Wall clock time and date at job start Tue Mar 31 2020 05:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99726 * 2 1 4 4 C 1.53003 * 109.47254 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46992 * 65.00088 * 4 3 2 6 6 C 1.46499 * 119.99897 * 275.00053 * 5 4 3 7 7 C 1.50697 * 109.47325 * 279.99436 * 6 5 4 8 8 H 1.08003 * 119.99862 * 4.26069 * 7 6 5 9 9 C 1.37882 * 120.00564 * 184.26311 * 7 6 5 10 10 N 1.31515 * 119.99160 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00383 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47034 * 59.99817 * 11 9 7 13 13 H 1.48499 * 109.47108 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47142 * 299.99902 * 11 9 7 15 15 S 1.65594 * 120.00079 * 95.00322 * 5 4 3 16 16 O 1.42103 * 106.40010 * 330.08432 * 15 5 4 17 17 O 1.42102 * 106.40116 * 197.17174 * 15 5 4 18 18 N 1.65593 * 107.22031 * 83.62473 * 15 5 4 19 19 C 1.46503 * 119.99643 * 65.21904 * 18 15 5 20 20 C 1.50707 * 109.47161 * 165.46720 * 19 18 15 21 21 C 1.38382 * 120.00131 * 94.99607 * 20 19 18 22 22 N 1.32128 * 119.99771 * 179.97438 * 21 20 19 23 23 C 1.32151 * 120.00133 * 359.97438 * 22 21 20 24 24 C 1.38350 * 120.00148 * 0.26118 * 23 22 21 25 25 N 1.32129 * 119.99900 * 274.98009 * 20 19 18 26 26 H 1.08999 * 109.46964 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47142 * 299.99847 * 1 2 3 28 28 H 1.08996 * 109.46969 * 60.00365 * 1 2 3 29 29 H 1.08997 * 109.47091 * 59.99926 * 3 2 1 30 30 H 1.08998 * 109.47054 * 299.99875 * 3 2 1 31 31 H 1.09000 * 109.46680 * 305.00356 * 4 3 2 32 32 H 1.08994 * 109.47489 * 185.00335 * 4 3 2 33 33 H 1.09004 * 109.47165 * 39.99199 * 6 5 4 34 34 H 1.08999 * 109.47070 * 159.99165 * 6 5 4 35 35 H 0.97006 * 119.99528 * 179.97438 * 10 9 7 36 36 H 0.96996 * 120.00184 * 245.21706 * 18 15 5 37 37 H 1.08997 * 109.47298 * 45.46731 * 19 18 15 38 38 H 1.09000 * 109.46948 * 285.46462 * 19 18 15 39 39 H 1.08001 * 120.00537 * 0.02562 * 21 20 19 40 40 H 1.07994 * 120.00169 * 179.97438 * 23 22 21 41 41 H 1.07994 * 119.99957 * 179.72602 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5642 -1.2509 6 6 4.0015 -0.8953 -1.3758 7 6 5.2434 -1.4350 -0.7144 8 1 5.9089 -0.7666 -0.1882 9 6 5.5301 -2.7820 -0.7809 10 7 4.7195 -3.5959 -1.4213 11 14 7.0698 -3.4509 0.0383 12 1 7.0188 -3.1665 1.4950 13 1 7.1480 -4.9180 -0.1777 14 1 8.2670 -2.7997 -0.5515 15 16 4.4474 1.5123 -2.5244 16 8 3.7046 2.7194 -2.4219 17 8 4.4219 0.6795 -3.6755 18 7 6.0336 1.9166 -2.2745 19 6 7.0655 0.8767 -2.2887 20 6 8.4245 1.5191 -2.3970 21 6 9.1630 1.7727 -1.2545 22 7 10.3547 2.3354 -1.3495 23 6 10.8416 2.6555 -2.5356 24 6 10.1013 2.4064 -3.6775 25 7 8.9111 1.8398 -3.5828 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.8507 0.5687 0.8427 32 1 3.9784 2.1767 0.0903 33 1 3.1201 -1.3164 -0.8922 34 1 4.0032 -1.1697 -2.4307 35 1 4.9213 -4.5435 -1.4684 36 1 6.2796 2.8418 -2.1188 37 1 6.9059 0.2181 -3.1424 38 1 7.0100 0.2972 -1.3672 39 1 8.7657 1.5100 -0.2852 40 1 11.8154 3.1158 -2.6133 41 1 10.4973 2.6720 -4.6464 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365748448.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:26 Heat of formation + Delta-G solvation = -66.157774 kcal Electronic energy + Delta-G solvation = -27201.499686 eV Core-core repulsion = 23244.129611 eV Total energy + Delta-G solvation = -3957.370075 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.12603 -37.71061 -36.67256 -35.61813 -35.28828 -35.19787 -34.01986 -32.56759 -31.40622 -29.47117 -26.83090 -26.49686 -25.64808 -24.62934 -22.83855 -22.63638 -21.75148 -18.95005 -17.67622 -17.45123 -17.14714 -16.92505 -16.51675 -16.09176 -15.84259 -15.64331 -15.26581 -14.90613 -14.60017 -14.45163 -14.25538 -13.62782 -13.38261 -13.04161 -12.71946 -12.51161 -12.31781 -12.02166 -11.87988 -11.66298 -11.64608 -11.55192 -11.42521 -11.21621 -11.19598 -11.06944 -10.88068 -10.62989 -10.38508 -10.06237 -9.80298 -9.41934 -9.27333 -9.14516 -9.10480 -8.44082 -8.01336 -6.06354 -4.12619 0.60881 1.02384 1.31551 3.25923 3.31606 3.33524 3.42021 3.71459 3.96295 4.14297 4.19189 4.19645 4.37506 4.39867 4.70705 5.02721 5.13207 5.17851 5.27288 5.35372 5.38710 5.45631 5.56244 5.67332 5.72099 5.78909 5.81038 5.93727 5.96699 6.15923 6.30735 6.34293 6.58279 7.17078 7.21087 7.49200 7.56303 7.58574 7.70827 7.79081 7.92713 8.22548 8.90724 9.51598 11.01522 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.010407 B = 0.005235 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.864444 B = 5346.925955 C = 7106.227131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.042 3.958 4 C 0.137 3.863 5 N -0.983 5.983 6 C 0.242 3.758 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.067 3.933 10 N -0.884 5.884 11 Si 0.887 3.113 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.276 1.276 15 S 2.783 3.217 16 O -1.001 7.001 17 O -0.972 6.972 18 N -1.125 6.125 19 C 0.172 3.828 20 C 0.080 3.920 21 C 0.065 3.935 22 N -0.440 5.440 23 C 0.043 3.957 24 C 0.048 3.952 25 N -0.423 5.423 26 H 0.083 0.917 27 H 0.033 0.967 28 H 0.035 0.965 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.264 0.736 36 H 0.406 0.594 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.174 0.826 40 H 0.168 0.832 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.368 11.996 1.657 12.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.036 4.036 4 C 0.010 3.990 5 N -0.825 5.825 6 C 0.120 3.880 7 C -0.580 4.580 8 H 0.079 0.921 9 C -0.136 4.136 10 N -0.522 5.522 11 Si 0.714 3.286 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.202 1.202 15 S 2.791 3.209 16 O -0.985 6.985 17 O -0.955 6.955 18 N -0.883 5.883 19 C 0.045 3.955 20 C -0.062 4.062 21 C -0.095 4.095 22 N -0.154 5.154 23 C -0.117 4.117 24 C -0.112 4.112 25 N -0.139 5.139 26 H 0.101 0.899 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.237 0.763 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.191 0.809 40 H 0.185 0.815 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.848 11.646 0.809 12.292 hybrid contribution 1.139 0.055 0.830 1.410 sum 4.987 11.700 1.639 12.824 Atomic orbital electron populations 1.22697 0.82415 1.02419 0.99093 1.88104 1.18387 1.27024 1.95152 1.23113 0.95399 0.85209 0.99928 1.21061 0.91381 0.97510 0.89090 1.57669 1.78319 1.19436 1.27088 1.19345 0.98249 0.71287 0.99100 1.21481 1.08322 0.92978 1.35190 0.92086 1.24919 0.96563 0.96957 0.95204 1.69929 1.36684 1.04269 1.41287 0.86755 0.83559 0.78236 0.80006 1.20174 1.21255 1.20196 1.01864 0.72441 0.72420 0.74149 1.93548 1.69441 1.47722 1.87766 1.93593 1.86063 1.68512 1.47317 1.56027 1.25630 1.15719 1.90927 1.20265 0.80472 0.88700 1.06072 1.22466 0.98013 0.96221 0.89496 1.23769 0.90669 0.94695 1.00388 1.68489 1.11947 1.08004 1.26985 1.23781 1.01101 0.97761 0.89088 1.23834 0.91157 0.95680 1.00529 1.68375 1.11860 1.06896 1.26763 0.89870 0.94827 0.94625 0.93276 0.93070 0.88968 0.90538 0.92716 0.92963 0.92593 0.76270 0.88018 0.87410 0.80866 0.81482 0.81370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.64 8.99 -35.23 -0.32 -6.96 16 3 C 0.04 0.67 6.28 37.16 0.23 0.90 16 4 C 0.14 2.24 5.75 -4.04 -0.02 2.22 16 5 N -0.98 -19.31 2.83 -115.66 -0.33 -19.63 16 6 C 0.24 5.82 5.32 -5.20 -0.03 5.80 16 7 C -0.54 -13.29 8.51 -34.44 -0.29 -13.58 16 8 H 0.06 1.38 6.45 -52.48 -0.34 1.04 16 9 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.88 -24.87 13.29 55.43 0.74 -24.13 16 11 Si 0.89 19.98 29.54 -169.99 -5.02 14.96 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 13 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 15 S 2.78 53.42 6.07 -107.50 -0.65 52.77 16 16 O -1.00 -19.61 17.17 -57.17 -0.98 -20.59 16 17 O -0.97 -22.53 16.01 -57.17 -0.92 -23.45 16 18 N -1.13 -17.67 6.05 -11.65 -0.07 -17.74 16 19 C 0.17 2.81 6.53 -5.19 -0.03 2.78 16 20 C 0.08 1.16 6.18 -82.41 -0.51 0.65 16 21 C 0.07 0.85 10.86 -17.37 -0.19 0.66 16 22 N -0.44 -5.58 10.50 -13.06 -0.14 -5.71 16 23 C 0.04 0.44 11.22 -17.37 -0.20 0.24 16 24 C 0.05 0.52 11.23 -17.37 -0.19 0.33 16 25 N -0.42 -6.14 10.42 -9.28 -0.10 -6.24 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.84 7.97 -51.93 -0.41 0.43 16 31 H 0.09 1.53 8.09 -51.93 -0.42 1.11 16 32 H 0.08 1.02 7.78 -51.93 -0.40 0.62 16 33 H 0.05 1.42 6.56 -51.93 -0.34 1.08 16 34 H 0.05 1.42 6.77 -51.93 -0.35 1.06 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.41 5.35 8.64 -34.46 -0.30 5.05 16 37 H 0.10 1.90 7.76 -51.93 -0.40 1.50 16 38 H 0.11 1.78 5.76 -51.93 -0.30 1.49 16 39 H 0.17 1.93 8.06 -52.49 -0.42 1.51 16 40 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -33.74 361.38 -7.92 -41.66 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.36 Total: 6.42 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -0.22 Total: 3.20 kcal Atomic # 7 Polarization: -73.57 SS G_CDS: 0.10 Total: -73.47 kcal Atomic # 8 Polarization: -48.78 SS G_CDS: -2.21 Total: -50.99 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 53.42 SS G_CDS: -0.65 Total: 52.77 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.74 -7.92 -41.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365748448.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.496 kcal (2) G-P(sol) polarization free energy of solvation -33.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds