Wall clock time and date at job start Tue Mar 31 2020 04:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38352 * 120.80792 * 2 1 4 4 C 1.39396 * 119.18242 * 180.28384 * 3 2 1 5 5 C 1.48040 * 119.59682 * 179.74583 * 4 3 2 6 6 O 1.21525 * 119.99833 * 359.72703 * 5 4 3 7 7 N 1.34781 * 120.00134 * 179.72621 * 5 4 3 8 8 C 1.47571 * 134.49423 * 180.02562 * 7 5 4 9 9 C 1.53946 * 86.11996 * 155.35733 * 8 7 5 10 10 O 1.42904 * 113.73883 * 269.15369 * 9 8 7 11 11 C 1.50701 * 113.74318 * 137.95533 * 9 8 7 12 12 H 1.08002 * 119.99761 * 1.91855 * 11 9 8 13 13 C 1.37871 * 119.99694 * 182.20418 * 11 9 8 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 9 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 9 16 16 H 1.48504 * 109.47266 * 60.00049 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47383 * 299.99456 * 15 13 11 19 19 C 1.47807 * 134.45550 * 359.86531 * 7 5 4 20 20 N 1.32824 * 120.80751 * 359.46995 * 4 3 2 21 21 C 1.31321 * 121.76279 * 0.25124 * 20 4 3 22 22 C 1.39698 * 120.80790 * 179.75880 * 2 1 3 23 23 C 1.48357 * 120.43290 * 359.95888 * 22 2 1 24 24 N 1.34081 * 126.68624 * 359.70840 * 23 22 2 25 25 N 1.28990 * 107.26546 * 179.83320 * 24 23 22 26 26 N 1.28723 * 108.95631 * 0.43667 * 25 24 23 27 27 H 0.97002 * 125.33619 * 179.75852 * 26 25 24 28 28 N 1.28876 * 109.32941 * 359.71941 * 26 25 24 29 29 H 1.08998 * 109.47451 * 270.24138 * 1 2 3 30 30 H 1.09001 * 109.47415 * 30.23957 * 1 2 3 31 31 H 1.08997 * 109.47414 * 150.23705 * 1 2 3 32 32 H 1.07994 * 120.40812 * 0.03211 * 3 2 1 33 33 H 1.09004 * 113.77444 * 41.05348 * 8 7 5 34 34 H 1.09004 * 113.87147 * 269.67091 * 8 7 5 35 35 H 0.96703 * 113.99734 * 178.06891 * 10 9 8 36 36 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 37 37 H 1.08997 * 113.77160 * 90.37973 * 19 7 5 38 38 H 1.09008 * 113.84085 * 318.92046 * 19 7 5 39 39 H 1.08001 * 119.63506 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2155 1.1883 0.0000 4 6 3.6089 1.1488 -0.0060 5 6 4.3763 2.4147 -0.0118 6 8 3.7912 3.4799 -0.0163 7 7 5.7238 2.3860 -0.0121 8 6 6.7802 3.4164 -0.0164 9 6 7.6806 2.3468 0.6280 10 8 7.6512 2.3548 2.0567 11 6 9.0798 2.3149 0.0693 12 1 9.3748 3.0250 -0.6891 13 6 9.9815 1.3754 0.5222 14 7 9.6223 0.5107 1.4457 15 14 11.7136 1.3307 -0.1759 16 1 12.3863 2.6287 0.0853 17 1 12.4807 0.2369 0.4727 18 1 11.6512 1.0913 -1.6401 19 6 6.7363 1.3092 -0.0052 20 7 4.2566 -0.0109 -0.0012 21 6 3.6189 -1.1588 0.0045 22 6 2.2224 -1.1998 0.0051 23 6 1.5086 -2.5004 0.0114 24 7 0.1807 -2.6853 0.0186 25 7 -0.0287 -3.9581 0.0188 26 7 1.1047 -4.5682 0.0214 27 1 1.2236 -5.5309 0.0254 28 7 2.0568 -3.6997 0.0169 29 1 -0.3634 0.0043 1.0276 30 1 -0.3634 0.8878 -0.5175 31 1 -0.3634 -0.8921 -0.5101 32 1 1.6955 2.1348 0.0005 33 1 6.5697 4.2643 0.6355 34 1 7.0997 3.7164 -1.0145 35 1 8.1926 1.6654 2.4650 36 1 10.2566 -0.1505 1.7640 37 1 7.0417 0.9870 -1.0006 38 1 6.4907 0.4778 0.6557 39 1 4.1801 -2.0815 0.0088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591911074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:32 Heat of formation + Delta-G solvation = 124.206225 kcal Electronic energy + Delta-G solvation = -27334.317664 eV Core-core repulsion = 23282.051191 eV Total energy + Delta-G solvation = -4052.266472 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.123 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.76355 -40.59521 -39.11214 -37.25790 -35.21802 -34.17057 -33.87702 -33.40480 -32.16367 -31.09722 -28.68033 -28.09105 -26.01109 -25.13822 -25.03497 -24.41476 -22.67745 -22.42412 -20.16694 -19.46752 -18.51072 -17.46642 -17.45389 -16.83320 -16.65500 -16.35875 -15.40840 -15.07904 -15.01597 -14.64335 -14.32677 -14.15697 -14.01273 -13.34316 -13.11803 -12.90516 -12.80308 -12.51885 -12.48452 -12.25094 -12.09627 -11.93755 -11.69085 -11.50002 -11.39309 -11.07142 -11.00480 -10.97372 -10.50563 -10.24524 -9.98942 -9.55441 -9.47854 -9.22749 -9.02583 -8.71434 -8.30430 -7.79987 -6.33229 -4.43160 0.17190 0.83964 1.14564 1.92622 1.94044 3.09402 3.19876 3.25393 3.26935 3.30295 3.45187 3.85119 3.99530 4.22404 4.26955 4.50139 4.65669 4.89531 4.91945 4.98623 5.11691 5.23102 5.38809 5.56289 5.62109 5.69197 5.74877 5.93948 6.05139 6.10349 6.18659 6.20723 6.41692 6.45834 6.67360 6.70594 6.96919 7.17672 7.68459 7.75454 7.83273 7.88266 8.41386 8.58777 8.68270 9.27150 9.48648 10.73532 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.015855 B = 0.003062 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.575771 B = 9143.558143 C =10574.088244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.004 4.004 3 C -0.123 4.123 4 C 0.121 3.879 5 C 0.574 3.426 6 O -0.558 6.558 7 N -0.606 5.606 8 C 0.111 3.889 9 C 0.233 3.767 10 O -0.573 6.573 11 C -0.537 4.537 12 H 0.070 0.930 13 C 0.073 3.927 14 N -0.896 5.896 15 Si 0.906 3.094 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.097 3.903 20 N -0.446 5.446 21 C 0.147 3.853 22 C -0.073 4.073 23 C 0.230 3.770 24 N -0.266 5.266 25 N -0.052 5.052 26 N -0.224 5.224 27 H 0.476 0.524 28 N -0.288 5.288 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.155 0.845 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.392 0.608 36 H 0.273 0.727 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.174 -10.669 -3.199 18.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.014 4.014 3 C -0.144 4.144 4 C -0.017 4.017 5 C 0.361 3.639 6 O -0.438 6.438 7 N -0.337 5.337 8 C -0.011 4.011 9 C 0.192 3.808 10 O -0.385 6.385 11 C -0.575 4.575 12 H 0.088 0.912 13 C -0.130 4.130 14 N -0.536 5.536 15 Si 0.734 3.266 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.025 4.025 20 N -0.156 5.156 21 C -0.016 4.016 22 C -0.079 4.079 23 C -0.050 4.050 24 N -0.139 5.139 25 N -0.047 5.047 26 N -0.070 5.070 27 H 0.331 0.669 28 N -0.139 5.139 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.173 0.827 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.246 0.754 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -15.600 -10.114 -3.172 18.860 hybrid contribution 0.856 -1.187 -0.269 1.488 sum -14.743 -11.301 -3.441 18.893 Atomic orbital electron populations 1.21186 0.88725 1.04789 1.03827 1.20329 0.97569 0.90797 0.92733 1.21972 0.93637 0.99210 0.99613 1.21558 0.91500 0.92694 0.95929 1.17433 0.81319 0.86860 0.78282 1.90728 1.69234 1.30281 1.53569 1.50136 1.02647 1.13686 1.67182 1.23558 0.83355 0.93823 1.00337 1.19921 0.91696 0.88899 0.80317 1.86049 1.73482 1.59883 1.19069 1.21433 0.95937 1.16939 1.23211 0.91176 1.25047 0.99295 0.94272 0.94348 1.69404 1.36301 1.18767 1.29088 0.86418 0.83073 0.77889 0.79269 1.19938 1.21071 1.19941 1.24336 0.83625 0.93369 1.01203 1.67985 1.39567 0.97410 1.10651 1.22987 0.89423 0.96856 0.92300 1.18379 0.93871 0.87252 1.08365 1.23384 0.87929 0.92234 1.01452 1.76131 1.14267 1.05294 1.18228 1.78924 1.10300 1.00951 1.14528 1.47722 1.01165 1.12392 1.45756 0.66925 1.75001 1.18228 0.98967 1.21739 0.89976 0.90793 0.88108 0.82736 0.90933 0.89302 0.75380 0.91715 0.90231 0.89851 0.81256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 9.27 36.00 0.33 -0.92 16 2 C 0.00 -0.06 5.94 -104.04 -0.62 -0.67 16 3 C -0.12 -1.80 9.32 -39.11 -0.36 -2.16 16 4 C 0.12 2.16 6.75 -82.99 -0.56 1.60 16 5 C 0.57 12.08 8.04 -12.24 -0.10 11.98 16 6 O -0.56 -12.63 17.04 5.34 0.09 -12.54 16 7 N -0.61 -13.23 3.61 -179.18 -0.65 -13.88 16 8 C 0.11 2.43 8.23 -2.97 -0.02 2.41 16 9 C 0.23 5.63 1.40 -90.86 -0.13 5.50 16 10 O -0.57 -14.83 13.48 -35.23 -0.48 -15.30 16 11 C -0.54 -13.46 8.61 -34.44 -0.30 -13.76 16 12 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 13 C 0.07 1.82 5.40 -17.82 -0.10 1.72 16 14 N -0.90 -22.68 11.21 55.43 0.62 -22.06 16 15 Si 0.91 19.45 29.54 -169.99 -5.02 14.43 16 16 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 19 C 0.10 2.15 7.00 -2.85 -0.02 2.13 16 20 N -0.45 -7.64 7.86 -9.55 -0.08 -7.72 16 21 C 0.15 2.06 10.86 -17.22 -0.19 1.87 16 22 C -0.07 -0.93 5.90 -104.64 -0.62 -1.55 16 23 C 0.23 2.66 7.82 -156.28 -1.22 1.44 16 24 N -0.27 -2.97 9.22 32.14 0.30 -2.67 16 25 N -0.05 -0.49 13.47 60.35 0.81 0.33 16 26 N -0.22 -1.57 7.90 60.35 0.48 -1.10 16 27 H 0.48 1.02 8.96 -340.36 -3.05 -2.04 16 28 N -0.29 -2.87 12.10 32.16 0.39 -2.48 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 31 H 0.10 1.02 5.30 -51.93 -0.28 0.74 16 32 H 0.15 2.10 7.63 -52.49 -0.40 1.70 16 33 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 34 H 0.09 1.77 8.09 -51.93 -0.42 1.35 16 35 H 0.39 10.21 6.61 45.56 0.30 10.51 16 36 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 37 H 0.08 1.73 8.09 -51.93 -0.42 1.31 16 38 H 0.08 1.91 7.19 -51.92 -0.37 1.54 16 39 H 0.17 2.05 7.89 -52.49 -0.41 1.63 16 LS Contribution 341.55 15.07 5.15 5.15 Total: -1.00 -30.73 341.55 -8.15 -38.87 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.86 Total: 9.37 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: -3.90 Total: 9.59 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 1.87 Total: -49.57 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.38 Total: -27.84 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.73 -8.15 -38.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591911074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.080 kcal (2) G-P(sol) polarization free energy of solvation -30.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds