Wall clock time and date at job start Tue Mar 31 2020 05:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47061 * 2 1 4 4 C 1.52999 * 109.47375 * 120.00648 * 2 1 3 5 5 H 1.09001 * 109.47213 * 56.18112 * 4 2 1 6 6 N 1.46507 * 109.46880 * 296.18819 * 4 2 1 7 7 S 1.65593 * 120.00282 * 126.22843 * 6 4 2 8 8 C 1.81401 * 104.45076 * 64.59379 * 7 6 4 9 9 O 1.42102 * 104.28043 * 180.66700 * 7 6 4 10 10 O 1.42101 * 104.27595 * 308.52018 * 7 6 4 11 11 C 1.50698 * 109.47217 * 176.18846 * 4 2 1 12 12 O 1.21301 * 120.00203 * 99.19642 * 11 4 2 13 13 N 1.34775 * 119.99973 * 279.19941 * 11 4 2 14 14 C 1.40593 * 120.00227 * 175.14962 * 13 11 4 15 15 C 1.40653 * 126.07947 * 359.97438 * 14 13 11 16 16 N 1.30906 * 108.38174 * 179.77646 * 15 14 13 17 17 N 1.40063 * 108.41158 * 0.37984 * 16 15 14 18 18 C 1.37323 * 126.07008 * 179.87963 * 17 16 15 19 19 H 1.08005 * 120.00062 * 179.69018 * 18 17 16 20 20 C 1.38987 * 120.00086 * 359.41313 * 18 17 16 21 21 N 1.31297 * 119.99905 * 0.27964 * 20 18 17 22 22 Si 1.86801 * 120.00087 * 180.27388 * 20 18 17 23 23 H 1.48503 * 109.47035 * 60.00191 * 22 20 18 24 24 H 1.48494 * 109.47173 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47203 * 300.00253 * 22 20 18 26 26 C 1.35684 * 126.08350 * 179.97438 * 14 13 11 27 27 H 1.09005 * 109.46751 * 303.80828 * 1 2 3 28 28 H 1.09000 * 109.47435 * 63.80805 * 1 2 3 29 29 H 1.09004 * 109.47364 * 183.81624 * 1 2 3 30 30 H 1.08998 * 109.46452 * 240.00066 * 2 1 3 31 31 H 1.08998 * 109.46551 * 183.24927 * 3 2 1 32 32 H 1.08993 * 109.46773 * 303.24574 * 3 2 1 33 33 H 1.08991 * 109.46899 * 63.25278 * 3 2 1 34 34 H 0.97004 * 119.99376 * 306.22562 * 6 4 2 35 35 H 1.08998 * 109.47140 * 60.00075 * 8 7 6 36 36 H 1.08993 * 109.46891 * 180.02562 * 8 7 6 37 37 H 1.09004 * 109.46959 * 299.99949 * 8 7 6 38 38 H 0.97006 * 119.99800 * 355.14487 * 13 11 4 39 39 H 1.08000 * 125.80583 * 0.02562 * 15 14 13 40 40 H 0.96999 * 120.00120 * 180.02562 * 21 20 18 41 41 H 1.07995 * 126.24104 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 1 1.6220 -1.7274 1.2839 6 7 1.6281 0.0201 2.4437 7 16 0.8006 -0.7514 3.6528 8 6 1.9747 -1.9759 4.2950 9 8 0.5618 0.2643 4.6175 10 8 -0.2760 -1.3951 2.9851 11 6 3.5441 -0.8037 1.2028 12 8 4.2145 -0.0100 1.8289 13 7 4.1443 -1.7591 0.4656 14 6 5.5445 -1.7741 0.3399 15 6 6.4385 -0.8592 0.9247 16 7 7.6567 -1.1988 0.5864 17 7 7.5886 -2.3339 -0.2313 18 6 8.6558 -2.9918 -0.7918 19 1 8.4901 -3.8648 -1.4057 20 6 9.9487 -2.5308 -0.5739 21 7 10.1502 -1.4695 0.1724 22 14 11.3998 -3.4212 -1.3426 23 1 11.2599 -3.4114 -2.8210 24 1 12.6603 -2.7360 -0.9596 25 1 11.4328 -4.8245 -0.8579 26 6 6.2737 -2.6738 -0.3671 27 1 -0.3633 0.5718 0.8540 28 1 -0.3634 0.4536 -0.9221 29 1 -0.3634 -1.0254 0.0684 30 1 1.8932 -0.5138 -0.8900 31 1 3.1284 1.4430 -0.0582 32 1 1.6299 1.9728 -0.8594 33 1 1.7251 1.9392 0.9176 34 1 1.8403 0.9631 2.5262 35 1 2.8622 -1.4664 4.6703 36 1 1.5080 -2.5371 5.1044 37 1 2.2594 -2.6604 3.4958 38 1 3.6101 -2.4364 0.0218 39 1 6.1665 -0.0217 1.5499 40 1 11.0525 -1.1475 0.3242 41 1 5.8846 -3.5062 -0.9345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361926475.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:01 Heat of formation + Delta-G solvation = -24.725051 kcal Electronic energy + Delta-G solvation = -26798.832172 eV Core-core repulsion = 22843.258755 eV Total energy + Delta-G solvation = -3955.573417 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.26196 -39.15449 -37.29130 -36.61676 -36.09600 -34.33497 -33.22565 -32.72015 -30.32648 -29.62309 -28.41782 -27.23336 -26.66886 -24.73085 -21.47950 -20.87897 -20.22217 -19.58318 -19.46117 -18.09945 -17.50575 -17.04707 -16.53927 -15.91995 -15.50767 -15.40824 -15.21366 -14.83111 -14.49793 -14.11301 -13.71060 -13.53698 -13.43543 -13.32189 -12.96169 -12.92541 -12.52299 -12.31515 -12.22322 -12.17021 -12.05740 -11.72948 -11.50329 -11.36345 -11.28150 -11.25642 -11.08657 -10.98928 -10.94817 -10.60061 -10.23677 -10.17807 -9.22352 -9.03370 -8.85067 -8.12692 -6.78043 -6.60930 -4.28802 0.09496 2.41409 2.69164 2.97475 3.01256 3.05451 3.43041 3.59558 3.66476 3.83597 4.01996 4.30154 4.51027 4.57507 4.61801 4.62766 4.75798 4.92517 4.97067 5.05119 5.18095 5.44187 5.48713 5.57448 5.61761 5.81309 5.87663 5.99655 6.17734 6.23416 6.27105 6.37945 6.79725 6.85274 6.88384 7.03260 7.17402 7.79650 8.07336 8.20595 8.54768 8.74235 9.31420 9.60660 10.34864 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.023515 B = 0.002836 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.432491 B = 9870.055327 C =10305.487755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.151 4.151 4 C 0.144 3.856 5 H 0.107 0.893 6 N -1.092 6.092 7 S 2.613 3.387 8 C -0.674 4.674 9 O -0.959 6.959 10 O -0.955 6.955 11 C 0.482 3.518 12 O -0.523 6.523 13 N -0.621 5.621 14 C -0.062 4.062 15 C -0.032 4.032 16 N -0.261 5.261 17 N -0.141 5.141 18 C -0.324 4.324 19 H 0.116 0.884 20 C 0.047 3.953 21 N -0.769 5.769 22 Si 0.935 3.065 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.267 1.267 26 C -0.084 4.084 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.425 0.575 35 H 0.134 0.866 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.397 0.603 39 H 0.175 0.825 40 H 0.276 0.724 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.291 -1.437 0.932 16.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.208 4.208 4 C 0.032 3.968 5 H 0.125 0.875 6 N -0.852 5.852 7 S 2.705 3.295 8 C -0.824 4.824 9 O -0.949 6.949 10 O -0.945 6.945 11 C 0.265 3.735 12 O -0.398 6.398 13 N -0.264 5.264 14 C -0.168 4.168 15 C -0.208 4.208 16 N -0.092 5.092 17 N 0.092 4.908 18 C -0.456 4.456 19 H 0.134 0.866 20 C -0.171 4.171 21 N -0.396 5.396 22 Si 0.759 3.241 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.192 1.192 26 C -0.235 4.235 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.262 0.738 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.230 0.770 39 H 0.192 0.808 40 H 0.086 0.914 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -15.302 -0.422 1.853 15.420 hybrid contribution 0.351 -1.045 -0.638 1.274 sum -14.951 -1.467 1.214 15.072 Atomic orbital electron populations 1.21830 0.93675 1.02728 1.01962 1.21317 0.96868 0.97463 0.95609 1.21845 1.02154 0.94950 1.01866 1.20723 0.91971 0.96805 0.87344 0.87545 1.55367 1.76080 1.22395 1.31340 1.04770 0.75372 0.75620 0.73771 1.30547 1.19265 1.19049 1.13501 1.93620 1.84529 1.55346 1.61436 1.93621 1.49854 1.77851 1.73197 1.20738 0.89821 0.82071 0.80837 1.90603 1.64961 1.41053 1.43228 1.42545 1.05547 1.29221 1.49113 1.17251 0.81624 1.04239 1.13682 1.24083 0.89648 1.01856 1.05195 1.78267 1.18153 1.00946 1.11837 1.44545 1.02932 1.16317 1.27041 1.19836 0.83450 1.11468 1.30888 0.86642 1.25639 0.99380 0.95987 0.96056 1.70201 1.22829 1.18295 1.28249 0.85894 0.79245 0.79425 0.79586 1.19136 1.20118 1.19153 1.21268 0.85425 1.04764 1.12017 0.92278 0.92404 0.91858 0.89473 0.91627 0.92292 0.92322 0.73753 0.84692 0.85419 0.85499 0.76996 0.80811 0.91366 0.83717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.02 37.16 0.34 -0.94 16 2 C -0.09 -0.88 2.74 -90.62 -0.25 -1.13 16 3 C -0.15 -1.59 8.73 37.16 0.32 -1.27 16 4 C 0.14 1.50 2.30 -69.08 -0.16 1.34 16 5 H 0.11 0.83 7.59 -51.93 -0.39 0.44 16 6 N -1.09 -11.19 4.18 -5.88 -0.02 -11.22 16 7 S 2.61 26.12 5.99 -107.50 -0.64 25.48 16 8 C -0.67 -5.57 10.88 101.05 1.10 -4.47 16 9 O -0.96 -12.77 18.08 -57.54 -1.04 -13.81 16 10 O -0.96 -11.23 17.57 -57.54 -1.01 -12.24 16 11 C 0.48 7.04 6.08 -10.99 -0.07 6.97 16 12 O -0.52 -9.54 13.51 5.54 0.07 -9.47 16 13 N -0.62 -9.56 5.46 -10.00 -0.05 -9.61 16 14 C -0.06 -1.33 6.90 -83.84 -0.58 -1.91 16 15 C -0.03 -0.81 10.85 -17.04 -0.18 -0.99 16 16 N -0.26 -7.32 10.40 30.80 0.32 -7.00 16 17 N -0.14 -3.73 3.74 -11.41 -0.04 -3.77 16 18 C -0.32 -8.32 10.25 -14.81 -0.15 -8.48 16 19 H 0.12 2.63 7.83 -52.48 -0.41 2.22 16 20 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 21 N -0.77 -21.03 11.81 55.50 0.66 -20.37 16 22 Si 0.93 18.44 29.55 -169.99 -5.02 13.42 16 23 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 24 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 26 C -0.08 -1.86 11.49 -16.39 -0.19 -2.05 16 27 H 0.06 0.55 7.83 -51.93 -0.41 0.15 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.86 7.27 -51.93 -0.38 0.49 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.58 6.49 -51.93 -0.34 0.25 16 34 H 0.43 4.31 7.16 -34.47 -0.25 4.07 16 35 H 0.13 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.13 0.95 8.14 -51.92 -0.42 0.52 16 38 H 0.40 4.50 8.83 -40.82 -0.36 4.14 16 39 H 0.18 4.27 5.94 -52.49 -0.31 3.96 16 40 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.15 2.65 8.06 -52.49 -0.42 2.23 16 LS Contribution 358.65 15.07 5.40 5.40 Total: -1.00 -35.99 358.65 -6.66 -42.65 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -5.36 Total: 12.38 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.85 Total: -51.98 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -1.98 Total: -35.53 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.02 Total: 13.42 kcal Atomic # 16 Polarization: 26.12 SS G_CDS: -0.64 Total: 25.48 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.99 -6.66 -42.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361926475.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.928 kcal (2) G-P(sol) polarization free energy of solvation -35.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds