Wall clock time and date at job start Tue Mar 31 2020 06:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99703 * 2 1 4 4 H 1.48508 * 109.46992 * 240.00168 * 3 2 1 5 5 H 1.48496 * 109.47386 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46887 * 120.00589 * 3 2 1 7 7 C 1.37874 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99865 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00347 * 0.26712 * 7 2 1 10 10 O 1.42102 * 106.40443 * 293.27298 * 9 7 2 11 11 O 1.42104 * 106.39801 * 66.18950 * 9 7 2 12 12 N 1.65597 * 107.22146 * 179.72804 * 9 7 2 13 13 C 1.46924 * 120.62929 * 269.72638 * 12 9 7 14 14 C 1.53625 * 108.54480 * 126.36891 * 13 12 9 15 15 C 1.53036 * 109.24155 * 54.84970 * 14 13 12 16 16 C 1.50707 * 109.44547 * 178.49525 * 15 14 13 17 17 O 1.21286 * 119.99623 * 85.38355 * 16 15 14 18 18 N 1.34775 * 120.00154 * 265.37973 * 16 15 14 19 19 C 1.46914 * 120.63250 * 5.14254 * 18 16 15 20 20 C 1.53622 * 108.54528 * 126.36625 * 19 18 16 21 21 C 1.53043 * 109.24008 * 54.85872 * 20 19 18 22 22 C 1.53041 * 109.53398 * 298.50883 * 21 20 19 23 23 C 1.46923 * 120.62677 * 185.42105 * 18 16 15 24 24 C 1.53033 * 109.54026 * 298.51370 * 15 14 13 25 25 C 1.46925 * 120.62918 * 89.99687 * 12 9 7 26 26 H 0.96998 * 120.00168 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.58517 * 246.19889 * 13 12 9 28 28 H 1.09002 * 109.58920 * 6.62145 * 13 12 9 29 29 H 1.08998 * 109.63019 * 294.86083 * 14 13 12 30 30 H 1.08998 * 109.45839 * 174.74067 * 14 13 12 31 31 H 1.09003 * 109.46035 * 58.53797 * 15 14 13 32 32 H 1.08999 * 109.58749 * 246.20133 * 19 18 16 33 33 H 1.09005 * 109.58839 * 6.62584 * 19 18 16 34 34 H 1.08997 * 109.63357 * 294.86593 * 20 19 18 35 35 H 1.09000 * 109.46213 * 174.73700 * 20 19 18 36 36 H 1.09000 * 109.45806 * 178.49450 * 21 20 19 37 37 H 1.08996 * 109.45974 * 58.52678 * 21 20 19 38 38 H 1.08992 * 109.50466 * 301.41297 * 22 21 20 39 39 H 1.09002 * 109.49614 * 181.31644 * 22 21 20 40 40 H 1.09000 * 109.58893 * 353.37483 * 23 18 16 41 41 H 1.08999 * 109.58580 * 113.79768 * 23 18 16 42 42 H 1.09003 * 109.49900 * 301.41242 * 24 15 14 43 43 H 1.09000 * 109.52345 * 181.33484 * 24 15 14 44 44 H 1.08998 * 109.58556 * 353.38070 * 25 12 9 45 45 H 1.09004 * 109.58218 * 113.65782 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 16 1.1236 -2.7200 -0.0083 10 8 0.4514 -2.8018 1.2410 11 8 0.4514 -2.7888 -1.2585 12 7 2.2483 -3.9354 -0.0147 13 6 2.7522 -4.4824 -1.2818 14 6 4.2869 -4.4140 -1.2676 15 6 4.8121 -5.1300 -0.0212 16 6 6.3188 -5.0977 -0.0215 17 8 6.9049 -4.1380 0.4328 18 7 7.0149 -6.1354 -0.5266 19 6 6.3225 -7.2535 -1.1814 20 6 6.9306 -7.4544 -2.5778 21 6 8.4436 -7.6430 -2.4466 22 6 9.0639 -6.3884 -1.8274 23 6 8.4803 -6.1728 -0.4275 24 6 4.2873 -4.4265 1.2325 25 6 2.7569 -4.4912 1.2467 26 1 -0.4850 0.8400 0.0004 27 1 2.4309 -5.5188 -1.3859 28 1 2.3664 -3.8928 -2.1135 29 1 4.6069 -3.3721 -1.2506 30 1 4.6803 -4.9009 -2.1598 31 1 4.4711 -6.1653 -0.0263 32 1 6.4514 -8.1599 -0.5899 33 1 5.2611 -7.0226 -1.2733 34 1 6.7251 -6.5804 -3.1959 35 1 6.4926 -8.3386 -3.0408 36 1 8.8753 -7.8125 -3.4330 37 1 8.6484 -8.5023 -1.8081 38 1 8.8384 -5.5245 -2.4525 39 1 10.1443 -6.5141 -1.7558 40 1 8.8434 -5.2285 -0.0217 41 1 8.7817 -6.9928 0.2243 42 1 4.6073 -3.3846 1.2260 43 1 4.6806 -4.9223 2.1200 44 1 2.3741 -3.9075 2.0839 45 1 2.4338 -5.5275 1.3459 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192960923.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:27 Heat of formation + Delta-G solvation = -166.069202 kcal Electronic energy + Delta-G solvation = -27771.479610 eV Core-core repulsion = 23913.317395 eV Total energy + Delta-G solvation = -3858.162216 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.51617 -39.11284 -38.08966 -37.46348 -36.13885 -35.21269 -34.20328 -33.18094 -32.04528 -31.79324 -28.25922 -27.11209 -25.45098 -24.33168 -24.02334 -22.27145 -21.40551 -20.47791 -19.76607 -19.17158 -18.37422 -18.21520 -17.13452 -16.74314 -16.67075 -16.17119 -16.01682 -15.43166 -15.32407 -15.25676 -15.10414 -14.86447 -14.54899 -14.37248 -14.23167 -13.98261 -13.80752 -13.50350 -13.26324 -13.19122 -13.08285 -13.03950 -12.49745 -12.43171 -12.35921 -12.24253 -12.17960 -12.11795 -11.84071 -11.66541 -11.58734 -11.45696 -11.35261 -11.26930 -11.02096 -10.63046 -9.77691 -9.60283 -8.76117 -7.48959 0.31166 1.29213 1.30950 1.44010 1.58082 2.01320 2.17608 2.55236 2.83141 3.45352 3.71301 3.78589 3.80467 3.88260 4.02094 4.03896 4.11712 4.13782 4.20133 4.38197 4.40530 4.41038 4.46486 4.60299 4.65523 4.70955 4.74447 4.78595 4.85322 4.87913 4.93016 4.97385 4.98008 5.11102 5.17738 5.20246 5.21476 5.26788 5.36738 5.38988 5.49159 5.63686 5.89298 6.00556 6.40559 6.77480 7.18425 8.18596 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.018643 B = 0.003498 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.531848 B = 8001.509201 C = 8589.417123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.981 3.019 4 H -0.253 1.253 5 H -0.258 1.258 6 H -0.255 1.255 7 C -1.044 5.044 8 H 0.108 0.892 9 S 2.723 3.277 10 O -1.039 7.039 11 O -1.037 7.037 12 N -1.009 6.009 13 C 0.122 3.878 14 C -0.116 4.116 15 C -0.095 4.095 16 C 0.518 3.482 17 O -0.588 6.588 18 N -0.610 5.610 19 C 0.094 3.906 20 C -0.135 4.135 21 C -0.117 4.117 22 C -0.131 4.131 23 C 0.105 3.895 24 C -0.113 4.113 25 C 0.123 3.877 26 H 0.299 0.701 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.104 0.896 31 H 0.132 0.868 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.056 0.944 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.047 0.953 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.261 -19.005 -4.506 26.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.138 4.138 3 Si 0.799 3.201 4 H -0.177 1.177 5 H -0.181 1.181 6 H -0.179 1.179 7 C -1.177 5.177 8 H 0.127 0.873 9 S 2.824 3.176 10 O -1.029 7.029 11 O -1.027 7.027 12 N -0.848 5.848 13 C -0.003 4.003 14 C -0.155 4.155 15 C -0.116 4.116 16 C 0.308 3.692 17 O -0.468 6.468 18 N -0.342 5.342 19 C -0.027 4.027 20 C -0.173 4.173 21 C -0.155 4.155 22 C -0.169 4.169 23 C -0.017 4.017 24 C -0.153 4.153 25 C -0.002 4.002 26 H 0.109 0.891 27 H 0.121 0.879 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.123 0.877 31 H 0.149 0.851 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.102 0.898 42 H 0.066 0.934 43 H 0.109 0.891 44 H 0.090 0.910 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 16.435 -18.603 -4.276 25.189 hybrid contribution 0.711 1.721 0.137 1.867 sum 17.146 -16.882 -4.140 24.415 Atomic orbital electron populations 1.69963 1.08506 1.32324 1.41578 1.25894 0.95323 1.04997 0.87603 0.85301 0.78965 0.75293 0.80521 1.17696 1.18140 1.17947 1.31030 1.06740 1.13428 1.66515 0.87342 0.99882 0.72678 0.73515 0.71486 1.93292 1.74471 1.88263 1.46922 1.93292 1.74380 1.88301 1.46706 1.57726 1.61363 1.53451 1.12280 1.21604 0.93278 1.00985 0.84456 1.21893 0.95440 1.00745 0.97435 1.21306 0.89943 1.03420 0.96958 1.21001 0.90484 0.81478 0.76276 1.90672 1.72369 1.34862 1.48879 1.48270 1.07407 1.21214 1.57335 1.22241 0.97814 0.88859 0.93776 1.22014 0.96222 1.03092 0.95959 1.21521 0.95162 0.97173 1.01608 1.21882 1.00997 0.98882 0.95127 1.21667 0.79279 1.02469 0.98314 1.21730 0.94877 1.01073 0.97617 1.21463 0.93439 1.00593 0.84696 0.89056 0.87871 0.90618 0.93521 0.87727 0.85077 0.89125 0.88083 0.92537 0.88366 0.90889 0.90477 0.93363 0.89517 0.91855 0.89778 0.93395 0.89101 0.91016 0.88254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.51 13.19 21.45 0.28 -54.22 16 2 C 0.07 4.32 5.46 84.65 0.46 4.79 16 3 Si 0.98 43.56 29.54 68.60 2.03 45.59 16 4 H -0.25 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 6 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 7 C -1.04 -60.14 9.75 67.73 0.66 -59.48 16 8 H 0.11 5.87 7.81 -2.91 -0.02 5.85 16 9 S 2.72 148.71 4.97 -56.49 -0.28 148.43 16 10 O -1.04 -62.55 16.73 -128.00 -2.14 -64.69 16 11 O -1.04 -61.64 16.72 -128.00 -2.14 -63.78 16 12 N -1.01 -39.85 3.28 -512.29 -1.68 -41.54 16 13 C 0.12 3.75 6.41 86.51 0.55 4.30 16 14 C -0.12 -3.05 5.27 30.82 0.16 -2.89 16 15 C -0.10 -2.26 1.69 -11.51 -0.02 -2.28 16 16 C 0.52 13.66 6.69 87.66 0.59 14.25 16 17 O -0.59 -21.34 15.71 -3.05 -0.05 -21.39 16 18 N -0.61 -11.31 2.97 -818.09 -2.43 -13.73 16 19 C 0.09 1.00 6.18 86.51 0.53 1.53 16 20 C -0.13 -1.20 6.10 30.82 0.19 -1.02 16 21 C -0.12 -1.02 5.88 30.62 0.18 -0.84 16 22 C -0.13 -1.69 6.08 30.67 0.19 -1.50 16 23 C 0.10 1.79 6.44 86.36 0.56 2.35 16 24 C -0.11 -3.34 4.99 30.67 0.15 -3.18 16 25 C 0.12 4.02 6.37 86.36 0.55 4.57 16 26 H 0.30 16.43 8.31 -92.71 -0.77 15.66 16 27 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 28 H 0.08 2.65 7.12 -2.39 -0.02 2.63 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.10 2.01 8.05 -2.39 -0.02 2.00 16 31 H 0.13 2.04 6.18 -2.39 -0.01 2.03 16 32 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.10 0.90 5.45 -2.38 -0.01 0.89 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 1.46 7.00 -2.39 -0.02 1.44 16 41 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.05 1.75 7.90 -2.39 -0.02 1.74 16 43 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.07 2.68 7.13 -2.39 -0.02 2.66 16 45 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -85.19 364.40 -0.68 -85.87 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.98 Total: 18.87 kcal Atomic # 6 Polarization: -44.15 SS G_CDS: 4.75 Total: -39.40 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -3.83 Total: -109.49 kcal Atomic # 8 Polarization: -145.54 SS G_CDS: -4.33 Total: -149.87 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 148.71 SS G_CDS: -0.28 Total: 148.43 kcal Total: -85.19 -0.68 -85.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192960923.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.201 kcal (2) G-P(sol) polarization free energy of solvation -85.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds