Wall clock time and date at job start Tue Mar 31 2020 05:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46509 * 109.47089 * 2 1 4 4 N 1.29086 * 125.98039 * 89.97085 * 3 2 1 5 5 N 1.29036 * 110.25802 * 179.89089 * 4 3 2 6 6 C 1.32804 * 108.58558 * 359.95726 * 5 4 3 7 7 C 1.34496 * 125.97908 * 269.97531 * 3 2 1 8 8 C 1.50494 * 129.01628 * 0.42583 * 7 3 2 9 9 C 1.53450 * 108.75375 * 197.67321 * 8 7 3 10 10 N 1.47039 * 109.21461 * 314.86812 * 9 8 7 11 11 S 1.65599 * 120.77999 * 244.28156 * 10 9 8 12 12 O 1.42100 * 106.40369 * 203.54278 * 11 10 9 13 13 O 1.42097 * 106.40208 * 336.46507 * 11 10 9 14 14 C 1.76201 * 107.21700 * 90.00412 * 11 10 9 15 15 H 1.07997 * 120.00186 * 0.02562 * 14 11 10 16 16 C 1.37878 * 120.00141 * 180.02562 * 14 11 10 17 17 N 1.31518 * 119.99721 * 359.97438 * 16 14 11 18 18 Si 1.86793 * 120.00251 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.46906 * 90.00237 * 18 16 14 20 20 H 1.48495 * 109.47238 * 209.99684 * 18 16 14 21 21 H 1.48501 * 109.47172 * 330.00319 * 18 16 14 22 22 C 1.47499 * 118.41935 * 64.31060 * 10 9 8 23 23 H 1.09001 * 109.90140 * 196.28967 * 22 10 9 24 24 C 1.52994 * 109.93729 * 75.11850 * 22 10 9 25 25 O 1.42901 * 109.46911 * 297.26285 * 24 22 10 26 26 C 1.42908 * 114.00117 * 179.97438 * 25 24 22 27 27 H 1.09001 * 109.47539 * 300.00049 * 1 2 3 28 28 H 1.09003 * 109.47193 * 60.00314 * 1 2 3 29 29 H 1.09003 * 109.46938 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47539 * 239.99951 * 2 1 3 31 31 H 1.09003 * 109.47193 * 119.99686 * 2 1 3 32 32 H 1.09000 * 109.58985 * 317.45050 * 8 7 3 33 33 H 1.08998 * 109.59009 * 77.88649 * 8 7 3 34 34 H 1.08996 * 109.51055 * 74.79092 * 9 8 7 35 35 H 1.08997 * 109.50932 * 194.95239 * 9 8 7 36 36 H 0.96998 * 119.99929 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.46903 * 57.25652 * 24 22 10 38 38 H 1.08996 * 109.47308 * 177.26377 * 24 22 10 39 39 H 1.09002 * 109.46795 * 299.99730 * 26 25 24 40 40 H 1.08999 * 109.47065 * 59.99811 * 26 25 24 41 41 H 1.08999 * 109.47131 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2706 2.0965 1.0446 5 7 2.6869 3.2667 0.6949 6 6 2.7121 3.3282 -0.6314 7 6 2.2821 2.1261 -1.0884 8 6 2.1446 1.7615 -2.5420 9 6 2.9666 2.7510 -3.3787 10 7 2.7138 4.1175 -2.8984 11 16 1.9816 5.2370 -3.8745 12 8 2.3704 6.5127 -3.3839 13 8 2.2120 4.8153 -5.2117 14 6 0.2452 5.1082 -3.6044 15 1 -0.1396 4.3859 -2.8997 16 6 -0.6224 5.9296 -4.2926 17 7 -0.1538 6.8095 -5.1504 18 14 -2.4632 5.7926 -4.0068 19 1 -2.8628 6.7074 -2.9074 20 1 -3.1862 6.1663 -5.2489 21 1 -2.8041 4.3954 -3.6369 22 6 3.1286 4.4675 -1.5269 23 1 2.6339 5.3865 -1.2127 24 6 4.6471 4.6461 -1.4706 25 8 5.2846 3.4096 -1.7972 26 6 6.7123 3.4678 -1.7742 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.5176 0.7498 -2.7019 33 1 1.0963 1.8174 -2.8353 34 1 4.0270 2.5198 -3.2779 35 1 2.6739 2.6732 -4.4258 36 1 -0.7641 7.3871 -5.6349 37 1 4.9496 5.4109 -2.1860 38 1 4.9400 4.9518 -0.4662 39 1 7.0573 4.2080 -2.4961 40 1 7.0484 3.7492 -0.7763 41 1 7.1199 2.4904 -2.0323 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192952606.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:09 Heat of formation + Delta-G solvation = -29.197203 kcal Electronic energy + Delta-G solvation = -28273.403118 eV Core-core repulsion = 24317.635774 eV Total energy + Delta-G solvation = -3955.767344 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.11265 -38.27785 -36.36210 -35.57619 -35.30568 -34.01359 -33.11559 -31.99585 -30.79506 -30.19294 -27.54853 -26.14309 -25.79681 -24.56458 -23.38649 -23.11484 -20.58984 -19.98980 -18.54522 -17.62598 -16.80640 -16.64167 -16.20473 -15.88248 -15.73771 -15.21581 -14.91057 -14.85825 -14.50702 -14.11669 -13.96789 -13.57135 -13.23907 -13.02804 -12.87307 -12.53983 -12.15971 -12.04301 -11.96750 -11.90665 -11.65270 -11.50187 -11.31198 -11.23566 -11.14563 -10.95284 -10.62901 -10.45863 -10.34269 -10.30944 -10.11452 -9.79243 -9.43142 -9.26712 -8.98852 -8.54392 -8.33608 -6.72038 -5.34076 1.83370 2.16056 2.46803 2.85480 3.05065 3.11975 3.17291 3.93737 4.03544 4.28365 4.42363 4.50348 4.62354 4.64913 4.86232 4.88600 5.07656 5.25606 5.27852 5.33362 5.41870 5.46577 5.52626 5.62263 5.68556 5.71233 5.74512 5.79639 5.82968 5.88226 5.98140 6.07676 6.09123 6.32634 6.36864 6.52279 6.77506 6.84420 7.30147 7.34993 7.46385 7.95948 8.78618 8.87248 10.21692 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.011415 B = 0.006155 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.227352 B = 4547.870437 C = 6104.697882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.113 3.887 3 N -0.288 5.288 4 N -0.107 5.107 5 N -0.257 5.257 6 C -0.012 4.012 7 C 0.012 3.988 8 C -0.062 4.062 9 C 0.128 3.872 10 N -1.002 6.002 11 S 2.714 3.286 12 O -1.000 7.000 13 O -0.999 6.999 14 C -1.018 5.018 15 H 0.101 0.899 16 C 0.135 3.865 17 N -0.845 5.845 18 Si 0.918 3.082 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.264 1.264 22 C 0.251 3.749 23 H 0.127 0.873 24 C 0.059 3.941 25 O -0.379 6.379 26 C 0.030 3.970 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.291 0.709 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.040 0.960 40 H 0.036 0.964 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.439 -13.614 6.676 16.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.008 4.008 3 N -0.081 5.081 4 N -0.084 5.084 5 N -0.122 5.122 6 C -0.154 4.154 7 C -0.122 4.122 8 C -0.103 4.103 9 C 0.001 3.999 10 N -0.835 5.835 11 S 2.815 3.185 12 O -0.991 6.991 13 O -0.989 6.989 14 C -1.152 5.152 15 H 0.119 0.881 16 C -0.083 4.083 17 N -0.475 5.475 18 Si 0.742 3.258 19 H -0.191 1.191 20 H -0.199 1.199 21 H -0.188 1.188 22 C 0.141 3.859 23 H 0.144 0.856 24 C -0.019 4.019 25 O -0.298 6.298 26 C -0.066 4.066 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.803 -13.040 7.479 16.114 hybrid contribution -1.459 -0.329 -0.478 1.570 sum 4.344 -13.369 7.001 15.704 Atomic orbital electron populations 1.22167 0.93145 1.03607 1.04033 1.21995 0.96266 0.77205 1.05340 1.46999 1.43324 1.13050 1.04723 1.78460 1.19463 0.99021 1.11470 1.74697 1.15486 1.10358 1.11682 1.21573 1.06112 0.96612 0.91059 1.21627 1.05808 0.92760 0.92023 1.20654 1.02863 1.00237 0.86592 1.21364 1.00300 0.80471 0.97757 1.58484 1.76448 1.24736 1.23861 1.00616 0.75538 0.70839 0.71486 1.93363 1.85174 1.39532 1.81018 1.93356 1.87772 1.82288 1.35487 1.30593 1.17180 1.31070 1.36323 0.88070 1.24725 1.01735 0.91132 0.90753 1.69889 1.38395 1.17836 1.21385 0.86200 0.81311 0.79609 0.78677 1.19148 1.19910 1.18782 1.19052 0.92435 0.94454 0.79942 0.85553 1.22974 0.92211 0.86655 1.00096 1.87915 1.18049 1.33032 1.90819 1.22697 0.82039 1.02039 0.99870 0.91306 0.91248 0.89917 0.88032 0.87873 0.89919 0.89147 0.89443 0.87980 0.89844 0.91675 0.91993 0.94095 0.94492 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 10.24 37.15 0.38 -1.06 16 2 C 0.11 1.02 6.95 -4.04 -0.03 0.99 16 3 N -0.29 -4.15 3.33 -57.24 -0.19 -4.34 16 4 N -0.11 -1.84 13.19 60.35 0.80 -1.04 16 5 N -0.26 -4.88 12.40 33.19 0.41 -4.46 16 6 C -0.01 -0.22 6.03 -83.08 -0.50 -0.73 16 7 C 0.01 0.19 6.80 -82.47 -0.56 -0.37 16 8 C -0.06 -0.87 6.13 -27.75 -0.17 -1.04 16 9 C 0.13 2.12 6.10 -3.52 -0.02 2.10 16 10 N -1.00 -20.22 2.93 -107.13 -0.31 -20.54 16 11 S 2.71 70.28 4.99 -107.50 -0.54 69.74 16 12 O -1.00 -28.33 16.92 -57.17 -0.97 -29.30 16 13 O -1.00 -27.97 16.63 -57.17 -0.95 -28.92 16 14 C -1.02 -27.52 9.75 30.60 0.30 -27.22 16 15 H 0.10 2.55 7.81 -52.49 -0.41 2.14 16 16 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 17 N -0.85 -24.48 13.19 55.43 0.73 -23.75 16 18 Si 0.92 20.45 29.54 -169.99 -5.02 15.43 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 21 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 22 C 0.25 4.74 3.06 -68.50 -0.21 4.53 16 23 H 0.13 2.51 7.44 -51.93 -0.39 2.12 16 24 C 0.06 0.97 5.81 37.15 0.22 1.19 16 25 O -0.38 -5.84 7.76 -35.23 -0.27 -6.11 16 26 C 0.03 0.35 11.01 101.05 1.11 1.47 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.67 7.64 -51.93 -0.40 0.28 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.84 7.79 -51.93 -0.40 0.44 16 33 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.09 1.35 5.98 -51.93 -0.31 1.04 16 35 H 0.10 1.72 6.95 -51.93 -0.36 1.36 16 36 H 0.29 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 352.87 15.07 5.32 5.32 Total: -1.00 -36.54 352.87 -6.21 -42.75 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.63 Total: 1.76 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 0.42 Total: -16.53 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 1.43 Total: -54.13 kcal Atomic # 8 Polarization: -62.14 SS G_CDS: -2.19 Total: -64.33 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 70.28 SS G_CDS: -0.54 Total: 69.74 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.54 -6.21 -42.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952606.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.556 kcal (2) G-P(sol) polarization free energy of solvation -36.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds