0.94704 0.96763 1.45867 1.27726 1.08746 1.57118 1.20305 0.85988 0.82412 0.79464 1.90719 1.57607 1.37133 1.53406 1.23529 0.96897 1.08433 1.01514 1.85426 1.32776 0.95514 1.69612 1.22828 1.11027 0.95566 1.39098 0.90964 1.24987 0.98050 0.94475 0.96008 1.70007 1.39217 0.97556 1.43489 0.86226 0.81831 0.77465 0.79985 1.19960 1.20810 1.19931 1.71872 0.99786 1.19062 1.29363 0.93380 0.93528 0.88822 0.89687 0.90174 0.89776 0.86644 0.82576 0.89446 0.93621 0.91602 0.90414 0.76837 0.89142 0.89203 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.46 10.69 -35.23 -0.38 -3.83 16 3 C 0.16 1.14 6.56 36.01 0.24 1.38 16 4 C 0.17 1.67 7.85 -156.37 -1.23 0.44 16 5 N -0.36 -3.94 12.16 30.90 0.38 -3.57 16 6 O 0.10 0.95 11.31 18.10 0.20 1.16 16 7 C 0.19 1.54 8.03 -13.06 -0.10 1.43 16 8 C 0.15 0.75 6.31 -4.98 -0.03 0.72 16 9 N -0.68 -4.54 6.49 -115.06 -0.75 -5.29 16 10 C 0.05 0.32 5.80 -3.82 -0.02 0.30 16 11 C 0.12 1.27 5.93 -4.04 -0.02 1.25 16 12 N -0.74 -8.99 5.56 -60.30 -0.33 -9.33 16 13 C 0.53 9.65 7.85 -10.99 -0.09 9.56 16 14 O -0.51 -11.63 15.86 5.55 0.09 -11.55 16 15 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 16 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 17 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 18 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 21 Si 0.92 21.25 29.55 -169.99 -5.02 16.22 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 N -0.47 -4.56 11.55 -9.87 -0.11 -4.68 16 26 H 0.05 0.17 8.14 -51.93 -0.42 -0.26 16 27 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.12 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.36 2.54 8.72 -39.29 -0.34 2.20 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.40 3.48 8.47 -40.82 -0.35 3.13 16 39 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 40 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 377.92 15.07 5.70 5.70 Total: -1.00 -37.68 377.92 -7.17 -44.85 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -5.73 Total: -1.18 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 0.27 Total: 0.69 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -0.09 Total: -48.23 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.08 Total: -14.22 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.68 -7.17 -44.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123786996.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.421 kcal (2) G-P(sol) polarization free energy of solvation -37.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds