Wall clock time and date at job start Tue Mar 31 2020 05:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86796 * 119.99913 * 2 1 4 4 H 1.48500 * 109.47108 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47204 * 299.99979 * 3 2 1 6 6 H 1.48502 * 109.46964 * 59.99936 * 3 2 1 7 7 C 1.39937 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99892 * 195.09570 * 7 2 1 9 9 C 1.41439 * 120.00226 * 14.82789 * 7 2 1 10 10 C 1.40783 * 120.17683 * 205.10549 * 9 7 2 11 11 C 1.37708 * 120.04241 * 179.97438 * 10 9 7 12 12 C 1.38373 * 120.41166 * 359.97438 * 11 10 9 13 13 C 1.39887 * 120.35449 * 359.97438 * 12 11 10 14 14 C 1.47887 * 120.02094 * 179.97438 * 13 12 11 15 15 O 1.21551 * 119.99853 * 187.97112 * 14 13 12 16 16 N 1.34773 * 120.00375 * 7.97570 * 14 13 12 17 17 C 1.47294 * 135.92690 * 356.70857 * 16 14 13 18 18 C 1.52601 * 87.57693 * 153.92571 * 17 16 14 19 19 C 1.47283 * 135.92877 * 177.07528 * 16 14 13 20 20 C 1.53347 * 116.36619 * 269.05091 * 18 17 16 21 21 C 1.54763 * 103.67434 * 205.95647 * 20 18 17 22 22 C 1.54552 * 104.07642 * 359.14275 * 21 20 18 23 23 H 1.09006 * 110.31988 * 264.69336 * 22 21 20 24 24 C 1.50706 * 110.32494 * 142.59360 * 22 21 20 25 25 N 1.34773 * 120.00268 * 64.99259 * 24 22 21 26 26 O 1.21275 * 119.99650 * 244.99598 * 24 22 21 27 27 O 1.43107 * 116.33169 * 142.33158 * 18 17 16 28 28 C 1.39025 * 119.95215 * 359.76313 * 13 12 11 29 29 H 0.96994 * 120.00099 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.97952 * 359.97386 * 10 9 7 31 31 H 1.07998 * 119.79876 * 179.97438 * 11 10 9 32 32 H 1.07995 * 119.82596 * 179.97438 * 12 11 10 33 33 H 1.09001 * 113.51760 * 268.57913 * 17 16 14 34 34 H 1.08994 * 113.51204 * 39.17092 * 17 16 14 35 35 H 1.08997 * 113.51762 * 320.82933 * 19 16 14 36 36 H 1.09009 * 113.51725 * 91.35819 * 19 16 14 37 37 H 1.09003 * 110.57982 * 324.50750 * 20 18 17 38 38 H 1.08999 * 110.57962 * 87.25357 * 20 18 17 39 39 H 1.09010 * 110.50623 * 117.78831 * 21 20 18 40 40 H 1.08999 * 110.51036 * 240.35163 * 21 20 18 41 41 H 0.97008 * 119.99897 * 0.02562 * 25 24 22 42 42 H 0.96990 * 120.00388 * 180.02562 * 25 24 22 43 43 H 1.07995 * 120.20559 * 180.23509 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0601 -1.2280 0.2441 9 6 1.3361 -2.4166 -0.3124 10 6 1.8240 -3.6453 0.1715 11 6 1.1674 -4.8164 -0.1344 12 6 0.0263 -4.7959 -0.9167 13 6 -0.4739 -3.5844 -1.4056 14 6 -1.6938 -3.5711 -2.2416 15 8 -2.0467 -2.5429 -2.7853 16 7 -2.4142 -4.6990 -2.4006 17 6 -2.2892 -6.1034 -1.9746 18 6 -3.8087 -6.2015 -2.0750 19 6 -3.6672 -5.0671 -3.0815 20 6 -4.5977 -5.8788 -0.8003 21 6 -5.9147 -6.6727 -0.9744 22 6 -5.7605 -7.3597 -2.3502 23 1 -6.2348 -6.7607 -3.1277 24 6 -6.3613 -8.7414 -2.3157 25 7 -7.6873 -8.8953 -2.1308 26 8 -5.6514 -9.7148 -2.4543 27 8 -4.3335 -7.4355 -2.5748 28 6 0.1740 -2.3926 -1.1014 29 1 -0.4850 0.8400 0.0004 30 1 2.7139 -3.6694 0.7831 31 1 1.5454 -5.7568 0.2386 32 1 -0.4809 -5.7200 -1.1512 33 1 -1.7643 -6.7312 -2.6946 34 1 -1.9106 -6.2177 -0.9589 35 1 -4.4471 -4.3104 -2.9964 36 1 -3.5211 -5.4092 -4.1062 37 1 -4.0572 -6.2216 0.0820 38 1 -4.7980 -4.8094 -0.7341 39 1 -6.0188 -7.4175 -0.1852 40 1 -6.7704 -5.9975 -0.9760 41 1 -8.2552 -8.1166 -2.0202 42 1 -8.0739 -9.7845 -2.1082 43 1 -0.2107 -1.4547 -1.4735 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275475864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:17 Heat of formation + Delta-G solvation = -44.535037 kcal Electronic energy + Delta-G solvation = -27739.237856 eV Core-core repulsion = 23750.901806 eV Total energy + Delta-G solvation = -3988.336050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.34787 -39.76965 -38.51090 -37.08460 -36.35127 -34.19277 -33.73923 -32.33134 -30.70963 -29.53450 -29.31654 -26.93733 -26.39657 -25.11098 -23.13594 -22.14081 -20.99487 -20.85605 -20.16835 -18.80553 -18.09183 -17.64749 -17.32660 -16.41715 -16.18007 -15.88578 -15.71843 -15.19175 -14.79123 -14.77252 -14.57903 -14.11895 -13.91269 -13.53955 -13.34567 -13.15317 -12.81157 -12.59048 -12.46581 -12.27833 -12.10993 -11.68784 -11.66861 -11.37153 -11.16551 -11.09166 -11.01742 -10.68626 -10.48808 -10.20607 -10.10642 -10.05150 -9.83850 -9.59572 -9.25109 -9.08394 -8.47623 -7.65084 -7.51249 -6.78923 -4.43206 2.16471 2.22968 2.67523 2.79609 3.07202 3.12002 3.13118 3.15135 3.63694 3.81353 3.91215 4.05219 4.22323 4.27571 4.51124 4.55231 4.62688 4.88537 5.05796 5.12629 5.28620 5.36362 5.45647 5.52728 5.58606 5.59415 5.64415 5.72219 5.81577 6.01973 6.22043 6.32219 6.34031 6.52642 6.72537 6.89502 6.97667 7.02748 7.21404 7.36872 7.68552 7.79470 7.86806 7.92121 8.08435 8.16296 8.49637 8.78242 8.81477 8.85430 10.14676 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.026164 B = 0.002550 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.913675 B =10976.565362 C =11457.341915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.071 3.929 3 Si 0.912 3.088 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.458 4.458 8 H 0.081 0.919 9 C 0.096 3.904 10 C -0.208 4.208 11 C -0.100 4.100 12 C -0.227 4.227 13 C -0.124 4.124 14 C 0.599 3.401 15 O -0.541 6.541 16 N -0.640 5.640 17 C 0.117 3.883 18 C 0.057 3.943 19 C 0.091 3.909 20 C -0.120 4.120 21 C -0.143 4.143 22 C 0.055 3.945 23 H 0.099 0.901 24 C 0.523 3.477 25 N -0.853 5.853 26 O -0.520 6.520 27 O -0.320 6.320 28 C -0.092 4.092 29 H 0.283 0.717 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.402 0.598 42 H 0.405 0.595 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.665 -11.553 -1.595 19.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.487 4.487 8 H 0.099 0.901 9 C 0.094 3.906 10 C -0.228 4.228 11 C -0.119 4.119 12 C -0.247 4.247 13 C -0.127 4.127 14 C 0.394 3.606 15 O -0.418 6.418 16 N -0.379 5.379 17 C -0.006 4.006 18 C 0.016 3.984 19 C -0.032 4.032 20 C -0.158 4.158 21 C -0.181 4.181 22 C -0.006 4.006 23 H 0.117 0.883 24 C 0.306 3.694 25 N -0.419 5.419 26 O -0.393 6.393 27 O -0.236 6.236 28 C -0.112 4.112 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.123 0.877 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.230 0.770 42 H 0.236 0.764 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.156 -11.296 -2.057 19.014 hybrid contribution -0.288 0.840 0.108 0.894 sum -15.444 -10.457 -1.949 18.752 Atomic orbital electron populations 1.69778 1.07535 1.29508 1.34543 1.25966 0.94825 1.01567 0.92334 0.86202 0.80812 0.80752 0.78643 1.18362 1.19593 1.19929 1.19623 0.97241 0.90646 1.41186 0.90071 1.17610 0.91353 0.92532 0.89141 1.21138 1.02844 0.92952 1.05829 1.20470 0.95827 0.96697 0.98875 1.20941 1.00596 0.95813 1.07335 1.19356 0.95439 0.95555 1.02362 1.18469 0.82353 0.80075 0.79685 1.90716 1.70484 1.30892 1.49706 1.49189 1.25559 1.08121 1.55025 1.23084 0.92373 0.82382 1.02785 1.23332 0.96088 0.84954 0.93979 1.23243 0.87707 0.94975 0.97306 1.22458 0.94417 1.01758 0.97152 1.22975 0.99451 0.99815 0.95853 1.22903 0.85112 0.93804 0.98794 0.88343 1.20258 0.82454 0.90865 0.75792 1.43735 1.08274 1.12710 1.77218 1.90795 1.60310 1.40974 1.47264 1.89105 1.16939 1.35688 1.81871 1.21706 0.96213 0.96252 0.97002 0.90585 0.88604 0.88851 0.87674 0.88787 0.88059 0.90189 0.89443 0.89170 0.89128 0.89915 0.89243 0.76959 0.76350 0.84519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.77 10.80 55.55 0.60 -20.17 16 2 C 0.07 1.80 5.20 -17.34 -0.09 1.71 16 3 Si 0.91 18.77 29.59 -169.99 -5.03 13.74 16 4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.46 -12.01 9.07 -37.73 -0.34 -12.36 16 8 H 0.08 2.03 7.89 -52.48 -0.41 1.61 16 9 C 0.10 2.54 5.58 -106.87 -0.60 1.95 16 10 C -0.21 -4.93 9.78 -38.81 -0.38 -5.31 16 11 C -0.10 -2.14 10.01 -39.73 -0.40 -2.54 16 12 C -0.23 -4.81 9.19 -38.91 -0.36 -5.17 16 13 C -0.12 -2.96 5.87 -105.04 -0.62 -3.58 16 14 C 0.60 13.43 8.00 -12.31 -0.10 13.34 16 15 O -0.54 -13.82 17.14 5.32 0.09 -13.73 16 16 N -0.64 -11.04 3.67 -186.39 -0.68 -11.72 16 17 C 0.12 1.63 6.06 -7.68 -0.05 1.59 16 18 C 0.06 0.68 1.39 -91.00 -0.13 0.56 16 19 C 0.09 1.22 8.11 -7.84 -0.06 1.16 16 20 C -0.12 -1.20 6.50 -25.62 -0.17 -1.36 16 21 C -0.14 -1.00 6.62 -24.99 -0.17 -1.17 16 22 C 0.06 0.48 3.73 -27.06 -0.10 0.38 16 23 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 24 C 0.52 4.99 7.35 -10.98 -0.08 4.91 16 25 N -0.85 -3.95 8.86 31.22 0.28 -3.67 16 26 O -0.52 -7.68 17.39 -13.60 -0.24 -7.92 16 27 O -0.32 -3.99 10.73 -54.40 -0.58 -4.57 16 28 C -0.09 -2.45 8.23 -38.44 -0.32 -2.77 16 29 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 30 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 31 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.11 1.88 3.83 -52.49 -0.20 1.68 16 33 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.10 1.39 6.17 -51.93 -0.32 1.07 16 35 H 0.08 1.01 8.07 -51.93 -0.42 0.59 16 36 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 37 H 0.09 0.91 8.12 -51.93 -0.42 0.49 16 38 H 0.09 0.94 7.92 -51.93 -0.41 0.53 16 39 H 0.08 0.57 7.86 -51.92 -0.41 0.16 16 40 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.40 0.57 8.83 -40.82 -0.36 0.21 16 42 H 0.41 1.53 8.93 -40.82 -0.36 1.16 16 43 H 0.14 3.96 5.67 -52.49 -0.30 3.66 16 LS Contribution 360.43 15.07 5.43 5.43 Total: -1.00 -34.75 360.43 -9.37 -44.12 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -5.29 Total: 7.16 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -3.95 Total: -8.67 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.19 Total: -35.56 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.73 Total: -26.22 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.75 -9.37 -44.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275475864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.414 kcal (2) G-P(sol) polarization free energy of solvation -34.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds