Wall clock time and date at job start Tue Mar 31 2020 05:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47144 * 2 1 4 4 O 1.42903 * 109.47191 * 239.99975 * 2 1 3 5 5 C 1.50700 * 109.47105 * 120.00096 * 2 1 3 6 6 C 1.35352 * 126.75197 * 125.24649 * 5 2 1 7 7 N 1.35312 * 106.17240 * 180.12571 * 6 5 2 8 8 C 1.46506 * 125.86709 * 179.90780 * 7 6 5 9 9 C 1.53941 * 113.73862 * 13.45142 * 8 7 6 10 10 N 1.47814 * 86.03525 * 222.08754 * 9 8 7 11 11 S 1.65601 * 134.45370 * 204.64709 * 10 9 8 12 12 O 1.42100 * 104.28133 * 25.93670 * 11 10 9 13 13 O 1.42099 * 104.27875 * 153.79435 * 11 10 9 14 14 C 1.81403 * 104.45121 * 269.86599 * 11 10 9 15 15 C 1.52992 * 109.47269 * 180.02562 * 14 11 10 16 16 C 1.50698 * 109.47401 * 179.97438 * 15 14 11 17 17 H 1.07999 * 119.99608 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00322 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00057 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00182 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46972 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47159 * 120.00187 * 20 18 16 23 23 H 1.48492 * 109.47545 * 240.00172 * 20 18 16 24 24 C 1.47581 * 91.05175 * 24.55151 * 10 9 8 25 25 N 1.28716 * 108.26519 * 359.63741 * 7 6 5 26 26 N 1.28629 * 110.17872 * 0.23380 * 25 7 6 27 27 H 1.09000 * 109.47004 * 299.99652 * 1 2 3 28 28 H 1.08993 * 109.47142 * 60.00034 * 1 2 3 29 29 H 1.08998 * 109.47144 * 179.97438 * 1 2 3 30 30 H 0.96698 * 113.99705 * 299.99884 * 4 2 1 31 31 H 1.07995 * 126.91387 * 0.02562 * 6 5 2 32 32 H 1.08995 * 112.94332 * 145.04627 * 8 7 6 33 33 H 1.08993 * 113.77581 * 336.35275 * 9 8 7 34 34 H 1.09005 * 113.76794 * 107.75067 * 9 8 7 35 35 H 1.09002 * 109.46848 * 300.00604 * 14 11 10 36 36 H 1.08998 * 109.47131 * 60.00133 * 14 11 10 37 37 H 1.09002 * 109.47366 * 299.99904 * 15 14 11 38 38 H 1.09003 * 109.47656 * 59.99609 * 15 14 11 39 39 H 0.97003 * 119.99837 * 179.97438 * 19 18 16 40 40 H 1.08997 * 113.76829 * 221.15069 * 24 10 9 41 41 H 1.09000 * 113.76607 * 89.75631 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0323 -0.7104 1.2305 6 6 2.8924 -1.7549 1.2682 7 7 3.0536 -2.0633 2.5758 8 6 3.8989 -3.1356 3.1070 9 6 4.8792 -3.7209 2.0745 10 7 4.5185 -5.0412 2.6328 11 16 5.2701 -6.5151 2.7037 12 8 6.6555 -6.2054 2.6406 13 8 4.7105 -7.1391 3.8511 14 6 4.7390 -7.3672 1.1929 15 6 5.3741 -8.7581 1.1417 16 6 4.9323 -9.4662 -0.1130 17 1 4.2656 -8.9732 -0.8050 18 6 5.3801 -10.7430 -0.3782 19 7 6.1924 -11.3431 0.4642 20 14 4.8320 -11.6210 -1.9332 21 1 3.9249 -10.7363 -2.7076 22 1 6.0206 -11.9548 -2.7584 23 1 4.1151 -12.8697 -1.5702 24 6 3.2214 -4.5179 3.1037 25 7 2.3413 -1.2490 3.2731 26 7 1.7199 -0.4296 2.5005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.7210 -1.5952 -1.2329 31 1 3.3553 -2.2448 0.4244 32 1 4.3651 -2.8776 4.0578 33 1 4.5643 -3.5803 1.0406 34 1 5.9181 -3.4391 2.2460 35 1 3.6532 -7.4636 1.1927 36 1 5.0527 -6.7919 0.3218 37 1 6.4598 -8.6621 1.1420 38 1 5.0600 -9.3333 2.0128 39 1 6.5071 -12.2415 0.2779 40 1 2.9390 -4.8712 4.0954 41 1 2.4183 -4.6119 2.3727 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320581169.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:05 Heat of formation + Delta-G solvation = 11.341916 kcal Electronic energy + Delta-G solvation = -25829.450971 eV Core-core repulsion = 21875.441535 eV Total energy + Delta-G solvation = -3954.009436 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.69466 -39.77556 -37.91522 -36.81503 -35.67881 -34.04713 -33.99840 -32.01504 -31.28950 -30.20817 -28.44730 -26.90615 -25.71131 -24.49896 -23.72793 -21.77154 -21.48358 -20.89776 -18.90342 -18.45960 -17.80393 -16.94314 -16.88862 -16.50881 -16.02061 -15.71520 -15.51085 -15.24584 -14.82531 -14.65336 -14.46276 -14.12147 -13.54985 -13.37840 -13.29542 -13.06859 -12.62530 -12.43658 -12.29740 -11.95827 -11.89800 -11.87743 -11.82864 -11.74660 -11.52032 -11.18181 -11.14213 -11.09011 -10.81455 -10.54186 -10.52068 -10.35022 -9.98539 -9.61139 -9.52489 -9.11993 -8.60220 -6.22071 -4.28428 0.39683 1.20399 1.88964 2.14499 2.59647 3.18819 3.26449 3.29196 3.40324 3.74148 3.80666 3.98431 4.06566 4.08763 4.27222 4.30022 4.42524 4.60081 4.78307 4.83213 4.91305 4.99134 5.08019 5.13254 5.19011 5.24266 5.31443 5.35278 5.49776 5.62799 5.66281 5.72935 5.81222 5.86633 6.20858 6.31875 7.11849 7.16853 7.22255 7.70519 8.05896 8.16548 8.75103 9.37183 10.88907 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.014218 B = 0.002805 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.882718 B = 9978.792161 C =11467.947026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.193 3.807 3 H 0.116 0.884 4 O -0.554 6.554 5 C -0.060 4.060 6 C -0.036 4.036 7 N -0.281 5.281 8 C 0.106 3.894 9 C 0.123 3.877 10 N -1.037 6.037 11 S 2.608 3.392 12 O -0.953 6.953 13 O -0.953 6.953 14 C -0.586 4.586 15 C 0.027 3.973 16 C -0.522 4.522 17 H 0.062 0.938 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.901 3.099 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.124 3.876 25 N -0.078 5.078 26 N -0.259 5.259 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.378 0.622 31 H 0.194 0.806 32 H 0.149 0.851 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.266 0.734 40 H 0.106 0.894 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.414 20.879 0.204 22.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.132 3.868 3 H 0.134 0.866 4 O -0.359 6.359 5 C -0.198 4.198 6 C -0.187 4.187 7 N -0.075 5.075 8 C 0.002 3.998 9 C -0.004 4.004 10 N -0.873 5.873 11 S 2.708 3.292 12 O -0.944 6.944 13 O -0.943 6.943 14 C -0.720 4.720 15 C -0.012 4.012 16 C -0.562 4.562 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.527 5.527 20 Si 0.728 3.272 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.003 4.003 25 N -0.057 5.057 26 N -0.127 5.127 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.226 0.774 31 H 0.211 0.789 32 H 0.167 0.833 33 H 0.114 0.886 34 H 0.127 0.873 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.124 0.876 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.773 21.229 2.310 22.725 hybrid contribution -0.411 -1.657 -2.241 2.817 sum -8.184 19.572 0.069 21.214 Atomic orbital electron populations 1.22417 0.94687 1.02989 1.03421 1.19951 0.93214 0.95162 0.78449 0.86604 1.86636 1.77314 1.29629 1.42291 1.22850 1.01782 0.99417 0.95801 1.23294 1.04823 1.02017 0.88547 1.47448 1.31086 1.23592 1.05326 1.24270 0.91449 0.83106 1.00952 1.23157 1.00521 0.79638 0.97082 1.60689 1.29483 1.24617 1.72556 1.05443 0.73987 0.71795 0.77957 1.93556 1.30426 1.82285 1.88110 1.93559 1.79520 1.74192 1.47057 1.30495 1.11386 1.12412 1.17708 1.18990 0.96380 0.85832 0.99984 1.21008 1.29779 0.99802 1.05570 0.91974 1.25074 0.94833 0.97389 0.97165 1.69958 1.32522 1.14183 1.36060 0.86398 0.78575 0.79582 0.82640 1.19626 1.20719 1.20729 1.23106 0.86860 0.87994 1.02370 1.78344 1.06188 1.00273 1.20859 1.75029 1.18965 1.18417 1.00308 0.90596 0.91169 0.92259 0.77382 0.78926 0.83320 0.88562 0.87336 0.86200 0.86160 0.94756 0.94774 0.92469 0.87550 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.09 9.51 37.16 0.35 -0.74 16 2 C 0.19 1.35 4.14 -27.88 -0.12 1.24 16 3 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 4 O -0.55 -3.68 12.81 -35.23 -0.45 -4.13 16 5 C -0.06 -0.54 6.45 -82.77 -0.53 -1.07 16 6 C -0.04 -0.28 10.01 -17.05 -0.17 -0.45 16 7 N -0.28 -2.47 3.54 -56.30 -0.20 -2.67 16 8 C 0.11 0.80 5.14 -70.15 -0.36 0.44 16 9 C 0.12 0.92 8.30 -2.84 -0.02 0.90 16 10 N -1.04 -11.12 4.00 -118.74 -0.48 -11.59 16 11 S 2.61 41.79 5.93 -107.50 -0.64 41.15 16 12 O -0.95 -17.95 18.02 -57.54 -1.04 -18.99 16 13 O -0.95 -18.18 18.02 -57.54 -1.04 -19.22 16 14 C -0.59 -10.18 6.12 37.15 0.23 -9.96 16 15 C 0.03 0.66 4.98 -27.89 -0.14 0.52 16 16 C -0.52 -13.88 9.11 -34.44 -0.31 -14.20 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 20 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 C 0.12 1.04 8.72 -2.97 -0.03 1.01 16 25 N -0.08 -0.89 13.16 60.35 0.79 -0.10 16 26 N -0.26 -3.00 12.40 33.29 0.41 -2.59 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.38 1.31 8.87 45.56 0.40 1.72 16 31 H 0.19 0.88 6.61 -52.49 -0.35 0.53 16 32 H 0.15 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.10 0.49 6.31 -51.93 -0.33 0.17 16 34 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.12 1.86 8.14 -51.92 -0.42 1.44 16 36 H 0.12 1.84 8.14 -51.93 -0.42 1.41 16 37 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 365.51 15.07 5.51 5.51 Total: -1.00 -36.84 365.51 -7.49 -44.33 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -4.89 Total: -1.42 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -1.20 Total: -20.80 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 1.27 Total: -41.98 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -2.53 Total: -42.34 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 41.79 SS G_CDS: -0.64 Total: 41.15 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.84 -7.49 -44.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320581169.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.675 kcal (2) G-P(sol) polarization free energy of solvation -36.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds