Wall clock time and date at job start Tue Mar 31 2020 05:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47144 * 2 1 4 4 O 1.42903 * 109.47191 * 239.99975 * 2 1 3 5 5 C 1.50700 * 109.47105 * 120.00096 * 2 1 3 6 6 C 1.35352 * 126.75197 * 125.24649 * 5 2 1 7 7 N 1.35312 * 106.17240 * 180.12571 * 6 5 2 8 8 C 1.46506 * 125.86709 * 179.90780 * 7 6 5 9 9 C 1.53941 * 113.73862 * 13.45142 * 8 7 6 10 10 N 1.47814 * 86.03525 * 222.08754 * 9 8 7 11 11 S 1.65601 * 134.45370 * 204.64709 * 10 9 8 12 12 O 1.42100 * 104.28133 * 25.93670 * 11 10 9 13 13 O 1.42099 * 104.27875 * 153.79435 * 11 10 9 14 14 C 1.81403 * 104.45121 * 269.86599 * 11 10 9 15 15 C 1.52992 * 109.47269 * 180.02562 * 14 11 10 16 16 C 1.50698 * 109.47401 * 179.97438 * 15 14 11 17 17 H 1.07999 * 119.99608 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00322 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00057 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00182 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46972 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47159 * 120.00187 * 20 18 16 23 23 H 1.48492 * 109.47545 * 240.00172 * 20 18 16 24 24 C 1.47581 * 91.05175 * 24.55151 * 10 9 8 25 25 N 1.28716 * 108.26519 * 359.63741 * 7 6 5 26 26 N 1.28629 * 110.17872 * 0.23380 * 25 7 6 27 27 H 1.09000 * 109.47004 * 299.99652 * 1 2 3 28 28 H 1.08993 * 109.47142 * 60.00034 * 1 2 3 29 29 H 1.08998 * 109.47144 * 179.97438 * 1 2 3 30 30 H 0.96698 * 113.99705 * 299.99884 * 4 2 1 31 31 H 1.07995 * 126.91387 * 0.02562 * 6 5 2 32 32 H 1.08995 * 112.94332 * 145.04627 * 8 7 6 33 33 H 1.08993 * 113.77581 * 336.35275 * 9 8 7 34 34 H 1.09005 * 113.76794 * 107.75067 * 9 8 7 35 35 H 1.09002 * 109.46848 * 300.00604 * 14 11 10 36 36 H 1.08998 * 109.47131 * 60.00133 * 14 11 10 37 37 H 1.09002 * 109.47366 * 299.99904 * 15 14 11 38 38 H 1.09003 * 109.47656 * 59.99609 * 15 14 11 39 39 H 0.97003 * 119.99837 * 179.97438 * 19 18 16 40 40 H 1.08997 * 113.76829 * 221.15069 * 24 10 9 41 41 H 1.09000 * 113.76607 * 89.75631 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0323 -0.7104 1.2305 6 6 2.8924 -1.7549 1.2682 7 7 3.0536 -2.0633 2.5758 8 6 3.8989 -3.1356 3.1070 9 6 4.8792 -3.7209 2.0745 10 7 4.5185 -5.0412 2.6328 11 16 5.2701 -6.5151 2.7037 12 8 6.6555 -6.2054 2.6406 13 8 4.7105 -7.1391 3.8511 14 6 4.7390 -7.3672 1.1929 15 6 5.3741 -8.7581 1.1417 16 6 4.9323 -9.4662 -0.1130 17 1 4.2656 -8.9732 -0.8050 18 6 5.3801 -10.7430 -0.3782 19 7 6.1924 -11.3431 0.4642 20 14 4.8320 -11.6210 -1.9332 21 1 3.9249 -10.7363 -2.7076 22 1 6.0206 -11.9548 -2.7584 23 1 4.1151 -12.8697 -1.5702 24 6 3.2214 -4.5179 3.1037 25 7 2.3413 -1.2490 3.2731 26 7 1.7199 -0.4296 2.5005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.7210 -1.5952 -1.2329 31 1 3.3553 -2.2448 0.4244 32 1 4.3651 -2.8776 4.0578 33 1 4.5643 -3.5803 1.0406 34 1 5.9181 -3.4391 2.2460 35 1 3.6532 -7.4636 1.1927 36 1 5.0527 -6.7919 0.3218 37 1 6.4598 -8.6621 1.1420 38 1 5.0600 -9.3333 2.0128 39 1 6.5071 -12.2415 0.2779 40 1 2.9390 -4.8712 4.0954 41 1 2.4183 -4.6119 2.3727 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320581169.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:04 Heat of formation + Delta-G solvation = -20.048097 kcal Electronic energy + Delta-G solvation = -25830.812144 eV Core-core repulsion = 21875.441535 eV Total energy + Delta-G solvation = -3955.370609 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.37121 -40.49116 -38.41871 -38.22506 -37.08965 -35.90950 -34.72928 -33.14086 -32.61240 -30.76763 -29.26286 -27.57854 -27.54260 -25.06725 -24.54443 -23.44080 -22.17893 -21.59877 -19.86315 -19.31648 -18.97945 -18.32600 -17.65920 -17.43472 -17.13277 -16.88556 -16.53776 -16.25525 -15.91927 -15.52871 -15.42931 -15.03427 -14.86728 -14.49084 -14.04414 -13.88785 -13.74940 -13.59052 -13.27734 -13.22352 -13.04945 -12.96757 -12.92148 -12.81491 -12.79408 -12.56793 -12.27386 -12.13317 -12.05603 -11.87232 -11.76001 -11.33816 -11.22867 -11.03827 -10.67083 -10.25028 -10.15131 -8.27752 -6.41749 -0.87503 0.55722 1.18165 1.41085 1.41221 1.45771 1.54298 1.64477 2.36841 2.73156 2.81036 2.97034 3.06444 3.12204 3.22927 3.47131 3.73478 3.87806 3.98489 3.99097 4.08033 4.28650 4.29703 4.35151 4.44803 4.45820 4.58658 4.71281 4.73423 4.75735 4.85330 5.02924 5.08207 5.17028 5.26560 5.26783 5.32957 5.58759 5.67154 6.04405 6.72765 6.80178 7.29067 7.46831 8.84603 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.014218 B = 0.002805 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.882718 B = 9978.792161 C =11467.947026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.199 3.801 3 H 0.114 0.886 4 O -0.561 6.561 5 C -0.069 4.069 6 C -0.026 4.026 7 N -0.275 5.275 8 C 0.113 3.887 9 C 0.122 3.878 10 N -1.037 6.037 11 S 2.642 3.358 12 O -0.985 6.985 13 O -0.989 6.989 14 C -0.587 4.587 15 C 0.018 3.982 16 C -0.537 4.537 17 H 0.077 0.923 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.973 3.027 21 H -0.254 1.254 22 H -0.279 1.279 23 H -0.280 1.280 24 C 0.120 3.880 25 N -0.111 5.111 26 N -0.288 5.288 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.393 0.607 31 H 0.228 0.772 32 H 0.156 0.844 33 H 0.130 0.870 34 H 0.116 0.884 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.007 0.993 38 H 0.005 0.995 39 H 0.267 0.733 40 H 0.105 0.895 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.512 22.131 -1.941 24.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.137 3.863 3 H 0.132 0.868 4 O -0.367 6.367 5 C -0.208 4.208 6 C -0.177 4.177 7 N -0.069 5.069 8 C 0.009 3.991 9 C -0.004 4.004 10 N -0.876 5.876 11 S 2.742 3.258 12 O -0.975 6.975 13 O -0.979 6.979 14 C -0.719 4.719 15 C -0.021 4.021 16 C -0.576 4.576 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.575 5.575 20 Si 0.797 3.203 21 H -0.177 1.177 22 H -0.205 1.205 23 H -0.206 1.206 24 C -0.006 4.006 25 N -0.090 5.090 26 N -0.155 5.155 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.243 0.757 31 H 0.244 0.756 32 H 0.174 0.826 33 H 0.147 0.853 34 H 0.134 0.866 35 H 0.159 0.841 36 H 0.164 0.836 37 H 0.026 0.974 38 H 0.023 0.977 39 H 0.076 0.924 40 H 0.123 0.877 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.885 22.477 0.164 24.170 hybrid contribution -0.101 -1.936 -1.572 2.496 sum -8.986 20.541 -1.409 22.464 Atomic orbital electron populations 1.22361 0.94266 1.03058 1.03300 1.19901 0.93434 0.94974 0.77955 0.86810 1.86618 1.77429 1.30884 1.41776 1.23226 1.02066 0.99978 0.95502 1.23833 1.03782 1.01287 0.88767 1.47485 1.30580 1.23173 1.05702 1.24173 0.91095 0.82426 1.01433 1.23556 1.01219 0.76865 0.98718 1.60096 1.30799 1.23772 1.72918 1.03997 0.73047 0.72184 0.76599 1.93510 1.32671 1.83141 1.88200 1.93508 1.80024 1.76006 1.48401 1.30401 1.12243 1.08956 1.20287 1.18838 0.95285 0.89685 0.98288 1.21552 1.29449 1.00222 1.06411 0.90438 1.26112 0.94893 0.98587 1.00684 1.70103 1.34242 1.14702 1.38418 0.85278 0.78326 0.78315 0.78418 1.17714 1.20468 1.20587 1.23386 0.86245 0.87935 1.03030 1.78318 1.07587 1.01415 1.21645 1.74987 1.19777 1.19138 1.01632 0.91724 0.90243 0.92083 0.75736 0.75574 0.82630 0.85274 0.86564 0.84080 0.83611 0.97426 0.97654 0.92412 0.87653 0.86839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 9.51 71.98 0.68 -1.16 16 2 C 0.20 2.37 4.14 29.85 0.12 2.49 16 3 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 4 O -0.56 -5.72 12.81 -148.98 -1.91 -7.63 16 5 C -0.07 -1.08 6.45 41.60 0.27 -0.81 16 6 C -0.03 -0.30 10.01 83.49 0.84 0.53 16 7 N -0.28 -4.13 3.54 -332.05 -1.18 -5.31 16 8 C 0.11 1.38 5.14 46.75 0.24 1.62 16 9 C 0.12 1.38 8.30 86.44 0.72 2.10 16 10 N -1.04 -19.56 4.00 -529.58 -2.12 -21.68 16 11 S 2.64 82.61 5.93 -56.49 -0.34 82.27 16 12 O -0.98 -36.77 18.02 -127.65 -2.30 -39.07 16 13 O -0.99 -37.90 18.02 -127.65 -2.30 -40.20 16 14 C -0.59 -19.61 6.12 71.98 0.44 -19.17 16 15 C 0.02 0.89 4.98 29.84 0.15 1.04 16 16 C -0.54 -28.46 9.11 25.60 0.23 -28.22 16 17 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 18 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 19 N -0.93 -55.56 13.29 21.44 0.28 -55.27 16 20 Si 0.97 41.83 29.54 68.60 2.03 43.85 16 21 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 22 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 24 C 0.12 1.69 8.72 86.49 0.75 2.44 16 25 N -0.11 -2.42 13.16 37.02 0.49 -1.93 16 26 N -0.29 -6.37 12.40 -48.60 -0.60 -6.98 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.39 1.31 8.87 -74.06 -0.66 0.66 16 31 H 0.23 0.90 6.61 -2.91 -0.02 0.88 16 32 H 0.16 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.13 0.63 6.31 -2.39 -0.02 0.62 16 34 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.14 4.06 8.14 -2.39 -0.02 4.04 16 36 H 0.15 4.06 8.14 -2.39 -0.02 4.04 16 37 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 40 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -82.13 365.51 -2.63 -84.76 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 0.40 Total: 6.11 kcal Atomic # 6 Polarization: -43.82 SS G_CDS: 4.91 Total: -38.91 kcal Atomic # 7 Polarization: -88.05 SS G_CDS: -3.12 Total: -91.17 kcal Atomic # 8 Polarization: -80.39 SS G_CDS: -6.51 Total: -86.90 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 16 Polarization: 82.61 SS G_CDS: -0.34 Total: 82.27 kcal Total: -82.13 -2.63 -84.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320581169.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.709 kcal (2) G-P(sol) polarization free energy of solvation -82.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds