Wall clock time and date at job start Tue Mar 31 2020 05:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99589 * 2 1 4 4 C 1.50706 * 109.46944 * 179.97438 * 3 2 1 5 5 N 1.29944 * 126.28338 * 89.97381 * 4 3 2 6 6 O 1.21302 * 110.24781 * 180.02562 * 5 4 3 7 7 C 1.33642 * 109.81314 * 0.02562 * 6 5 4 8 8 C 1.50697 * 126.54912 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.46943 * 270.01988 * 8 7 6 10 10 C 1.46905 * 110.99870 * 180.02562 * 9 8 7 11 11 C 1.52993 * 109.47039 * 180.02562 * 10 9 8 12 12 N 1.46502 * 109.47345 * 180.02562 * 11 10 9 13 13 C 1.34769 * 120.00247 * 179.97438 * 12 11 10 14 14 O 1.21284 * 120.00137 * 359.97438 * 13 12 11 15 15 C 1.50706 * 120.00180 * 180.02562 * 13 12 11 16 16 S 1.81003 * 109.47254 * 179.97438 * 15 13 12 17 17 C 1.76199 * 99.99856 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99948 * 0.02562 * 17 16 15 19 19 C 1.38791 * 120.00023 * 179.97438 * 17 16 15 20 20 N 1.31635 * 120.00359 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00303 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46965 * 59.99757 * 21 19 17 23 23 H 1.48494 * 109.47215 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46788 * 299.99987 * 21 19 17 25 25 N 1.31126 * 106.89687 * 0.22067 * 7 6 5 26 26 H 1.08995 * 109.47623 * 299.99919 * 1 2 3 27 27 H 1.09000 * 109.46634 * 60.00194 * 1 2 3 28 28 H 1.09005 * 109.46886 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46927 * 59.99974 * 3 2 1 30 30 H 1.08995 * 109.47512 * 299.99347 * 3 2 1 31 31 H 1.09004 * 109.46763 * 150.02430 * 8 7 6 32 32 H 1.08995 * 109.47483 * 30.02086 * 8 7 6 33 33 H 1.00901 * 111.00067 * 303.95401 * 9 8 7 34 34 H 1.09001 * 109.46798 * 300.00327 * 10 9 8 35 35 H 1.08998 * 109.46961 * 60.00043 * 10 9 8 36 36 H 1.09001 * 109.47393 * 299.99719 * 11 10 9 37 37 H 1.08998 * 109.47408 * 60.00073 * 11 10 9 38 38 H 0.97001 * 119.99761 * 0.02562 * 12 11 10 39 39 H 1.09002 * 109.46654 * 299.99478 * 15 13 12 40 40 H 1.08998 * 109.47154 * 59.99513 * 15 13 12 41 41 H 0.96995 * 120.00491 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2795 1.1252 -1.0465 6 8 5.4415 1.0329 -0.7109 7 6 5.5287 1.0259 0.6226 8 6 6.7915 0.9250 1.4389 9 7 7.0917 -0.4884 1.7036 10 6 8.3188 -0.6258 2.4995 11 6 8.5985 -2.1083 2.7537 12 7 9.8219 -2.2453 3.5480 13 6 10.2660 -3.4693 3.8957 14 8 9.6527 -4.4574 3.5515 15 6 11.5242 -3.6102 4.7132 16 16 11.8543 -5.3641 5.0151 17 6 13.3352 -5.2382 5.9616 18 1 13.7542 -4.2675 6.1822 19 6 13.9626 -6.3863 6.4245 20 7 13.4512 -7.5694 6.1570 21 14 15.5323 -6.2529 7.4286 22 1 15.2664 -5.4677 8.6606 23 1 15.9995 -7.6126 7.7999 24 1 16.5782 -5.5721 6.6238 25 7 4.3052 1.1182 1.0850 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 6.6561 1.4509 2.3840 32 1 7.6173 1.3749 0.8878 33 1 6.3142 -0.9445 2.1568 34 1 9.1554 -0.1865 1.9561 35 1 8.1937 -0.1107 3.4519 36 1 7.7620 -2.5479 3.2969 37 1 8.7238 -2.6230 1.8011 38 1 10.3118 -1.4550 3.8242 39 1 12.3612 -3.1708 4.1705 40 1 11.3982 -3.0954 5.6656 41 1 13.8895 -8.3718 6.4808 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123786996.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:10 Heat of formation + Delta-G solvation = -37.814293 kcal Electronic energy + Delta-G solvation = -23679.378425 eV Core-core repulsion = 19723.237416 eV Total energy + Delta-G solvation = -3956.141009 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -46.78588 -40.59463 -39.15207 -38.10808 -36.87013 -35.68019 -34.56088 -33.81482 -31.58746 -29.83732 -29.43770 -27.66247 -26.95991 -26.58048 -24.55341 -23.19247 -22.56034 -21.75560 -19.83240 -19.36256 -18.85774 -17.83714 -17.49663 -17.43629 -17.09273 -16.92138 -16.85342 -16.65407 -16.33787 -16.02590 -15.97476 -15.19137 -14.93701 -14.65230 -14.30951 -14.10054 -13.77907 -13.53571 -13.47224 -13.22138 -13.14633 -13.06530 -12.84587 -12.69747 -12.58487 -12.44691 -12.34472 -12.26337 -11.72618 -11.27419 -11.10589 -10.96772 -10.89151 -10.24746 -10.10637 -9.63259 -8.64575 -8.32151 -6.10530 -0.05282 0.86161 1.29037 1.46012 1.48952 1.58066 1.64329 1.69742 2.21727 2.29651 2.31996 2.77014 3.02020 3.15574 3.24404 3.39538 3.73229 3.85147 4.01115 4.06418 4.15528 4.19359 4.35186 4.38104 4.39053 4.43574 4.51254 4.54886 4.55153 4.63819 4.81065 4.81634 4.94748 4.96321 5.41571 5.43953 5.72061 5.94110 6.08744 6.21863 6.54649 6.98608 7.09032 7.28861 8.76788 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.031330 B = 0.001436 C = 0.001395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.511558 B =19498.591730 C =20072.178939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.418 6.418 3 C 0.153 3.847 4 C 0.156 3.844 5 N -0.387 5.387 6 O 0.089 5.911 7 C 0.197 3.803 8 C 0.156 3.844 9 N -0.697 5.697 10 C 0.066 3.934 11 C 0.120 3.880 12 N -0.708 5.708 13 C 0.532 3.468 14 O -0.569 6.569 15 C -0.128 4.128 16 S -0.157 6.157 17 C -0.546 4.546 18 H 0.085 0.915 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.261 1.261 23 H -0.281 1.281 24 H -0.261 1.261 25 N -0.486 5.486 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.142 0.858 33 H 0.350 0.650 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.420 0.580 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.637 27.534 -10.121 35.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.337 6.337 3 C 0.075 3.925 4 C -0.117 4.117 5 N -0.094 5.094 6 O 0.027 5.973 7 C -0.024 4.024 8 C 0.026 3.974 9 N -0.331 5.331 10 C -0.062 4.062 11 C -0.004 4.004 12 N -0.363 5.363 13 C 0.318 3.682 14 O -0.447 6.447 15 C -0.279 4.279 16 S 0.070 5.930 17 C -0.694 4.694 18 H 0.103 0.897 19 C -0.191 4.191 20 N -0.549 5.549 21 Si 0.820 3.180 22 H -0.186 1.186 23 H -0.206 1.206 24 H -0.186 1.186 25 N -0.221 5.221 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.159 0.841 33 H 0.168 0.832 34 H 0.126 0.874 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.258 0.742 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.916 25.533 -11.800 35.052 hybrid contribution 1.150 1.199 1.753 2.416 sum -19.766 26.733 -10.046 34.731 Atomic orbital electron populations 1.23028 0.77552 1.04391 1.01876 1.87900 1.22938 1.26993 1.95838 1.20621 0.81050 0.86185 1.04609 1.25879 1.00441 1.01726 0.83610 1.74658 0.90244 1.19856 1.24686 1.85300 1.21890 1.64427 1.25654 1.29270 0.97131 0.94202 0.81813 1.20625 0.88151 0.90935 0.97669 1.60233 1.07346 1.12619 1.52892 1.21999 0.92970 0.93630 0.97623 1.21200 0.86179 0.97887 0.95127 1.45525 1.27842 1.07507 1.55465 1.20089 0.85353 0.83494 0.79249 1.90709 1.59005 1.39328 1.55675 1.23367 0.98611 1.02592 1.03366 1.85641 1.33676 1.03446 1.70244 1.23185 1.10974 0.96324 1.38937 0.89713 1.26131 1.01951 0.93906 0.97151 1.70184 1.41174 0.98523 1.44998 0.85003 0.76899 0.77689 0.78396 1.18604 1.20571 1.18588 1.71886 1.00507 1.20075 1.29620 0.91949 0.92085 0.88541 0.87937 0.88560 0.87571 0.84055 0.83179 0.87443 0.91297 0.92842 0.92383 0.74243 0.86909 0.86927 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.42 -7.42 10.69 -148.98 -1.59 -9.01 16 3 C 0.15 2.15 6.56 71.24 0.47 2.61 16 4 C 0.16 3.09 7.85 138.46 1.09 4.18 16 5 N -0.39 -8.43 12.16 -60.32 -0.73 -9.16 16 6 O 0.09 1.67 11.31 74.84 0.85 2.52 16 7 C 0.20 2.94 8.03 88.38 0.71 3.65 16 8 C 0.16 1.08 6.31 85.56 0.54 1.62 16 9 N -0.70 -7.66 6.49 -517.93 -3.36 -11.03 16 10 C 0.07 0.60 5.80 86.30 0.50 1.10 16 11 C 0.12 2.33 5.93 86.38 0.51 2.84 16 12 N -0.71 -15.54 5.56 -463.07 -2.57 -18.11 16 13 C 0.53 18.86 7.85 87.66 0.69 19.55 16 14 O -0.57 -26.30 15.86 -3.04 -0.05 -26.35 16 15 C -0.13 -4.86 6.16 71.24 0.44 -4.42 16 16 S -0.16 -8.67 20.57 -56.49 -1.16 -9.83 16 17 C -0.55 -30.86 9.50 67.95 0.65 -30.22 16 18 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 19 C 0.01 0.75 5.49 84.85 0.47 1.22 16 20 N -0.91 -56.04 13.22 21.65 0.29 -55.75 16 21 Si 1.00 43.11 29.55 68.60 2.03 45.14 16 22 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 25 N -0.49 -9.14 11.55 -303.22 -3.50 -12.64 16 26 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.14 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.35 4.52 8.72 -89.69 -0.78 3.73 16 34 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.42 5.66 8.47 -92.71 -0.79 4.87 16 39 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 40 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 41 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -86.12 377.92 -3.00 -89.12 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -0.49 Total: 11.48 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 7.30 Total: 3.62 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -9.88 Total: -106.69 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -0.79 Total: -32.84 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -86.12 -3.00 -89.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123786996.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.311 kcal (2) G-P(sol) polarization free energy of solvation -86.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds