Wall clock time and date at job start Tue Mar 31 2020 05:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.50700 * 109.47412 * 164.99847 * 18 17 14 20 20 O 1.21313 * 119.99757 * 359.97438 * 19 18 17 21 21 C 1.46670 * 120.00092 * 179.97438 * 19 18 17 22 22 C 1.41553 * 126.47579 * 359.69564 * 21 19 18 23 23 N 1.30374 * 107.98366 * 179.81202 * 22 21 19 24 24 N 1.39911 * 109.00329 * 0.44499 * 23 22 21 25 25 C 1.46502 * 125.70253 * 179.68056 * 24 23 22 26 26 C 1.34126 * 108.59536 * 359.70854 * 24 23 22 27 27 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 29 29 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 32 32 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 33 33 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 34 34 H 0.97005 * 120.00537 * 244.99777 * 17 14 12 35 35 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 36 36 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 37 37 H 1.07996 * 126.00891 * 359.95592 * 22 21 19 38 38 H 1.09006 * 109.46646 * 270.03576 * 25 24 23 39 39 H 1.08995 * 109.47500 * 30.03284 * 25 24 23 40 40 H 1.08994 * 109.47352 * 150.03988 * 25 24 23 41 41 H 1.07996 * 126.31656 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6167 0.7951 5.4204 20 8 0.8863 1.9759 5.4888 21 6 -0.2291 0.1754 6.4459 22 6 -0.6325 -1.1805 6.4975 23 7 -1.3720 -1.3404 7.5592 24 7 -1.4861 -0.1145 8.2238 25 6 -2.2415 0.1227 9.4564 26 6 -0.7887 0.8074 7.5434 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7088 1.1611 -3.4845 31 1 2.4158 -2.7376 0.9718 32 1 1.6238 -2.2851 2.5003 33 1 0.6905 -2.3002 0.9847 34 1 1.9053 1.7753 3.4681 35 1 0.3187 -0.4565 3.7178 36 1 1.7669 -0.8422 4.6782 37 1 -0.3714 -1.9481 5.7841 38 1 -3.2647 0.4041 9.2069 39 1 -2.2510 -0.7865 10.0574 40 1 -1.7711 0.9271 10.0217 41 1 -0.6836 1.8503 7.8034 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364050210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:39 Heat of formation + Delta-G solvation = -25.154742 kcal Electronic energy + Delta-G solvation = -26452.725981 eV Core-core repulsion = 22497.133931 eV Total energy + Delta-G solvation = -3955.592050 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.68253 -39.15622 -36.64268 -36.15484 -35.19635 -34.50840 -33.85321 -32.55647 -30.86503 -29.08264 -28.54206 -26.41085 -25.57054 -25.10387 -22.85229 -21.34695 -20.79991 -19.88794 -18.90374 -17.74072 -17.05687 -16.78089 -16.56247 -16.10053 -15.92795 -15.34969 -15.23693 -15.01050 -14.68950 -14.43575 -13.89883 -13.45289 -13.33378 -13.25181 -13.12240 -13.01310 -12.84667 -12.66214 -12.00595 -11.72036 -11.62648 -11.46117 -11.33161 -11.30280 -11.20741 -10.94933 -10.79266 -10.46051 -10.24257 -10.01190 -10.00148 -9.92612 -9.38075 -9.21824 -9.05734 -8.42685 -7.96605 -6.04571 -4.10980 0.98588 1.20922 1.70540 1.95101 2.89851 3.31496 3.37940 3.40058 3.46760 3.78458 4.14490 4.23284 4.34035 4.42821 4.60568 4.66910 4.88535 4.91878 5.00159 5.08514 5.21235 5.26765 5.31421 5.41940 5.57864 5.92463 6.08556 6.12941 6.36120 6.37273 6.64214 6.79411 6.81250 7.04458 7.13666 7.20014 7.45068 7.52137 7.66232 7.81989 8.07064 8.30372 8.91345 9.54717 11.01158 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.021464 B = 0.002938 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.196889 B = 9529.192663 C = 9900.846215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.267 3.733 3 H 0.060 0.940 4 C -0.519 4.519 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.287 1.287 12 N -0.990 5.990 13 C 0.107 3.893 14 S 2.782 3.218 15 O -0.996 6.996 16 O -0.970 6.970 17 N -1.127 6.127 18 C 0.080 3.920 19 C 0.432 3.568 20 O -0.462 6.462 21 C -0.322 4.322 22 C 0.096 3.904 23 N -0.299 5.299 24 N -0.364 5.364 25 C 0.095 3.905 26 C 0.130 3.870 27 H 0.034 0.966 28 H 0.011 0.989 29 H 0.093 0.907 30 H 0.263 0.737 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.420 0.580 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.198 0.802 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.088 -2.294 22.131 23.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.212 1.212 12 N -0.833 5.833 13 C -0.039 4.039 14 S 2.790 3.210 15 O -0.979 6.979 16 O -0.954 6.954 17 N -0.888 5.888 18 C -0.048 4.048 19 C 0.309 3.691 20 O -0.337 6.337 21 C -0.335 4.335 22 C -0.092 4.092 23 N -0.119 5.119 24 N -0.141 5.141 25 C -0.046 4.046 26 C -0.021 4.021 27 H 0.053 0.947 28 H 0.030 0.970 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.255 0.745 35 H 0.118 0.882 36 H 0.128 0.872 37 H 0.215 0.785 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -7.834 -2.515 22.872 24.307 hybrid contribution 0.155 0.441 -1.292 1.374 sum -7.679 -2.073 21.580 22.999 Atomic orbital electron populations 1.22122 0.98277 0.99678 1.00702 1.18742 0.91276 0.93068 0.80453 0.92272 1.21333 1.31508 1.12991 0.90019 0.91919 1.24914 0.94982 0.95034 0.99009 1.69863 1.36548 1.22759 1.23745 0.86497 0.78650 0.79940 0.82304 1.20583 1.19891 1.21238 1.57717 1.70055 1.19760 1.35776 1.21184 1.01882 0.82188 0.98658 1.01916 0.73557 0.73149 0.72359 1.93533 1.69039 1.60770 1.74568 1.93624 1.74111 1.55971 1.71670 1.56108 1.62147 1.18183 1.52349 1.21408 0.97063 0.94501 0.91802 1.21392 0.76231 0.87978 0.83504 1.90521 1.51732 1.17282 1.74194 1.20841 1.14357 0.95459 1.02870 1.24296 0.93790 0.95877 0.95242 1.77198 1.22901 1.02420 1.09351 1.48477 1.38044 1.06516 1.21111 1.22030 0.96087 1.04040 0.82448 1.23240 0.91123 0.96295 0.91483 0.94734 0.96997 0.88893 0.92725 0.93162 0.93364 0.90873 0.74468 0.88195 0.87225 0.78510 0.90035 0.88705 0.88964 0.79453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 8.95 37.16 0.33 -2.96 16 2 C 0.27 6.47 2.62 -69.09 -0.18 6.29 16 3 H 0.06 1.60 6.91 -51.92 -0.36 1.25 16 4 C -0.52 -13.88 8.37 -34.44 -0.29 -14.17 16 5 H 0.06 1.67 7.65 -52.49 -0.40 1.27 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.81 11.32 55.43 0.63 -24.18 16 8 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.99 -19.91 3.12 -115.86 -0.36 -20.27 16 13 C 0.11 1.78 9.53 59.85 0.57 2.36 16 14 S 2.78 54.20 6.09 -107.50 -0.66 53.54 16 15 O -1.00 -20.12 16.68 -57.17 -0.95 -21.07 16 16 O -0.97 -22.93 16.70 -57.17 -0.95 -23.88 16 17 N -1.13 -17.45 5.99 -11.65 -0.07 -17.52 16 18 C 0.08 0.96 6.21 -5.19 -0.03 0.93 16 19 C 0.43 5.17 7.20 -30.91 -0.22 4.95 16 20 O -0.46 -6.73 16.28 5.53 0.09 -6.64 16 21 C -0.32 -3.21 6.11 -105.15 -0.64 -3.85 16 22 C 0.10 0.86 11.55 -16.91 -0.20 0.67 16 23 N -0.30 -2.96 12.49 30.91 0.39 -2.58 16 24 N -0.36 -2.84 3.97 -67.52 -0.27 -3.11 16 25 C 0.09 0.31 11.44 59.85 0.68 1.00 16 26 C 0.13 1.08 11.30 -16.47 -0.19 0.89 16 27 H 0.03 0.71 6.66 -51.93 -0.35 0.36 16 28 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.62 7.79 -51.93 -0.40 0.22 16 33 H 0.07 1.16 6.43 -51.93 -0.33 0.83 16 34 H 0.42 6.48 7.70 -34.47 -0.27 6.21 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.11 1.14 7.75 -51.93 -0.40 0.74 16 37 H 0.20 1.17 8.04 -52.49 -0.42 0.75 16 38 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 39 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 41 H 0.19 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 362.29 15.07 5.46 5.46 Total: -1.00 -36.52 362.29 -7.32 -43.83 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -5.34 Total: 2.60 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -0.25 Total: -2.30 kcal Atomic # 7 Polarization: -67.97 SS G_CDS: 0.31 Total: -67.66 kcal Atomic # 8 Polarization: -49.78 SS G_CDS: -1.82 Total: -51.60 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 54.20 SS G_CDS: -0.66 Total: 53.54 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.52 -7.32 -43.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364050210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.680 kcal (2) G-P(sol) polarization free energy of solvation -36.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds