Wall clock time and date at job start Tue Mar 31 2020 04:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86794 * 119.99844 * 2 1 4 4 H 1.48499 * 109.47266 * 239.99571 * 3 2 1 5 5 H 1.48500 * 109.47294 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47073 * 119.99775 * 3 2 1 7 7 C 1.38800 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99694 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99809 * 0.02562 * 7 2 1 10 10 C 1.81009 * 99.99715 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46729 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00489 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99425 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99685 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46774 * 179.97438 * 14 13 11 16 16 N 1.46900 * 109.46848 * 179.97438 * 15 14 13 17 17 C 1.46900 * 111.00199 * 179.97438 * 16 15 14 18 18 C 1.52998 * 109.47315 * 180.02562 * 17 16 15 19 19 N 1.46504 * 109.47172 * 179.97438 * 18 17 16 20 20 C 1.34771 * 124.17359 * 89.99722 * 19 18 17 21 21 O 1.21225 * 127.16028 * 0.06992 * 20 19 18 22 22 C 1.51585 * 105.68254 * 180.02562 * 20 19 18 23 23 N 1.47317 * 103.59313 * 359.97438 * 22 20 19 24 24 C 1.33785 * 124.17976 * 270.30611 * 19 18 17 25 25 O 1.21542 * 123.77022 * 359.97438 * 24 19 18 26 26 H 0.97001 * 120.00069 * 0.02562 * 1 2 3 27 27 H 1.08990 * 109.46929 * 60.00179 * 10 9 7 28 28 H 1.09004 * 109.46956 * 299.99746 * 10 9 7 29 29 H 0.96997 * 120.00224 * 359.97438 * 13 11 10 30 30 H 1.08992 * 109.47808 * 59.99316 * 14 13 11 31 31 H 1.09004 * 109.46733 * 299.99384 * 14 13 11 32 32 H 1.08999 * 109.47235 * 60.00072 * 15 14 13 33 33 H 1.08996 * 109.46822 * 299.99489 * 15 14 13 34 34 H 1.00905 * 111.00459 * 303.95423 * 16 15 14 35 35 H 1.09000 * 109.47025 * 59.99997 * 17 16 15 36 36 H 1.09003 * 109.46628 * 300.00485 * 17 16 15 37 37 H 1.09000 * 109.47340 * 59.99867 * 18 17 16 38 38 H 1.08998 * 109.46969 * 299.99520 * 18 17 16 39 39 H 1.08998 * 110.59926 * 241.47169 * 22 20 19 40 40 H 1.09003 * 110.73128 * 118.58762 * 22 20 19 41 41 H 0.97001 * 126.68790 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0021 11 6 1.9873 -5.3027 0.0017 12 8 0.7911 -5.5023 0.0009 13 7 2.8441 -6.3431 0.0033 14 6 2.3303 -7.7151 0.0023 15 6 3.5024 -8.6985 0.0038 16 7 2.9873 -10.0742 0.0034 17 6 4.0870 -11.0482 0.0042 18 6 3.5124 -12.4662 0.0031 19 7 4.6091 -13.4376 0.0033 20 6 5.1752 -13.9400 1.1184 21 8 4.8833 -13.6842 2.2668 22 6 6.2521 -14.8924 0.6378 23 7 6.1585 -14.8086 -0.8300 24 6 5.1763 -13.9309 -1.1034 25 8 4.8391 -13.6237 -2.2299 26 1 -0.4850 0.8400 -0.0004 27 1 3.1237 -3.7310 0.8925 28 1 3.1252 -3.7318 -0.8875 29 1 3.8009 -6.1835 0.0043 30 1 1.7233 -7.8752 -0.8886 31 1 1.7202 -7.8751 0.8913 32 1 4.1098 -8.5386 0.8946 33 1 4.1122 -8.5383 -0.8854 34 1 2.3668 -10.2283 0.7841 35 1 4.6990 -10.9045 0.8946 36 1 4.7003 -10.9044 -0.8854 37 1 2.9006 -12.6097 -0.8875 38 1 2.8989 -12.6103 0.8925 39 1 6.0459 -15.9074 0.9775 40 1 7.2350 -14.5673 0.9790 41 1 6.7024 -15.2889 -1.4738 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123798926.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:39 Heat of formation + Delta-G solvation = -73.943353 kcal Electronic energy + Delta-G solvation = -24050.350799 eV Core-core repulsion = 20092.643117 eV Total energy + Delta-G solvation = -3957.707683 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.89773 -39.20031 -39.15570 -37.44612 -36.66938 -35.49455 -34.06398 -32.41482 -30.92116 -29.31367 -28.30182 -26.82188 -25.44830 -23.63959 -23.28803 -22.43359 -20.89466 -20.35271 -18.64167 -17.88227 -17.75924 -17.29507 -16.62670 -16.38062 -16.10942 -15.99345 -15.83820 -15.24179 -14.82565 -14.79361 -14.73310 -14.60402 -14.22595 -14.16837 -13.92358 -13.66337 -13.08774 -12.85078 -12.54285 -12.32919 -11.93915 -11.74912 -11.54420 -11.41917 -11.03324 -11.02737 -10.85706 -10.76043 -10.41007 -10.14465 -9.81385 -9.41518 -9.05162 -8.97308 -8.88462 -8.22594 -6.48618 -6.20143 -3.90846 1.00807 1.54669 2.39059 2.49534 2.97399 3.11427 3.24508 3.26618 3.29975 3.35300 3.58316 4.03874 4.13293 4.21803 4.30150 4.37518 4.46157 4.65889 4.80517 4.82894 4.88056 4.97702 5.14802 5.17397 5.22159 5.32147 5.37334 5.62214 5.76048 5.88931 5.91699 6.11048 6.14903 6.39543 6.41931 6.61080 6.73379 6.85693 7.51442 7.60429 7.69971 8.36260 8.62181 9.24878 10.87218 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.035605 B = 0.001451 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.207535 B =19287.580789 C =19339.028754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.739 5.739 14 C 0.123 3.877 15 C 0.052 3.948 16 N -0.680 5.680 17 C 0.047 3.953 18 C 0.120 3.880 19 N -0.575 5.575 20 C 0.519 3.481 21 O -0.466 6.466 22 C 0.062 3.938 23 N -0.730 5.730 24 C 0.699 3.301 25 O -0.534 6.534 26 H 0.269 0.731 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.397 0.603 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.347 0.653 35 H 0.037 0.963 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.552 -33.311 1.667 37.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.395 5.395 14 C -0.002 4.002 15 C -0.078 4.078 16 N -0.312 5.312 17 C -0.084 4.084 18 C -0.002 4.002 19 N -0.322 5.322 20 C 0.306 3.694 21 O -0.335 6.335 22 C -0.065 4.065 23 N -0.395 5.395 24 C 0.400 3.600 25 O -0.407 6.407 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.231 0.769 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.165 0.835 35 H 0.055 0.945 36 H 0.100 0.900 37 H 0.128 0.872 38 H 0.115 0.885 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 13.842 -33.184 1.028 35.970 hybrid contribution 3.128 1.155 0.696 3.406 sum 16.970 -32.028 1.725 36.287 Atomic orbital electron populations 1.70011 1.05946 1.27564 1.46746 1.24990 0.95027 0.99007 0.94526 0.86221 0.79230 0.81248 0.78775 1.19951 1.20800 1.19964 1.22834 0.94888 0.91700 1.59099 0.90974 1.85407 1.04894 0.96270 1.96722 1.23531 1.06593 0.95337 1.04934 1.20295 0.86494 0.86219 0.75151 1.90708 1.15351 1.85567 1.47337 1.45892 1.09958 1.05417 1.78197 1.21130 0.95589 0.80338 1.03141 1.22092 0.96752 0.87443 1.01490 1.60161 1.18350 1.02078 1.50645 1.22218 0.93668 0.90760 1.01709 1.21629 0.86770 0.85932 1.05847 1.46326 1.35556 1.42209 1.08113 1.20954 0.82662 0.80913 0.84866 1.90857 1.64232 1.60526 1.17903 1.22478 1.00653 1.02032 0.81380 1.45447 1.38982 1.47361 1.07754 1.15894 0.80228 0.79637 0.84276 1.91073 1.65941 1.63372 1.20273 0.92124 0.89229 0.89176 0.76906 0.90510 0.91677 0.94332 0.90079 0.83454 0.94516 0.89997 0.87231 0.88519 0.85753 0.85774 0.71307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -15.40 9.50 30.94 0.29 -15.11 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 11 C 0.53 10.05 7.85 -10.98 -0.09 9.97 16 12 O -0.52 -11.92 15.86 5.56 0.09 -11.84 16 13 N -0.74 -9.85 5.56 -60.29 -0.33 -10.18 16 14 C 0.12 1.43 5.93 -4.04 -0.02 1.40 16 15 C 0.05 0.44 5.80 -3.82 -0.02 0.41 16 16 N -0.68 -5.31 6.50 -113.78 -0.74 -6.05 16 17 C 0.05 0.33 6.01 -3.83 -0.02 0.31 16 18 C 0.12 0.77 5.96 -4.04 -0.02 0.75 16 19 N -0.57 -3.55 2.60 -120.73 -0.31 -3.87 16 20 C 0.52 2.76 8.32 -10.55 -0.09 2.67 16 21 O -0.47 -3.96 17.76 5.60 0.10 -3.86 16 22 C 0.06 0.06 7.97 -4.31 -0.03 0.03 16 23 N -0.73 -1.91 6.58 -65.73 -0.43 -2.34 16 24 C 0.70 4.80 8.62 -88.02 -0.76 4.04 16 25 O -0.53 -5.87 17.48 5.33 0.09 -5.78 16 26 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 28 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 29 H 0.40 4.04 8.47 -40.82 -0.35 3.70 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.35 2.36 8.73 -39.29 -0.34 2.02 16 35 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.11 0.78 7.87 -51.93 -0.41 0.38 16 38 H 0.10 0.54 8.00 -51.93 -0.42 0.13 16 39 H 0.12 -0.14 8.14 -51.93 -0.42 -0.57 16 40 H 0.12 -0.12 8.14 -51.93 -0.42 -0.54 16 41 H 0.44 0.21 8.96 -40.82 -0.37 -0.16 16 LS Contribution 374.20 15.07 5.64 5.64 Total: -1.00 -39.29 374.20 -8.69 -47.99 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -5.65 Total: -0.37 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -0.64 Total: 3.61 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -1.09 Total: -48.02 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: 0.28 Total: -21.47 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -39.29 -8.69 -47.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123798926.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.954 kcal (2) G-P(sol) polarization free energy of solvation -39.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds