Wall clock time and date at job start Tue Mar 31 2020 04:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39800 * 125.73002 * 2 1 4 4 C 1.36154 * 107.87820 * 179.97438 * 3 2 1 5 5 N 1.39098 * 126.30306 * 180.02562 * 4 3 2 6 6 C 1.34774 * 119.99698 * 359.97118 * 5 4 3 7 7 O 1.21396 * 120.00165 * 0.02562 * 6 5 4 8 8 C 1.49306 * 120.00085 * 180.02562 * 6 5 4 9 9 O 1.21365 * 119.99587 * 359.97438 * 8 6 5 10 10 N 1.34773 * 120.00502 * 180.02562 * 8 6 5 11 11 C 1.46497 * 120.00137 * 179.97438 * 10 8 6 12 12 C 1.50709 * 109.46891 * 179.97438 * 11 10 8 13 13 H 1.07995 * 119.99810 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99792 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00212 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00033 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47239 * 59.99590 * 16 14 12 18 18 H 1.48504 * 109.47317 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47176 * 299.99753 * 16 14 12 20 20 N 1.36319 * 107.39489 * 359.97438 * 4 3 2 21 21 C 1.39392 * 126.12752 * 179.97438 * 20 4 3 22 22 N 1.32349 * 119.19590 * 359.73456 * 21 20 4 23 23 C 1.32270 * 120.76016 * 179.75482 * 22 21 20 24 24 C 1.38617 * 119.17236 * 0.51035 * 23 22 21 25 25 C 1.38625 * 118.52483 * 359.74472 * 24 23 22 26 26 N 1.32263 * 119.17165 * 359.97438 * 25 24 23 27 27 N 1.30829 * 125.73100 * 179.68756 * 2 1 3 28 28 H 1.09001 * 109.46953 * 90.00009 * 1 2 3 29 29 H 1.09000 * 109.47318 * 209.99607 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.00237 * 1 2 3 31 31 H 1.07998 * 126.06224 * 359.97438 * 3 2 1 32 32 H 0.96993 * 120.00299 * 179.97438 * 5 4 3 33 33 H 0.97006 * 119.99878 * 359.97438 * 10 8 6 34 34 H 1.08992 * 109.47164 * 299.99147 * 11 10 8 35 35 H 1.08997 * 109.47119 * 59.99877 * 11 10 8 36 36 H 0.97002 * 119.99665 * 180.02562 * 15 14 12 37 37 H 1.08001 * 120.40713 * 180.27667 * 23 22 21 38 38 H 1.08001 * 120.73583 * 179.77071 * 24 23 22 39 39 H 1.08000 * 120.41384 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3234 1.1349 0.0000 4 6 3.6194 0.7175 0.0006 5 7 4.7470 1.5320 0.0013 6 6 4.6096 2.8728 0.0008 7 8 3.5020 3.3695 0.0003 8 6 5.8199 3.7472 0.0010 9 8 6.9272 3.2505 0.0020 10 7 5.6826 5.0879 0.0011 11 6 6.8701 5.9458 0.0018 12 6 6.4452 7.3917 0.0011 13 1 5.3957 7.6461 -0.0002 14 6 7.3965 8.3897 0.0022 15 7 8.6746 8.0799 0.0043 16 14 6.8699 10.1819 0.0021 17 1 6.0575 10.4593 1.2138 18 1 8.0736 11.0516 0.0039 19 1 6.0598 10.4598 -1.2112 20 7 3.6086 -0.6457 0.0015 21 6 4.7278 -1.4765 0.0018 22 7 5.9348 -0.9335 -0.0042 23 6 7.0181 -1.6925 0.0008 24 6 6.8769 -3.0715 0.0017 25 6 5.5978 -3.6060 0.0027 26 7 4.5577 -2.7890 0.0033 27 7 2.2711 -1.0620 0.0058 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.9860 2.1608 -0.0004 32 1 5.6320 1.1352 0.0020 33 1 4.7975 5.4848 0.0007 34 1 7.4650 5.7421 0.8921 35 1 7.4660 5.7421 -0.8878 36 1 9.3438 8.7822 0.0054 37 1 8.0003 -1.2434 0.0004 38 1 7.7441 -3.7152 0.0020 39 1 5.4524 -4.6762 0.0038 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324839985.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:50 Heat of formation + Delta-G solvation = 60.518913 kcal Electronic energy + Delta-G solvation = -26814.105653 eV Core-core repulsion = 22759.077492 eV Total energy + Delta-G solvation = -4055.028161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.123 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.29474 -42.03246 -41.50766 -39.72163 -36.96799 -36.13380 -35.23152 -35.00873 -34.36838 -32.31821 -30.77116 -29.67226 -29.24580 -26.64441 -25.89967 -25.09510 -24.31698 -22.45739 -21.85897 -21.24597 -20.29371 -19.52426 -18.55203 -18.19457 -17.84494 -17.66813 -17.25690 -16.98762 -16.93561 -16.47876 -15.92009 -15.82374 -15.75238 -15.25234 -15.03196 -14.91104 -14.53047 -14.07910 -14.02408 -14.00021 -13.80718 -13.29544 -13.05705 -12.85614 -12.69499 -12.37568 -12.28097 -12.22782 -12.22107 -11.80234 -11.54977 -11.44690 -10.86878 -10.83593 -10.49900 -10.09725 -9.82686 -9.53018 -8.30609 -6.46600 -0.74363 -0.06717 0.00324 0.32687 0.85301 1.19167 1.46096 1.48633 1.51126 1.57020 2.01619 2.33958 2.49439 2.60918 2.63302 3.05092 3.05898 3.30619 3.61179 3.65861 3.79609 4.06304 4.15503 4.28355 4.51952 4.62275 4.70998 4.84213 4.88189 4.96905 5.05407 5.17419 5.18496 5.20888 5.45732 5.49639 5.52019 5.73446 5.78842 5.92440 6.23685 6.29694 6.52841 6.62134 6.85104 6.93320 7.26009 8.80778 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.015765 B = 0.002702 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.709361 B =10359.152454 C =12114.412803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.108 3.892 3 C -0.269 4.269 4 C 0.313 3.687 5 N -0.610 5.610 6 C 0.524 3.476 7 O -0.491 6.491 8 C 0.502 3.498 9 O -0.550 6.550 10 N -0.665 5.665 11 C 0.263 3.737 12 C -0.562 4.562 13 H 0.082 0.918 14 C 0.011 3.989 15 N -0.925 5.925 16 Si 0.981 3.019 17 H -0.264 1.264 18 H -0.283 1.283 19 H -0.264 1.264 20 N -0.340 5.340 21 C 0.529 3.471 22 N -0.579 5.579 23 C 0.172 3.828 24 C -0.218 4.218 25 C 0.171 3.829 26 N -0.537 5.537 27 N -0.276 5.276 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.187 0.813 32 H 0.437 0.563 33 H 0.416 0.584 34 H 0.008 0.992 35 H 0.008 0.992 36 H 0.271 0.729 37 H 0.211 0.789 38 H 0.205 0.795 39 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.997 -23.190 -0.029 24.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.062 4.062 3 C -0.300 4.300 4 C 0.097 3.903 5 N -0.263 5.263 6 C 0.305 3.695 7 O -0.364 6.364 8 C 0.281 3.719 9 O -0.430 6.430 10 N -0.315 5.315 11 C 0.142 3.858 12 C -0.600 4.600 13 H 0.100 0.900 14 C -0.189 4.189 15 N -0.563 5.563 16 Si 0.804 3.196 17 H -0.189 1.189 18 H -0.209 1.209 19 H -0.189 1.189 20 N -0.125 5.125 21 C 0.175 3.825 22 N -0.300 5.300 23 C 0.008 3.992 24 C -0.240 4.240 25 C 0.006 3.994 26 N -0.255 5.255 27 N -0.097 5.097 28 H 0.119 0.881 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.204 0.796 32 H 0.282 0.718 33 H 0.253 0.747 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.080 0.920 37 H 0.228 0.772 38 H 0.222 0.778 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -9.406 -23.722 -0.027 25.519 hybrid contribution 1.200 1.196 -0.008 1.694 sum -8.206 -22.527 -0.035 23.975 Atomic orbital electron populations 1.20477 0.82100 1.05262 1.05031 1.23328 0.99474 0.89107 0.94336 1.21936 0.88355 1.02302 1.17411 1.18400 0.89450 0.81080 1.01383 1.42882 1.09722 1.04795 1.68918 1.20220 0.89913 0.82118 0.77263 1.90664 1.26011 1.74055 1.45637 1.19714 0.88306 0.84138 0.79734 1.90733 1.26930 1.74619 1.50701 1.46116 1.12896 1.04157 1.68377 1.18885 0.82526 0.88558 0.95846 1.21540 0.94596 0.90227 1.53636 0.90017 1.25939 0.94539 1.04747 0.93684 1.70092 1.01288 1.35466 1.49480 0.85255 0.77737 0.77126 0.79435 1.18866 1.20878 1.18854 1.45416 1.04737 1.01328 1.61061 1.18683 0.83535 0.86108 0.94145 1.67281 0.98605 1.43441 1.20675 1.23865 0.96369 0.91786 0.87196 1.23395 1.01331 0.96910 1.02321 1.24074 0.86792 1.01571 0.86973 1.67870 1.38207 1.02027 1.17400 1.77751 0.82690 1.21592 1.27650 0.88146 0.89424 0.87883 0.79629 0.71787 0.74734 0.97410 0.97418 0.92045 0.77228 0.77753 0.76490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 10.44 71.24 0.74 -0.32 16 2 C 0.11 2.78 7.20 43.09 0.31 3.09 16 3 C -0.27 -7.97 9.58 22.16 0.21 -7.76 16 4 C 0.31 10.23 7.60 131.12 1.00 11.23 16 5 N -0.61 -20.36 5.33 -309.36 -1.65 -22.01 16 6 C 0.52 18.60 7.85 87.23 0.68 19.29 16 7 O -0.49 -17.31 13.60 -3.39 -0.05 -17.36 16 8 C 0.50 20.52 7.88 87.23 0.69 21.20 16 9 O -0.55 -24.92 16.47 -3.29 -0.05 -24.98 16 10 N -0.67 -28.55 5.54 -468.30 -2.59 -31.15 16 11 C 0.26 13.78 5.43 85.64 0.46 14.25 16 12 C -0.56 -29.86 9.28 25.60 0.24 -29.62 16 13 H 0.08 4.00 7.60 -2.91 -0.02 3.98 16 14 C 0.01 0.61 5.46 84.65 0.46 1.08 16 15 N -0.93 -53.57 13.29 21.45 0.28 -53.28 16 16 Si 0.98 41.54 29.54 68.60 2.03 43.57 16 17 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 18 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 20 N -0.34 -10.94 3.80 -194.74 -0.74 -11.68 16 21 C 0.53 15.28 8.45 261.11 2.21 17.48 16 22 N -0.58 -14.75 7.66 -197.39 -1.51 -16.26 16 23 C 0.17 2.63 11.30 84.72 0.96 3.59 16 24 C -0.22 -1.95 10.17 22.45 0.23 -1.72 16 25 C 0.17 2.24 11.30 84.72 0.96 3.20 16 26 N -0.54 -13.18 10.24 -197.39 -2.02 -15.21 16 27 N -0.28 -8.44 12.35 -47.43 -0.59 -9.02 16 28 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.19 5.43 5.83 -2.91 -0.02 5.41 16 32 H 0.44 14.43 5.73 -92.71 -0.53 13.90 16 33 H 0.42 16.05 7.79 -92.70 -0.72 15.32 16 34 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 37 H 0.21 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.21 -0.14 8.06 -2.91 -0.02 -0.16 16 39 H 0.22 0.87 8.06 -2.91 -0.02 0.85 16 Total: -1.00 -76.25 351.21 2.15 -74.11 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: -0.11 Total: 28.29 kcal Atomic # 6 Polarization: 45.83 SS G_CDS: 9.15 Total: 54.98 kcal Atomic # 7 Polarization: -149.80 SS G_CDS: -8.82 Total: -158.62 kcal Atomic # 8 Polarization: -42.23 SS G_CDS: -0.10 Total: -42.33 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -76.25 2.15 -74.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324839985.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.624 kcal (2) G-P(sol) polarization free energy of solvation -76.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds