Wall clock time and date at job start Tue Mar 31 2020 04:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39800 * 125.73002 * 2 1 4 4 C 1.36154 * 107.87820 * 179.97438 * 3 2 1 5 5 N 1.39098 * 126.30306 * 180.02562 * 4 3 2 6 6 C 1.34774 * 119.99698 * 359.97118 * 5 4 3 7 7 O 1.21396 * 120.00165 * 0.02562 * 6 5 4 8 8 C 1.49306 * 120.00085 * 180.02562 * 6 5 4 9 9 O 1.21365 * 119.99587 * 359.97438 * 8 6 5 10 10 N 1.34773 * 120.00502 * 180.02562 * 8 6 5 11 11 C 1.46497 * 120.00137 * 179.97438 * 10 8 6 12 12 C 1.50709 * 109.46891 * 179.97438 * 11 10 8 13 13 H 1.07995 * 119.99810 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99792 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00212 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00033 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47239 * 59.99590 * 16 14 12 18 18 H 1.48504 * 109.47317 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47176 * 299.99753 * 16 14 12 20 20 N 1.36319 * 107.39489 * 359.97438 * 4 3 2 21 21 C 1.39392 * 126.12752 * 179.97438 * 20 4 3 22 22 N 1.32349 * 119.19590 * 359.73456 * 21 20 4 23 23 C 1.32270 * 120.76016 * 179.75482 * 22 21 20 24 24 C 1.38617 * 119.17236 * 0.51035 * 23 22 21 25 25 C 1.38625 * 118.52483 * 359.74472 * 24 23 22 26 26 N 1.32263 * 119.17165 * 359.97438 * 25 24 23 27 27 N 1.30829 * 125.73100 * 179.68756 * 2 1 3 28 28 H 1.09001 * 109.46953 * 90.00009 * 1 2 3 29 29 H 1.09000 * 109.47318 * 209.99607 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.00237 * 1 2 3 31 31 H 1.07998 * 126.06224 * 359.97438 * 3 2 1 32 32 H 0.96993 * 120.00299 * 179.97438 * 5 4 3 33 33 H 0.97006 * 119.99878 * 359.97438 * 10 8 6 34 34 H 1.08992 * 109.47164 * 299.99147 * 11 10 8 35 35 H 1.08997 * 109.47119 * 59.99877 * 11 10 8 36 36 H 0.97002 * 119.99665 * 180.02562 * 15 14 12 37 37 H 1.08001 * 120.40713 * 180.27667 * 23 22 21 38 38 H 1.08001 * 120.73583 * 179.77071 * 24 23 22 39 39 H 1.08000 * 120.41384 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3234 1.1349 0.0000 4 6 3.6194 0.7175 0.0006 5 7 4.7470 1.5320 0.0013 6 6 4.6096 2.8728 0.0008 7 8 3.5020 3.3695 0.0003 8 6 5.8199 3.7472 0.0010 9 8 6.9272 3.2505 0.0020 10 7 5.6826 5.0879 0.0011 11 6 6.8701 5.9458 0.0018 12 6 6.4452 7.3917 0.0011 13 1 5.3957 7.6461 -0.0002 14 6 7.3965 8.3897 0.0022 15 7 8.6746 8.0799 0.0043 16 14 6.8699 10.1819 0.0021 17 1 6.0575 10.4593 1.2138 18 1 8.0736 11.0516 0.0039 19 1 6.0598 10.4598 -1.2112 20 7 3.6086 -0.6457 0.0015 21 6 4.7278 -1.4765 0.0018 22 7 5.9348 -0.9335 -0.0042 23 6 7.0181 -1.6925 0.0008 24 6 6.8769 -3.0715 0.0017 25 6 5.5978 -3.6060 0.0027 26 7 4.5577 -2.7890 0.0033 27 7 2.2711 -1.0620 0.0058 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.9860 2.1608 -0.0004 32 1 5.6320 1.1352 0.0020 33 1 4.7975 5.4848 0.0007 34 1 7.4650 5.7421 0.8921 35 1 7.4660 5.7421 -0.8878 36 1 9.3438 8.7822 0.0054 37 1 8.0003 -1.2434 0.0004 38 1 7.7441 -3.7152 0.0020 39 1 5.4524 -4.6762 0.0038 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324839985.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:51 Heat of formation + Delta-G solvation = 83.034592 kcal Electronic energy + Delta-G solvation = -26813.129300 eV Core-core repulsion = 22759.077492 eV Total energy + Delta-G solvation = -4054.051808 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.123 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.26106 -41.09295 -40.15150 -38.13075 -35.61100 -34.58426 -34.30389 -34.01036 -32.41512 -31.54965 -29.56867 -28.46301 -27.76198 -25.27656 -24.95464 -24.17597 -22.60366 -21.13284 -20.77191 -19.73470 -19.22985 -18.08071 -17.66664 -16.68884 -16.63056 -16.54923 -16.03924 -15.62343 -15.37669 -15.13601 -14.94707 -14.66409 -14.31749 -13.99899 -13.85036 -13.81503 -13.26577 -13.11411 -13.08464 -12.56517 -12.08973 -11.98320 -11.65191 -11.43670 -11.37798 -11.16129 -11.07499 -10.92481 -10.72158 -10.66764 -10.35157 -9.74804 -9.53569 -9.24859 -8.93705 -8.86657 -8.36154 -8.16312 -6.24943 -4.32588 0.12554 0.58549 1.30694 1.37130 1.98911 2.51543 2.61140 3.23501 3.28115 3.30171 3.35276 3.38218 3.57512 3.88584 3.93086 4.14522 4.28949 4.46227 4.62140 4.67021 4.78388 4.97020 5.11933 5.23166 5.29419 5.43820 5.52924 5.56900 5.57694 5.88291 5.92065 6.28092 6.52932 6.77112 6.90248 7.01586 7.10346 7.22910 7.31750 7.49459 7.67912 7.76797 7.82903 8.30052 8.48965 8.77778 9.33825 10.85049 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.015765 B = 0.002702 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.709361 B =10359.152454 C =12114.412803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.106 3.894 3 C -0.266 4.266 4 C 0.336 3.664 5 N -0.619 5.619 6 C 0.512 3.488 7 O -0.491 6.491 8 C 0.498 3.502 9 O -0.530 6.530 10 N -0.667 5.667 11 C 0.247 3.753 12 C -0.548 4.548 13 H 0.067 0.933 14 C 0.066 3.934 15 N -0.885 5.885 16 Si 0.907 3.093 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.274 1.274 20 N -0.333 5.333 21 C 0.566 3.434 22 N -0.553 5.553 23 C 0.192 3.808 24 C -0.252 4.252 25 C 0.181 3.819 26 N -0.511 5.511 27 N -0.257 5.257 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.188 0.812 32 H 0.437 0.563 33 H 0.405 0.595 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.268 0.732 37 H 0.185 0.815 38 H 0.158 0.842 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.150 -22.203 -0.014 23.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.064 4.064 3 C -0.297 4.297 4 C 0.120 3.880 5 N -0.272 5.272 6 C 0.295 3.705 7 O -0.362 6.362 8 C 0.275 3.725 9 O -0.408 6.408 10 N -0.316 5.316 11 C 0.127 3.873 12 C -0.586 4.586 13 H 0.085 0.915 14 C -0.138 4.138 15 N -0.522 5.522 16 Si 0.734 3.266 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.199 1.199 20 N -0.118 5.118 21 C 0.212 3.788 22 N -0.273 5.273 23 C 0.026 3.974 24 C -0.275 4.275 25 C 0.014 3.986 26 N -0.228 5.228 27 N -0.077 5.077 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.204 0.796 32 H 0.282 0.718 33 H 0.241 0.759 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.202 0.798 38 H 0.176 0.824 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -8.552 -22.665 -0.012 24.225 hybrid contribution 0.828 1.129 -0.011 1.400 sum -7.724 -21.536 -0.023 22.879 Atomic orbital electron populations 1.20272 0.85374 1.03898 1.03579 1.22673 0.97646 0.90399 0.95721 1.21790 0.88355 1.01771 1.17803 1.18252 0.89445 0.80430 0.99824 1.43092 1.09271 1.05389 1.69450 1.21005 0.91149 0.81838 0.76540 1.90662 1.26534 1.73903 1.45108 1.19376 0.87668 0.84349 0.81075 1.90752 1.25620 1.74219 1.50214 1.46415 1.13632 1.03904 1.67663 1.19379 0.81659 0.87741 0.98505 1.21159 0.93714 0.89838 1.53886 0.91510 1.24933 0.94665 0.99818 0.94412 1.69956 0.99956 1.33839 1.48496 0.86413 0.78057 0.83251 0.78881 1.19926 1.21033 1.19922 1.45272 1.04131 1.01430 1.60927 1.18518 0.83427 0.85423 0.91417 1.67340 0.98101 1.42006 1.19902 1.23189 0.96459 0.90429 0.87284 1.22902 1.00419 0.97580 1.06624 1.23261 0.86997 1.00287 0.88015 1.67888 1.35925 1.02330 1.16651 1.77824 0.82427 1.20432 1.26970 0.89814 0.90467 0.89612 0.79550 0.71810 0.75945 0.94581 0.94589 0.92238 0.79773 0.82446 0.80380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.44 36.01 0.38 -0.23 16 2 C 0.11 1.39 7.20 -82.43 -0.59 0.79 16 3 C -0.27 -3.92 9.58 -39.75 -0.38 -4.31 16 4 C 0.34 5.37 7.60 -152.55 -1.16 4.21 16 5 N -0.62 -10.05 5.33 -11.73 -0.06 -10.11 16 6 C 0.51 8.96 7.85 -11.65 -0.09 8.86 16 7 O -0.49 -8.63 13.60 5.46 0.07 -8.56 16 8 C 0.50 9.91 7.88 -11.65 -0.09 9.82 16 9 O -0.53 -11.60 16.47 5.48 0.09 -11.51 16 10 N -0.67 -14.01 5.54 -61.96 -0.34 -14.35 16 11 C 0.25 6.25 5.43 -5.19 -0.03 6.22 16 12 C -0.55 -14.45 9.28 -34.44 -0.32 -14.77 16 13 H 0.07 1.66 7.60 -52.49 -0.40 1.26 16 14 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -25.18 13.29 55.43 0.74 -24.45 16 16 Si 0.91 20.45 29.54 -169.99 -5.02 15.43 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 N -0.33 -5.22 3.80 -12.90 -0.05 -5.27 16 21 C 0.57 8.05 8.45 -321.73 -2.72 5.33 16 22 N -0.55 -6.99 7.66 -13.74 -0.11 -7.10 16 23 C 0.19 1.61 11.30 -17.22 -0.19 1.41 16 24 C -0.25 -1.53 10.17 -39.30 -0.40 -1.93 16 25 C 0.18 1.40 11.30 -17.22 -0.19 1.21 16 26 N -0.51 -6.39 10.24 -13.74 -0.14 -6.54 16 27 N -0.26 -3.89 12.35 33.66 0.42 -3.47 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.19 2.74 5.83 -52.49 -0.31 2.43 16 32 H 0.44 6.97 5.73 -40.82 -0.23 6.73 16 33 H 0.41 7.80 7.79 -40.82 -0.32 7.48 16 34 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.19 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.16 0.37 8.06 -52.49 -0.42 -0.06 16 39 H 0.18 0.68 8.06 -52.49 -0.42 0.25 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -33.75 351.21 -8.78 -42.53 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -3.77 Total: 9.79 kcal Atomic # 6 Polarization: 24.20 SS G_CDS: -5.89 Total: 18.30 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: 0.45 Total: -71.28 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.16 Total: -20.07 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.75 -8.78 -42.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324839985.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.561 kcal (2) G-P(sol) polarization free energy of solvation -33.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds