Wall clock time and date at job start Tue Mar 31 2020 06:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99882 * 2 1 4 4 H 1.48505 * 109.47040 * 239.99700 * 3 2 1 5 5 H 1.48498 * 109.47334 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47180 * 120.00005 * 3 2 1 7 7 C 1.37874 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00161 * 173.00070 * 7 2 1 9 9 C 1.50694 * 120.00121 * 353.00616 * 7 2 1 10 10 C 1.53001 * 115.55401 * 84.78031 * 9 7 2 11 11 S 1.81397 * 109.46761 * 39.91829 * 10 9 7 12 12 O 1.42101 * 110.54820 * 62.30969 * 11 10 9 13 13 O 1.42110 * 110.54144 * 285.55770 * 11 10 9 14 14 N 1.65601 * 104.45162 * 173.93636 * 11 10 9 15 15 C 1.46924 * 120.63032 * 269.98098 * 14 11 10 16 16 C 1.53198 * 108.77304 * 233.62713 * 15 14 11 17 17 C 1.53036 * 109.33641 * 305.37721 * 16 15 14 18 18 C 1.53038 * 109.54004 * 61.32025 * 17 16 15 19 19 H 1.08995 * 109.49904 * 58.64972 * 18 17 16 20 20 C 1.53002 * 109.49576 * 178.71526 * 18 17 16 21 21 C 1.50700 * 109.46895 * 294.93229 * 20 18 17 22 22 N 1.34775 * 119.99759 * 180.02562 * 21 20 18 23 23 O 1.21281 * 120.00197 * 0.02562 * 21 20 18 24 24 C 1.46927 * 120.63086 * 89.99348 * 14 11 10 25 25 C 1.53002 * 117.51619 * 230.48602 * 9 7 2 26 26 C 1.52998 * 60.00077 * 107.47701 * 25 9 7 27 27 H 0.97003 * 120.00115 * 5.02840 * 1 2 3 28 28 H 1.08991 * 109.47320 * 279.91829 * 10 9 7 29 29 H 1.08999 * 109.47260 * 159.91678 * 10 9 7 30 30 H 1.09007 * 109.58863 * 353.40741 * 15 14 11 31 31 H 1.08994 * 109.59202 * 113.69260 * 15 14 11 32 32 H 1.08996 * 109.50054 * 65.31681 * 16 15 14 33 33 H 1.09004 * 109.49284 * 185.41008 * 16 15 14 34 34 H 1.08998 * 109.43251 * 301.31349 * 17 16 15 35 35 H 1.09001 * 109.48198 * 181.35830 * 17 16 15 36 36 H 1.09001 * 109.46690 * 174.93585 * 20 18 17 37 37 H 1.08999 * 109.47202 * 54.93386 * 20 18 17 38 38 H 0.96999 * 120.00269 * 0.02562 * 22 21 20 39 39 H 0.96996 * 119.99902 * 179.97438 * 22 21 20 40 40 H 1.08998 * 109.58763 * 6.59038 * 24 14 11 41 41 H 1.08999 * 109.58972 * 246.16196 * 24 14 11 42 42 H 1.09003 * 117.49835 * 214.96642 * 25 9 7 43 43 H 1.08996 * 117.49885 * 359.97438 * 25 9 7 44 44 H 1.09000 * 117.49920 * 252.50799 * 26 25 9 45 45 H 1.09005 * 117.51675 * 107.47745 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0785 -1.1976 -0.1134 9 6 1.2595 -2.4942 0.1600 10 6 0.6799 -3.0849 -1.1269 11 16 1.8645 -2.8606 -2.4821 12 8 3.0719 -3.5589 -2.2099 13 8 1.8824 -1.5055 -2.9097 14 7 1.1961 -3.6817 -3.7555 15 6 1.5020 -5.1021 -3.9737 16 6 2.0041 -5.2833 -5.4096 17 6 0.9744 -4.7054 -6.3832 18 6 0.8017 -3.2084 -6.1166 19 1 1.7616 -2.7051 -6.2324 20 6 -0.2040 -2.6252 -7.1112 21 6 0.3581 -2.7177 -8.5064 22 7 -0.3581 -2.2614 -9.5530 23 8 1.4549 -3.2028 -8.6874 24 6 0.2861 -3.0036 -4.6886 25 6 1.7653 -3.4731 1.2215 26 6 0.4656 -2.6995 1.4517 27 1 -0.4850 0.8368 -0.0736 28 1 -0.2529 -2.5770 -1.3719 29 1 0.4879 -4.1483 -0.9843 30 1 2.2742 -5.4213 -3.2736 31 1 0.6019 -5.6974 -3.8211 32 1 2.9529 -4.7611 -5.5320 33 1 2.1434 -6.3448 -5.6150 34 1 0.0193 -5.2117 -6.2435 35 1 1.3181 -4.8548 -7.4068 36 1 -0.3946 -1.5807 -6.8648 37 1 -1.1363 -3.1874 -7.0571 38 1 -1.2351 -1.8732 -9.4082 39 1 0.0039 -2.3206 -10.4510 40 1 0.2559 -1.9382 -4.4603 41 1 -0.7139 -3.4275 -4.5969 42 1 1.6852 -4.5380 1.0030 43 1 2.6374 -3.1770 1.8044 44 1 0.4825 -1.8944 2.1863 45 1 -0.4698 -3.2551 1.3846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363819549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:23 Heat of formation + Delta-G solvation = -99.213159 kcal Electronic energy + Delta-G solvation = -27785.763038 eV Core-core repulsion = 23930.499918 eV Total energy + Delta-G solvation = -3855.263120 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.98639 -38.05289 -36.69875 -36.12932 -34.84777 -33.88037 -33.21470 -32.03790 -31.60208 -28.13415 -27.60908 -25.47688 -24.28621 -22.60284 -21.18722 -20.83423 -19.89746 -19.47673 -18.16615 -17.45626 -16.97163 -16.87097 -16.33303 -15.52608 -15.33911 -15.01837 -14.70748 -14.54359 -14.12932 -13.90179 -13.78690 -13.67342 -13.29879 -13.11113 -12.91671 -12.17104 -12.15835 -12.07623 -11.77393 -11.30025 -11.10275 -11.05634 -10.97627 -10.90760 -10.83474 -10.78007 -10.52205 -10.44984 -10.32343 -10.28437 -10.07270 -9.95545 -9.79877 -9.67451 -8.95819 -8.62802 -8.50977 -8.06153 -6.14408 -4.28774 1.20325 2.48948 3.31878 3.36049 3.37472 3.45978 3.55574 4.41574 4.57434 4.73197 4.77245 4.85636 5.00778 5.05630 5.16150 5.19337 5.25749 5.32732 5.39742 5.46613 5.53514 5.63621 5.73663 5.82746 5.88741 5.91003 5.98565 6.09620 6.25654 6.31914 6.35083 6.37870 6.48451 6.53640 6.58325 6.64163 6.71685 6.95278 7.02087 7.10640 7.20903 7.40749 7.80195 8.08902 8.20819 8.79615 9.48132 10.93226 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015611 B = 0.004045 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.173390 B = 6919.673673 C = 7933.792610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.099 3.901 3 Si 0.889 3.111 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.543 4.543 8 H 0.068 0.932 9 C 0.051 3.949 10 C -0.560 4.560 11 S 2.623 3.377 12 O -0.972 6.972 13 O -0.940 6.940 14 N -1.013 6.013 15 C 0.116 3.884 16 C -0.129 4.129 17 C -0.115 4.115 18 C -0.086 4.086 19 H 0.085 0.915 20 C -0.140 4.140 21 C 0.517 3.483 22 N -0.861 5.861 23 O -0.537 6.537 24 C 0.123 3.877 25 C -0.205 4.205 26 C -0.145 4.145 27 H 0.265 0.735 28 H 0.126 0.874 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.401 0.599 39 H 0.399 0.601 40 H 0.097 0.903 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.797 -7.888 -14.437 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.109 4.109 3 Si 0.716 3.284 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.580 4.580 8 H 0.086 0.914 9 C 0.049 3.951 10 C -0.692 4.692 11 S 2.721 3.279 12 O -0.963 6.963 13 O -0.930 6.930 14 N -0.848 5.848 15 C -0.009 4.009 16 C -0.168 4.168 17 C -0.153 4.153 18 C -0.106 4.106 19 H 0.104 0.896 20 C -0.181 4.181 21 C 0.303 3.697 22 N -0.425 5.425 23 O -0.413 6.413 24 C -0.003 4.003 25 C -0.242 4.242 26 C -0.184 4.184 27 H 0.075 0.925 28 H 0.144 0.856 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.229 0.771 39 H 0.229 0.771 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.420 -7.655 -14.329 17.126 hybrid contribution -0.777 0.814 -0.109 1.130 sum -6.196 -6.841 -14.438 17.136 Atomic orbital electron populations 1.69945 1.06181 1.27512 1.46564 1.24876 0.94705 0.99216 0.92057 0.86668 0.80124 0.82353 0.79272 1.19140 1.20985 1.19912 1.20561 0.93644 0.88832 1.55003 0.91371 1.18172 0.98687 0.93962 0.84292 1.30026 1.16589 1.06156 1.16447 1.04737 0.75618 0.73490 0.74092 1.93458 1.42484 1.75034 1.85329 1.93514 1.86276 1.33500 1.79695 1.58234 1.63029 1.20211 1.43350 1.21383 1.00383 0.81316 0.97863 1.21815 0.99607 1.00795 0.94543 1.21642 0.98873 0.94273 1.00488 1.21259 0.99226 0.97125 0.93004 0.89636 1.21721 1.00674 1.04166 0.91498 1.20777 0.85026 0.76490 0.87445 1.43951 1.22617 1.65869 1.10072 1.90732 1.20521 1.44001 1.86041 1.21379 0.92230 0.98546 0.88117 1.23123 0.98675 0.95590 1.06801 1.22528 0.92390 1.01104 1.02340 0.92540 0.85574 0.88738 0.89068 0.92109 0.91318 0.91251 0.92599 0.90207 0.88165 0.88538 0.77108 0.77124 0.88504 0.91896 0.91274 0.89708 0.89665 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.94 12.96 55.43 0.72 -23.23 16 2 C 0.10 2.73 5.39 -17.82 -0.10 2.63 16 3 Si 0.89 21.86 29.55 -169.99 -5.02 16.84 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.54 -15.05 6.89 -34.44 -0.24 -15.29 16 8 H 0.07 1.94 7.82 -52.48 -0.41 1.53 16 9 C 0.05 1.25 1.64 -155.66 -0.26 1.00 16 10 C -0.56 -11.92 6.29 37.16 0.23 -11.68 16 11 S 2.62 56.66 4.63 -107.50 -0.50 56.16 16 12 O -0.97 -23.04 16.59 -57.54 -0.95 -23.99 16 13 O -0.94 -23.45 15.72 -57.54 -0.90 -24.36 16 14 N -1.01 -16.61 3.22 -113.52 -0.37 -16.97 16 15 C 0.12 1.61 6.43 -3.71 -0.02 1.59 16 16 C -0.13 -1.65 6.08 -26.61 -0.16 -1.81 16 17 C -0.12 -1.38 4.92 -26.69 -0.13 -1.51 16 18 C -0.09 -1.09 1.98 -90.50 -0.18 -1.27 16 19 H 0.09 1.32 7.96 -51.93 -0.41 0.91 16 20 C -0.14 -1.27 5.18 -27.88 -0.14 -1.41 16 21 C 0.52 5.31 7.81 -10.99 -0.09 5.22 16 22 N -0.86 -5.30 8.87 31.22 0.28 -5.02 16 23 O -0.54 -7.85 14.81 5.56 0.08 -7.77 16 24 C 0.12 1.71 5.72 -3.71 -0.02 1.69 16 25 C -0.20 -4.50 9.88 -26.73 -0.26 -4.76 16 26 C -0.14 -3.32 9.50 -26.73 -0.25 -3.57 16 27 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 28 H 0.13 2.69 8.14 -51.93 -0.42 2.27 16 29 H 0.09 1.69 7.95 -51.92 -0.41 1.27 16 30 H 0.09 1.34 6.86 -51.93 -0.36 0.98 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.03 5.94 -51.93 -0.31 0.72 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.40 1.24 8.83 -40.82 -0.36 0.88 16 39 H 0.40 2.17 8.93 -40.82 -0.36 1.80 16 40 H 0.10 1.47 6.86 -51.93 -0.36 1.12 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 43 H 0.08 1.85 8.14 -51.93 -0.42 1.42 16 44 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 45 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 372.47 15.07 5.61 5.61 Total: -1.00 -35.65 372.47 -9.86 -45.52 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -7.19 Total: 6.38 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: -1.62 Total: -29.17 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.63 Total: -45.22 kcal Atomic # 8 Polarization: -54.34 SS G_CDS: -1.78 Total: -56.12 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 56.66 SS G_CDS: -0.50 Total: 56.16 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.65 -9.86 -45.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363819549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.697 kcal (2) G-P(sol) polarization free energy of solvation -35.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds