Wall clock time and date at job start Tue Mar 31 2020 06:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86793 * 119.99900 * 2 1 4 4 H 1.48494 * 109.47120 * 269.99989 * 3 2 1 5 5 H 1.48507 * 109.47145 * 29.99998 * 3 2 1 6 6 H 1.48498 * 109.47161 * 150.00175 * 3 2 1 7 7 C 1.38812 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99824 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99952 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99993 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47433 * 185.10453 * 10 9 7 12 12 C 1.53001 * 115.56225 * 280.47701 * 11 10 9 13 13 C 1.52995 * 109.46896 * 320.02217 * 12 11 10 14 14 N 1.46503 * 109.46791 * 185.89512 * 13 12 11 15 15 C 1.34775 * 119.99993 * 180.02562 * 14 13 12 16 16 O 1.21281 * 120.00012 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00041 * 180.02562 * 15 14 13 18 18 H 1.09000 * 110.28176 * 337.11060 * 17 15 14 19 19 C 1.54160 * 110.31865 * 214.99590 * 17 15 14 20 20 C 1.53872 * 108.70708 * 213.18803 * 19 17 15 21 21 C 1.55048 * 106.62312 * 47.18076 * 20 19 17 22 22 S 1.82918 * 110.32006 * 99.33322 * 17 15 14 23 23 O 1.42097 * 109.35523 * 234.42375 * 22 17 15 24 24 O 1.42099 * 109.35330 * 7.62879 * 22 17 15 25 25 C 1.53004 * 117.49511 * 66.16512 * 11 10 9 26 26 C 1.52997 * 60.00113 * 107.49126 * 25 11 10 27 27 H 0.96992 * 119.99701 * 359.97438 * 1 2 3 28 28 H 0.97006 * 120.00002 * 359.97438 * 9 7 2 29 29 H 1.09010 * 109.46909 * 65.10762 * 10 9 7 30 30 H 1.08997 * 109.47692 * 305.11063 * 10 9 7 31 31 H 1.09002 * 109.46859 * 80.02447 * 12 11 10 32 32 H 1.08996 * 109.46921 * 200.02010 * 12 11 10 33 33 H 1.08993 * 109.47187 * 305.89225 * 13 12 11 34 34 H 1.08996 * 109.47320 * 65.89830 * 13 12 11 35 35 H 0.97001 * 119.99889 * 359.97438 * 14 13 12 36 36 H 1.09004 * 109.64765 * 333.04461 * 19 17 15 37 37 H 1.09005 * 109.64910 * 93.33613 * 19 17 15 38 38 H 1.09000 * 110.02901 * 166.47235 * 20 19 17 39 39 H 1.08998 * 110.02904 * 287.84668 * 20 19 17 40 40 H 1.09002 * 110.78985 * 75.83912 * 21 20 19 41 41 H 1.09000 * 110.79340 * 199.10625 * 21 20 19 42 42 H 1.09000 * 117.49596 * 359.97438 * 25 11 10 43 43 H 1.09004 * 117.49469 * 214.98160 * 25 11 10 44 44 H 1.08999 * 117.50051 * 107.48633 * 26 25 11 45 45 H 1.09005 * 117.49766 * 252.51586 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0689 -4.8169 -0.1278 12 6 0.3470 -5.2146 1.1612 13 6 1.3278 -5.1558 2.3339 14 7 0.6767 -5.6702 3.5413 15 6 1.3540 -5.7138 4.7057 16 8 2.5027 -5.3277 4.7538 17 6 0.6845 -6.2435 5.9475 18 1 -0.3988 -6.1658 5.8551 19 6 1.1725 -5.4717 7.1895 20 6 1.1998 -6.4343 8.3896 21 6 1.9054 -7.7272 7.9053 22 16 1.1763 -7.9804 6.2428 23 8 0.0119 -8.7867 6.3571 24 8 2.2026 -8.3411 5.3285 25 6 0.2916 -4.9405 -1.4399 26 6 1.4119 -5.9316 -1.1182 27 1 -0.4849 0.8400 0.0004 28 1 0.3556 -2.3881 0.0005 29 1 2.6144 -3.7551 0.9328 30 1 2.7517 -3.6760 -0.8401 31 1 -0.4782 -4.5260 1.3428 32 1 -0.0409 -6.2284 1.0624 33 1 2.2033 -5.7638 2.1062 34 1 1.6354 -4.1232 2.4989 35 1 -0.2422 -5.9786 3.5029 36 1 2.1747 -5.0826 7.0089 37 1 0.4929 -4.6453 7.3980 38 1 1.7595 -5.9894 9.2124 39 1 0.1828 -6.6608 8.7097 40 1 2.9829 -7.5774 7.8365 41 1 1.6740 -8.5643 8.5640 42 1 0.4847 -4.1951 -2.2113 43 1 -0.7342 -5.3052 -1.3847 44 1 1.1233 -6.9482 -0.8513 45 1 2.3425 -5.8384 -1.6782 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168255713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:14 Heat of formation + Delta-G solvation = -72.488132 kcal Electronic energy + Delta-G solvation = -26494.246479 eV Core-core repulsion = 22640.142243 eV Total energy + Delta-G solvation = -3854.104236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.03821 -38.31410 -37.45625 -36.62865 -36.21250 -34.92678 -33.86691 -31.40395 -30.71710 -29.65436 -26.28942 -25.75074 -23.47818 -22.77454 -21.98343 -21.79749 -20.95484 -19.32792 -18.57677 -17.72904 -17.50439 -16.98235 -16.72945 -16.12215 -15.64130 -15.39024 -15.04811 -14.76622 -14.50870 -14.34005 -14.24136 -13.92331 -13.54811 -13.11436 -12.93266 -12.71819 -12.58393 -12.51330 -12.40281 -12.34977 -12.15930 -11.89589 -11.48396 -11.45410 -11.21244 -11.12392 -10.93645 -10.82721 -10.74027 -10.57551 -10.17810 -10.03260 -9.86654 -9.67726 -9.27238 -9.08673 -8.82367 -6.87141 -5.73904 -3.01463 -0.49815 1.98177 2.49378 2.79101 3.16640 3.45312 3.50682 3.52331 3.64254 3.85039 4.04621 4.09491 4.19849 4.29919 4.48977 4.64222 4.70430 4.92918 4.98435 5.07725 5.09483 5.20709 5.29968 5.34076 5.39979 5.51129 5.59450 5.63369 5.73685 5.80068 5.94828 6.15420 6.20076 6.27284 6.37251 6.42680 6.47528 6.54868 6.79166 6.85912 7.30096 7.73382 8.00190 8.45360 9.57055 10.15527 10.51419 11.48964 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014279 B = 0.002887 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.514520 B = 9696.672295 C =11048.516449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.182 3.818 11 C -0.124 4.124 12 C -0.087 4.087 13 C 0.118 3.882 14 N -0.720 5.720 15 C 0.538 3.462 16 O -0.511 6.511 17 C -0.593 4.593 18 H 0.159 0.841 19 C -0.106 4.106 20 C -0.119 4.119 21 C -0.584 4.584 22 S 2.398 3.602 23 O -0.929 6.929 24 O -0.916 6.916 25 C -0.161 4.161 26 C -0.177 4.177 27 H 0.254 0.746 28 H 0.385 0.615 29 H 0.026 0.974 30 H 0.023 0.977 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.399 0.601 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.582 -17.890 15.703 23.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.371 5.371 10 C 0.055 3.945 11 C -0.125 4.125 12 C -0.125 4.125 13 C -0.005 4.005 14 N -0.371 5.371 15 C 0.320 3.680 16 O -0.386 6.386 17 C -0.702 4.702 18 H 0.177 0.823 19 C -0.144 4.144 20 C -0.157 4.157 21 C -0.715 4.715 22 S 2.578 3.422 23 O -0.926 6.926 24 O -0.913 6.913 25 C -0.198 4.198 26 C -0.214 4.214 27 H 0.064 0.936 28 H 0.218 0.782 29 H 0.044 0.956 30 H 0.040 0.960 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.233 0.767 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.107 0.893 40 H 0.162 0.838 41 H 0.158 0.842 42 H 0.117 0.883 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.701 -18.267 15.145 23.739 hybrid contribution -0.442 1.554 0.400 1.664 sum -1.143 -16.713 15.545 22.854 Atomic orbital electron populations 1.69665 1.05051 1.25487 1.58086 1.24709 0.95508 0.97576 1.03221 0.86207 0.78710 0.83936 0.77473 1.21806 1.21850 1.20764 1.19251 0.91046 0.84201 1.42257 0.91255 1.42300 1.05879 0.99597 1.89321 1.20304 0.91886 0.84095 0.98213 1.21569 1.02063 0.98764 0.90071 1.21221 0.97899 1.01057 0.92332 1.21642 0.95845 1.00965 0.82012 1.46009 1.16728 1.65017 1.09372 1.18895 0.86418 0.79647 0.83004 1.90755 1.16688 1.46585 1.84580 1.30664 1.11692 1.25391 1.02499 0.82315 1.22000 1.05406 0.98737 0.88281 1.22236 1.01820 0.92247 0.99436 1.30633 1.12463 1.07041 1.21348 1.09169 0.76636 0.77043 0.79391 1.93637 1.48762 1.63495 1.86667 1.93669 1.56917 1.80283 1.60457 1.22885 0.95917 1.01915 0.99067 1.23086 1.00340 0.94438 1.03547 0.93647 0.78173 0.95598 0.95963 0.90488 0.91798 0.90877 0.89337 0.76707 0.87730 0.88313 0.87831 0.89292 0.83849 0.84170 0.88260 0.89395 0.89307 0.88943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.24 5.57 -59.91 -0.33 -18.58 16 10 C 0.18 3.71 5.82 -4.04 -0.02 3.68 16 11 C -0.12 -1.99 1.81 -154.50 -0.28 -2.27 16 12 C -0.09 -1.22 5.46 -26.73 -0.15 -1.37 16 13 C 0.12 1.77 4.62 -4.04 -0.02 1.75 16 14 N -0.72 -9.00 5.56 -60.30 -0.33 -9.33 16 15 C 0.54 7.13 6.30 -10.98 -0.07 7.06 16 16 O -0.51 -8.72 15.85 5.56 0.09 -8.63 16 17 C -0.59 -5.02 3.60 -27.28 -0.10 -5.12 16 18 H 0.16 0.84 8.11 -51.93 -0.42 0.42 16 19 C -0.11 -0.71 5.91 -25.67 -0.15 -0.87 16 20 C -0.12 -0.51 6.48 -25.19 -0.16 -0.67 16 21 C -0.58 -3.03 7.31 38.24 0.28 -2.75 16 22 S 2.40 21.54 5.95 -107.50 -0.64 20.91 16 23 O -0.93 -10.23 18.15 -57.71 -1.05 -11.27 16 24 O -0.92 -12.31 17.28 -57.71 -1.00 -13.30 16 25 C -0.16 -2.45 9.94 -26.73 -0.27 -2.72 16 26 C -0.18 -2.42 9.82 -26.73 -0.26 -2.69 16 27 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.38 10.11 7.67 -40.82 -0.31 9.80 16 29 H 0.03 0.54 6.01 -51.92 -0.31 0.23 16 30 H 0.02 0.47 7.95 -51.93 -0.41 0.06 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 0.74 7.95 -51.93 -0.41 0.32 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.09 1.61 6.87 -51.93 -0.36 1.25 16 35 H 0.40 3.61 8.45 -40.82 -0.34 3.26 16 36 H 0.10 0.89 6.96 -51.93 -0.36 0.53 16 37 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.14 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.14 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 43 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 44 H 0.09 1.06 8.08 -51.93 -0.42 0.64 16 45 H 0.09 1.26 8.09 -51.93 -0.42 0.84 16 LS Contribution 380.41 15.07 5.73 5.73 Total: -1.00 -37.95 380.41 -10.40 -48.35 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -7.13 Total: 9.21 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -1.45 Total: -13.26 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.06 Total: -55.36 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -1.96 Total: -33.21 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Atomic # 16 Polarization: 21.54 SS G_CDS: -0.64 Total: 20.91 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.95 -10.40 -48.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168255713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.137 kcal (2) G-P(sol) polarization free energy of solvation -37.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds