Wall clock time and date at job start Tue Mar 31 2020 06:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99703 * 2 1 4 4 H 1.48508 * 109.46992 * 240.00168 * 3 2 1 5 5 H 1.48496 * 109.47386 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46887 * 120.00589 * 3 2 1 7 7 C 1.37874 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99865 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00347 * 0.26712 * 7 2 1 10 10 O 1.42102 * 106.40443 * 293.27298 * 9 7 2 11 11 O 1.42104 * 106.39801 * 66.18950 * 9 7 2 12 12 N 1.65597 * 107.22146 * 179.72804 * 9 7 2 13 13 C 1.46924 * 120.62929 * 269.72638 * 12 9 7 14 14 C 1.53625 * 108.54480 * 126.36891 * 13 12 9 15 15 C 1.53036 * 109.24155 * 54.84970 * 14 13 12 16 16 C 1.50707 * 109.44547 * 178.49525 * 15 14 13 17 17 O 1.21286 * 119.99623 * 85.38355 * 16 15 14 18 18 N 1.34775 * 120.00154 * 265.37973 * 16 15 14 19 19 C 1.46914 * 120.63250 * 5.14254 * 18 16 15 20 20 C 1.53622 * 108.54528 * 126.36625 * 19 18 16 21 21 C 1.53043 * 109.24008 * 54.85872 * 20 19 18 22 22 C 1.53041 * 109.53398 * 298.50883 * 21 20 19 23 23 C 1.46923 * 120.62677 * 185.42105 * 18 16 15 24 24 C 1.53033 * 109.54026 * 298.51370 * 15 14 13 25 25 C 1.46925 * 120.62918 * 89.99687 * 12 9 7 26 26 H 0.96998 * 120.00168 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.58517 * 246.19889 * 13 12 9 28 28 H 1.09002 * 109.58920 * 6.62145 * 13 12 9 29 29 H 1.08998 * 109.63019 * 294.86083 * 14 13 12 30 30 H 1.08998 * 109.45839 * 174.74067 * 14 13 12 31 31 H 1.09003 * 109.46035 * 58.53797 * 15 14 13 32 32 H 1.08999 * 109.58749 * 246.20133 * 19 18 16 33 33 H 1.09005 * 109.58839 * 6.62584 * 19 18 16 34 34 H 1.08997 * 109.63357 * 294.86593 * 20 19 18 35 35 H 1.09000 * 109.46213 * 174.73700 * 20 19 18 36 36 H 1.09000 * 109.45806 * 178.49450 * 21 20 19 37 37 H 1.08996 * 109.45974 * 58.52678 * 21 20 19 38 38 H 1.08992 * 109.50466 * 301.41297 * 22 21 20 39 39 H 1.09002 * 109.49614 * 181.31644 * 22 21 20 40 40 H 1.09000 * 109.58893 * 353.37483 * 23 18 16 41 41 H 1.08999 * 109.58580 * 113.79768 * 23 18 16 42 42 H 1.09003 * 109.49900 * 301.41242 * 24 15 14 43 43 H 1.09000 * 109.52345 * 181.33484 * 24 15 14 44 44 H 1.08998 * 109.58556 * 353.38070 * 25 12 9 45 45 H 1.09004 * 109.58218 * 113.65782 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 16 1.1236 -2.7200 -0.0083 10 8 0.4514 -2.8018 1.2410 11 8 0.4514 -2.7888 -1.2585 12 7 2.2483 -3.9354 -0.0147 13 6 2.7522 -4.4824 -1.2818 14 6 4.2869 -4.4140 -1.2676 15 6 4.8121 -5.1300 -0.0212 16 6 6.3188 -5.0977 -0.0215 17 8 6.9049 -4.1380 0.4328 18 7 7.0149 -6.1354 -0.5266 19 6 6.3225 -7.2535 -1.1814 20 6 6.9306 -7.4544 -2.5778 21 6 8.4436 -7.6430 -2.4466 22 6 9.0639 -6.3884 -1.8274 23 6 8.4803 -6.1728 -0.4275 24 6 4.2873 -4.4265 1.2325 25 6 2.7569 -4.4912 1.2467 26 1 -0.4850 0.8400 0.0004 27 1 2.4309 -5.5188 -1.3859 28 1 2.3664 -3.8928 -2.1135 29 1 4.6069 -3.3721 -1.2506 30 1 4.6803 -4.9009 -2.1598 31 1 4.4711 -6.1653 -0.0263 32 1 6.4514 -8.1599 -0.5899 33 1 5.2611 -7.0226 -1.2733 34 1 6.7251 -6.5804 -3.1959 35 1 6.4926 -8.3386 -3.0408 36 1 8.8753 -7.8125 -3.4330 37 1 8.6484 -8.5023 -1.8081 38 1 8.8384 -5.5245 -2.4525 39 1 10.1443 -6.5141 -1.7558 40 1 8.8434 -5.2285 -0.0217 41 1 8.7817 -6.9928 0.2243 42 1 4.6073 -3.3846 1.2260 43 1 4.6806 -4.9223 2.1200 44 1 2.3741 -3.9075 2.0839 45 1 2.4338 -5.5275 1.3459 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192960923.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:28 Heat of formation + Delta-G solvation = -138.646158 kcal Electronic energy + Delta-G solvation = -27770.290458 eV Core-core repulsion = 23913.317395 eV Total energy + Delta-G solvation = -3856.973063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.54567 -38.08318 -37.01199 -35.28369 -33.94413 -33.30747 -33.04020 -32.14033 -31.10979 -30.70409 -26.15265 -26.07285 -24.51817 -23.35593 -23.00835 -21.32017 -20.28613 -18.99605 -18.39464 -17.46620 -17.37136 -16.34315 -15.84473 -15.36468 -14.98770 -14.95824 -14.81631 -14.46007 -14.27761 -14.15548 -13.77557 -13.59035 -13.52345 -13.27125 -13.10590 -12.73939 -12.48776 -12.02868 -11.96513 -11.78086 -11.57193 -11.29628 -11.22152 -11.15699 -11.06276 -10.93486 -10.88360 -10.60101 -10.55293 -10.53852 -10.27585 -10.09871 -10.03353 -9.55638 -9.19362 -8.88944 -8.79008 -8.20575 -6.65480 -5.27162 2.27933 2.62395 2.84896 3.13243 3.16713 3.23796 4.09728 4.31170 4.43882 4.52549 4.54826 4.67964 4.68263 4.78407 4.87320 4.97276 4.97934 5.08981 5.20457 5.36285 5.40280 5.44588 5.48821 5.53590 5.61507 5.64427 5.70453 5.72608 5.76046 5.80984 5.88273 5.97918 6.00583 6.04414 6.11141 6.20231 6.35838 6.37661 6.49393 6.62446 6.82608 7.28017 7.37492 7.58973 8.03666 8.17090 8.94114 10.28015 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.018643 B = 0.003498 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.531848 B = 8001.509201 C = 8589.417123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.134 3.866 3 Si 0.918 3.082 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.263 1.263 7 C -1.019 5.019 8 H 0.102 0.898 9 S 2.715 3.285 10 O -1.004 7.004 11 O -1.004 7.004 12 N -1.012 6.012 13 C 0.130 3.870 14 C -0.123 4.123 15 C -0.101 4.101 16 C 0.522 3.478 17 O -0.535 6.535 18 N -0.618 5.618 19 C 0.103 3.897 20 C -0.136 4.136 21 C -0.119 4.119 22 C -0.135 4.135 23 C 0.110 3.890 24 C -0.118 4.118 25 C 0.129 3.871 26 H 0.291 0.709 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.068 0.932 44 H 0.095 0.905 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.529 -16.405 -3.732 22.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.084 4.084 3 Si 0.742 3.258 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.188 1.188 7 C -1.152 5.152 8 H 0.121 0.879 9 S 2.816 3.184 10 O -0.994 6.994 11 O -0.995 6.995 12 N -0.847 5.847 13 C 0.004 3.996 14 C -0.162 4.162 15 C -0.123 4.123 16 C 0.311 3.689 17 O -0.411 6.411 18 N -0.352 5.352 19 C -0.020 4.020 20 C -0.174 4.174 21 C -0.157 4.157 22 C -0.173 4.173 23 C -0.013 4.013 24 C -0.157 4.157 25 C 0.002 3.998 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.113 0.887 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.705 -15.955 -3.475 21.974 hybrid contribution 1.172 1.059 -0.090 1.582 sum 15.877 -14.895 -3.565 22.060 Atomic orbital electron populations 1.69888 1.06767 1.30776 1.40339 1.24731 0.94419 1.00744 0.88457 0.86236 0.79896 0.79758 0.79905 1.18866 1.20163 1.18798 1.30613 1.06173 1.11827 1.66638 0.87943 1.00509 0.72116 0.72980 0.72771 1.93351 1.72772 1.87557 1.45734 1.93349 1.72789 1.87619 1.45719 1.58233 1.62089 1.54776 1.09631 1.21258 0.92008 0.99329 0.87022 1.21974 0.97053 1.02021 0.95182 1.21330 0.90317 1.01732 0.98896 1.20913 0.90211 0.81396 0.76391 1.90687 1.71496 1.32677 1.46247 1.48166 1.06844 1.21484 1.58725 1.21908 0.97582 0.89361 0.93115 1.22003 0.96005 1.02648 0.96791 1.21513 0.95389 0.97798 1.01013 1.21913 1.00026 0.98687 0.96699 1.21553 0.79815 1.03137 0.96774 1.21822 0.96192 1.02512 0.95198 1.21200 0.92457 0.99132 0.86977 0.89888 0.92247 0.88640 0.90115 0.91283 0.89226 0.91413 0.88954 0.91202 0.90623 0.91732 0.91840 0.91436 0.90923 0.89039 0.91813 0.89743 0.91303 0.88678 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.20 13.19 55.43 0.73 -24.47 16 2 C 0.13 3.80 5.46 -17.82 -0.10 3.70 16 3 Si 0.92 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.26 -5.92 7.11 56.52 0.40 -5.51 16 7 C -1.02 -28.41 9.75 30.60 0.30 -28.11 16 8 H 0.10 2.67 7.81 -52.49 -0.41 2.26 16 9 S 2.72 71.95 4.97 -107.50 -0.53 71.42 16 10 O -1.00 -29.17 16.73 -57.17 -0.96 -30.13 16 11 O -1.00 -28.97 16.72 -57.17 -0.96 -29.92 16 12 N -1.01 -20.07 3.28 -113.27 -0.37 -20.45 16 13 C 0.13 2.11 6.41 -3.49 -0.02 2.08 16 14 C -0.12 -1.72 5.27 -26.39 -0.14 -1.86 16 15 C -0.10 -1.32 1.69 -91.73 -0.15 -1.48 16 16 C 0.52 7.22 6.69 -10.98 -0.07 7.15 16 17 O -0.54 -9.53 15.71 5.55 0.09 -9.44 16 18 N -0.62 -6.49 2.97 -172.51 -0.51 -7.00 16 19 C 0.10 0.77 6.18 -3.49 -0.02 0.75 16 20 C -0.14 -0.88 6.10 -26.39 -0.16 -1.04 16 21 C -0.12 -0.74 5.88 -26.69 -0.16 -0.89 16 22 C -0.13 -1.01 6.08 -26.61 -0.16 -1.17 16 23 C 0.11 1.03 6.44 -3.71 -0.02 1.00 16 24 C -0.12 -1.78 4.99 -26.62 -0.13 -1.91 16 25 C 0.13 2.16 6.37 -3.72 -0.02 2.14 16 26 H 0.29 7.79 8.31 -40.82 -0.34 7.46 16 27 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 28 H 0.10 1.67 7.12 -51.93 -0.37 1.30 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 31 H 0.09 0.93 6.18 -51.93 -0.32 0.60 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.66 5.45 -51.93 -0.28 0.38 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 1.04 7.00 -51.93 -0.36 0.68 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.08 1.49 7.90 -51.93 -0.41 1.08 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.09 1.74 7.13 -51.93 -0.37 1.37 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 364.40 15.07 5.49 5.49 Total: -1.00 -36.80 364.40 -10.07 -46.86 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.15 Total: 1.15 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -0.87 Total: -19.63 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.15 Total: -51.91 kcal Atomic # 8 Polarization: -67.66 SS G_CDS: -1.83 Total: -69.49 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 71.95 SS G_CDS: -0.53 Total: 71.42 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.80 -10.07 -46.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192960923.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.783 kcal (2) G-P(sol) polarization free energy of solvation -36.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds