Wall clock time and date at job start Tue Mar 31 2020 05:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 119.99789 * 2 1 4 4 C 1.52999 * 109.47082 * 270.00076 * 3 2 1 5 5 H 1.08996 * 109.47506 * 59.99771 * 4 3 2 6 6 O 1.42911 * 109.47066 * 300.00040 * 4 3 2 7 7 C 1.53000 * 109.47145 * 180.02562 * 4 3 2 8 8 N 1.46504 * 109.47080 * 184.99828 * 7 4 3 9 9 C 1.36936 * 119.99788 * 179.97438 * 8 7 4 10 10 H 1.07990 * 120.00471 * 0.02562 * 9 8 7 11 11 C 1.38817 * 119.99659 * 179.97438 * 9 8 7 12 12 N 1.31621 * 120.00114 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99980 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47313 * 60.00020 * 13 11 9 15 15 H 1.48496 * 109.47508 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47321 * 300.00163 * 13 11 9 17 17 C 1.34778 * 120.00177 * 179.97438 * 2 1 3 18 18 O 1.21475 * 120.00139 * 177.02334 * 17 2 1 19 19 C 1.48451 * 119.99802 * 357.02026 * 17 2 1 20 20 C 1.39537 * 120.55241 * 186.70006 * 19 17 2 21 21 C 1.38756 * 118.26845 * 179.97438 * 20 19 17 22 22 C 1.50696 * 120.42977 * 180.02562 * 21 20 19 23 23 F 1.39905 * 109.47590 * 210.00678 * 22 21 20 24 24 F 1.39902 * 109.46940 * 330.00471 * 22 21 20 25 25 N 1.32207 * 119.14648 * 0.02562 * 21 20 19 26 26 C 1.31883 * 121.03783 * 359.97438 * 25 21 20 27 27 N 1.31587 * 121.91322 * 359.71074 * 26 25 21 28 28 H 1.08996 * 109.47285 * 96.02802 * 1 2 3 29 29 H 1.09006 * 109.47478 * 216.03031 * 1 2 3 30 30 H 1.09007 * 109.47599 * 336.02744 * 1 2 3 31 31 H 1.09003 * 109.47467 * 150.00222 * 3 2 1 32 32 H 1.09004 * 109.47480 * 29.99896 * 3 2 1 33 33 H 0.96699 * 113.99349 * 300.00137 * 6 4 3 34 34 H 1.09000 * 109.47043 * 304.99750 * 7 4 3 35 35 H 1.08997 * 109.47229 * 64.99980 * 7 4 3 36 36 H 0.96999 * 120.00132 * 359.97438 * 8 7 4 37 37 H 0.97003 * 120.00090 * 180.02562 * 12 11 9 38 38 H 1.07997 * 120.86585 * 359.97438 * 20 19 17 39 39 H 1.09004 * 109.46982 * 90.00620 * 22 21 20 40 40 H 1.07996 * 119.04036 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 1 1.5000 1.8407 -1.9564 6 8 3.2247 0.7145 -2.1162 7 6 3.2179 3.0351 -1.4425 8 7 3.3578 3.5183 -2.8185 9 6 4.0121 4.6951 -3.0677 10 1 4.4252 5.2669 -2.2501 11 6 4.1451 5.1526 -4.3715 12 7 3.6420 4.4555 -5.3682 13 14 5.0369 6.7584 -4.7115 14 1 6.4352 6.6615 -4.2209 15 1 5.0418 7.0222 -6.1728 16 1 4.3423 7.8684 -4.0110 17 6 2.1389 -1.1672 0.0005 18 8 3.3524 -1.1679 -0.0541 19 6 1.3981 -2.4519 0.0679 20 6 2.0834 -3.6592 0.2094 21 6 1.3437 -4.8317 0.2679 22 6 2.0337 -6.1626 0.4207 23 9 1.2711 -7.1575 -0.2004 24 9 3.2979 -6.1037 -0.1757 25 7 0.0257 -4.7662 0.1877 26 6 -0.5908 -3.6080 0.0543 27 7 0.0692 -2.4709 0.0006 28 1 -0.3633 -0.1079 -1.0219 29 1 -0.3634 -0.8311 0.6045 30 1 -0.3634 0.9391 0.4176 31 1 3.1499 1.1385 0.5138 32 1 1.6083 2.0284 0.5138 33 1 4.0872 0.5461 -1.7126 34 1 2.6709 3.7709 -0.8530 35 1 4.2061 2.8837 -1.0084 36 1 2.9870 3.0045 -3.5530 37 1 3.7353 4.7750 -6.2793 38 1 3.1613 -3.6804 0.2717 39 1 2.1422 -6.3961 1.4799 40 1 -1.6688 -3.5920 -0.0076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486284366.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:51 Heat of formation + Delta-G solvation = -95.111145 kcal Electronic energy + Delta-G solvation = -27773.677411 eV Core-core repulsion = 23261.211437 eV Total energy + Delta-G solvation = -4512.465973 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.55215 -47.55618 -41.88174 -39.84889 -37.35021 -35.70082 -34.59640 -33.96882 -33.02744 -31.29850 -29.53852 -28.33154 -26.90480 -26.30317 -24.73716 -23.94872 -22.63980 -21.21093 -20.42936 -18.78435 -18.33824 -18.10662 -17.37208 -17.14886 -16.68083 -16.41188 -16.19643 -16.02857 -15.69254 -15.32109 -15.00374 -14.71337 -14.38682 -14.34311 -13.86962 -13.79670 -13.65487 -13.47181 -13.08142 -12.95337 -12.78036 -12.42441 -12.16986 -12.11668 -11.56656 -11.46630 -11.20918 -10.93855 -10.79057 -10.75765 -10.55782 -10.36343 -10.18048 -9.78242 -9.67621 -9.58935 -8.87730 -8.58615 -6.90771 -5.73135 -3.02800 -0.10825 0.10928 2.35430 2.46376 2.68454 3.19056 3.35676 3.43578 3.45315 3.49231 3.50894 3.52988 3.99098 4.23102 4.27612 4.36897 4.58291 4.70835 4.84419 4.93946 5.01200 5.12366 5.22560 5.39740 5.53111 5.59769 5.64971 5.71811 5.93034 5.97911 6.09510 6.23344 6.37255 6.52410 6.73560 7.07374 7.25184 7.69617 7.82640 8.19183 8.44994 9.56112 10.14079 10.49576 11.49203 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.023569 B = 0.002237 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.734753 B =12513.985937 C =13011.451026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.581 5.581 3 C 0.082 3.918 4 C 0.086 3.914 5 H 0.097 0.903 6 O -0.548 6.548 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.243 4.243 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.909 3.091 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.569 3.431 18 O -0.515 6.515 19 C 0.149 3.851 20 C -0.139 4.139 21 C 0.099 3.901 22 C 0.330 3.670 23 F -0.181 7.181 24 F -0.185 7.185 25 N -0.481 5.481 26 C 0.296 3.704 27 N -0.475 5.475 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.374 0.626 34 H 0.025 0.975 35 H 0.022 0.978 36 H 0.388 0.612 37 H 0.256 0.744 38 H 0.171 0.829 39 H 0.139 0.861 40 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.640 -20.947 18.236 29.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.312 5.312 3 C -0.041 4.041 4 C 0.025 3.975 5 H 0.115 0.885 6 O -0.353 6.353 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.375 4.375 10 H 0.087 0.913 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.354 3.646 18 O -0.390 6.390 19 C 0.001 3.999 20 C -0.162 4.162 21 C -0.050 4.050 22 C 0.276 3.724 23 F -0.162 7.162 24 F -0.167 7.167 25 N -0.195 5.195 26 C 0.008 3.992 27 N -0.192 5.192 28 H 0.079 0.921 29 H 0.124 0.876 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.222 0.778 34 H 0.043 0.957 35 H 0.039 0.961 36 H 0.223 0.777 37 H 0.066 0.934 38 H 0.188 0.812 39 H 0.156 0.844 40 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -10.394 -20.763 17.742 29.222 hybrid contribution 1.500 0.830 -0.277 1.737 sum -8.893 -19.933 17.466 27.955 Atomic orbital electron populations 1.22493 0.77884 1.03562 1.03460 1.47566 1.08028 1.05240 1.70345 1.22448 0.98310 0.84076 0.99238 1.22499 0.95893 0.88405 0.90674 0.88494 1.86559 1.33092 1.58869 1.56786 1.21234 0.96768 0.92389 0.89823 1.42243 1.68083 1.25286 1.01398 1.19172 1.28291 0.97839 0.92159 0.91301 1.24770 1.01492 0.99049 0.95621 1.69674 1.50224 1.39296 0.98649 0.86251 0.79536 0.83376 0.76893 1.21255 1.21664 1.21281 1.17566 0.86470 0.82433 0.78133 1.90788 1.12537 1.86193 1.49448 1.21797 0.89910 0.94824 0.93411 1.22673 1.04306 0.91735 0.97451 1.22221 0.91276 0.95536 0.96000 1.20051 0.74507 0.82138 0.95748 1.93069 1.75726 1.62143 1.85264 1.93080 1.40623 1.96428 1.86526 1.68009 1.09252 1.31157 1.11092 1.25277 1.01693 0.81651 0.90547 1.68940 1.08034 1.30334 1.11885 0.92102 0.87642 0.91651 0.89259 0.89025 0.77811 0.95745 0.96072 0.77738 0.93436 0.81153 0.84383 0.77164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 9.45 59.85 0.57 1.20 16 2 N -0.58 -6.94 2.83 -182.46 -0.52 -7.45 16 3 C 0.08 1.03 5.18 -4.04 -0.02 1.01 16 4 C 0.09 1.43 3.27 -26.73 -0.09 1.34 16 5 H 0.10 1.70 8.14 -51.93 -0.42 1.27 16 6 O -0.55 -10.37 12.03 -47.19 -0.57 -10.94 16 7 C 0.13 2.52 5.90 -4.04 -0.02 2.50 16 8 N -0.73 -18.98 5.55 -59.91 -0.33 -19.31 16 9 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 10 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 11 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 12 N -0.93 -29.01 13.06 55.49 0.72 -28.29 16 13 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 C 0.57 7.44 7.23 -12.05 -0.09 7.35 16 18 O -0.52 -7.92 14.64 -6.57 -0.10 -8.01 16 19 C 0.15 1.61 6.66 -82.63 -0.55 1.06 16 20 C -0.14 -1.31 9.06 -38.91 -0.35 -1.66 16 21 C 0.10 0.83 6.61 -82.24 -0.54 0.29 16 22 C 0.33 2.17 5.74 36.00 0.21 2.38 16 23 F -0.18 -1.59 17.09 2.25 0.04 -1.55 16 24 F -0.19 -1.53 16.56 2.25 0.04 -1.49 16 25 N -0.48 -4.15 10.08 -10.81 -0.11 -4.26 16 26 C 0.30 2.18 12.28 -92.26 -1.13 1.05 16 27 N -0.48 -4.30 6.20 -11.14 -0.07 -4.37 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.11 0.86 5.17 -52.26 -0.27 0.59 16 30 H 0.06 0.50 7.83 -51.92 -0.41 0.09 16 31 H 0.09 1.14 7.46 -51.93 -0.39 0.75 16 32 H 0.09 0.93 7.85 -51.93 -0.41 0.53 16 33 H 0.37 6.57 8.36 45.56 0.38 6.95 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.39 10.99 7.67 -40.82 -0.31 10.68 16 37 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 38 H 0.17 1.51 7.39 -52.49 -0.39 1.13 16 39 H 0.14 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.21 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 352.41 15.07 5.31 5.31 Total: -1.00 -35.83 352.41 -6.75 -42.58 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -3.87 Total: 11.14 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: -2.27 Total: 8.90 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: -0.30 Total: -63.68 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.66 Total: -18.95 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.08 Total: -3.04 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.83 -6.75 -42.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486284366.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.535 kcal (2) G-P(sol) polarization free energy of solvation -35.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds