Wall clock time and date at job start Tue Mar 31 2020 05:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48505 * 109.47087 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47042 * 120.00217 * 3 2 1 6 6 H 1.48503 * 109.47023 * 240.00446 * 3 2 1 7 7 C 1.40044 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00321 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99681 * 354.99925 * 9 7 2 11 11 N 1.34777 * 120.00313 * 175.00114 * 9 7 2 12 12 C 1.47077 * 120.87886 * 4.94953 * 11 9 7 13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9 14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11 15 15 C 1.38546 * 111.00021 * 172.60662 * 14 13 12 16 16 C 1.39744 * 120.48893 * 304.02193 * 15 14 13 17 17 C 1.38176 * 118.48818 * 179.79985 * 16 15 14 18 18 N 1.32418 * 119.29469 * 0.47647 * 17 16 15 19 19 C 1.32527 * 120.93858 * 359.74495 * 18 17 16 20 20 C 1.48412 * 119.17826 * 180.02562 * 19 18 17 21 21 N 1.34072 * 126.67579 * 180.02562 * 20 19 18 22 22 N 1.28986 * 107.26613 * 179.97438 * 21 20 19 23 23 N 1.28731 * 108.94893 * 359.97438 * 22 21 20 24 24 H 0.97002 * 125.34106 * 180.02562 * 23 22 21 25 25 N 1.28876 * 109.32506 * 359.73668 * 23 22 21 26 26 N 1.32551 * 121.64214 * 0.02562 * 19 18 17 27 27 C 1.46905 * 111.27013 * 296.75466 * 14 13 12 28 28 C 1.47076 * 120.88062 * 185.22734 * 11 9 7 29 29 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.62715 * 248.52147 * 12 11 9 31 31 H 1.09000 * 109.63081 * 9.10385 * 12 11 9 32 32 H 1.09001 * 109.64838 * 294.07883 * 13 12 11 33 33 H 1.08999 * 109.44526 * 173.95833 * 13 12 11 34 34 H 1.07994 * 120.75178 * 0.02562 * 16 15 14 35 35 H 1.08001 * 120.34897 * 180.21509 * 17 16 15 36 36 H 1.08994 * 109.49159 * 303.15220 * 27 14 13 37 37 H 1.08999 * 109.51460 * 183.07675 * 27 14 13 38 38 H 1.08999 * 109.63197 * 350.89564 * 28 11 9 39 39 H 1.09008 * 109.62635 * 111.48013 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2757 2.7464 -0.0006 5 1 3.0945 1.6963 1.2125 6 1 3.0944 1.6963 -1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0617 -2.4825 0.0918 11 7 1.9449 -3.6455 -0.1028 12 6 3.4155 -3.6728 -0.1066 13 6 3.8814 -4.6906 0.9466 14 7 3.2360 -5.9847 0.6885 15 6 3.7536 -6.9708 1.5127 16 6 5.1262 -7.2329 1.5290 17 6 5.5982 -8.2226 2.3698 18 7 4.7420 -8.8956 3.1231 19 6 3.4444 -8.6291 3.0841 20 6 2.5196 -9.4072 3.9455 21 7 1.1889 -9.2648 4.0251 22 7 0.7623 -10.1271 4.8844 23 7 1.7645 -10.7953 5.3387 24 1 1.7131 -11.5051 5.9979 25 7 2.8460 -10.3776 4.7760 26 7 2.9519 -7.6848 2.2949 27 6 1.7771 -5.8907 0.8322 28 6 1.2249 -4.9226 -0.2195 29 1 -0.4850 0.8400 0.0004 30 1 3.7736 -3.9711 -1.0920 31 1 3.8007 -2.6840 0.1423 32 1 3.6077 -4.3397 1.9417 33 1 4.9637 -4.8055 0.8864 34 1 5.8029 -6.6722 0.9014 35 1 6.6537 -8.4478 2.4090 36 1 1.5327 -5.5231 1.8288 37 1 1.3329 -6.8757 0.6888 38 1 0.1612 -4.7606 -0.0453 39 1 1.3766 -5.3387 -1.2156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592671621.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:48 Heat of formation + Delta-G solvation = 175.651990 kcal Electronic energy + Delta-G solvation = -27307.067661 eV Core-core repulsion = 23289.324796 eV Total energy + Delta-G solvation = -4017.742865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.73600 -41.38067 -38.96944 -36.86573 -34.74601 -34.26253 -33.84853 -32.77963 -32.44637 -31.28082 -30.58086 -27.30883 -26.12270 -25.89868 -24.86453 -23.70190 -23.01330 -22.18297 -20.98616 -19.65522 -19.10459 -17.86830 -17.46583 -17.44759 -16.58610 -15.93002 -15.74857 -15.33697 -15.06693 -14.64587 -14.43326 -14.28594 -14.21540 -14.06714 -13.91801 -13.49398 -12.59344 -12.54230 -12.01439 -11.66128 -11.58083 -11.45195 -11.38489 -11.32766 -11.25195 -11.13634 -10.98410 -10.88521 -10.81946 -10.71441 -10.28069 -10.09224 -9.83991 -9.45832 -8.89534 -8.51951 -7.64556 -7.31627 -6.24150 -4.70393 0.22054 0.90708 0.94328 1.86464 1.95040 2.88523 3.12139 3.17456 3.18984 3.26190 3.59870 3.75156 4.04200 4.37750 4.45527 4.49273 4.52076 4.61736 4.86726 5.02245 5.10790 5.24304 5.27979 5.37398 5.52846 5.56625 5.62550 5.80869 5.90793 5.98570 6.07914 6.11349 6.31880 6.43676 6.54944 6.61830 6.95423 7.01148 7.39544 7.50109 7.76901 7.94921 8.04875 8.27525 8.96842 9.36149 10.52302 10.70704 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.018851 B = 0.002739 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.945639 B =10219.996194 C =11010.474603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.560 3.440 10 O -0.574 6.574 11 N -0.647 5.647 12 C 0.128 3.872 13 C 0.044 3.956 14 N -0.466 5.466 15 C 0.370 3.630 16 C -0.231 4.231 17 C 0.164 3.836 18 N -0.514 5.514 19 C 0.422 3.578 20 C 0.232 3.768 21 N -0.227 5.227 22 N -0.051 5.051 23 N -0.228 5.228 24 H 0.477 0.523 25 N -0.252 5.252 26 N -0.518 5.518 27 C 0.053 3.947 28 C 0.121 3.879 29 H 0.270 0.730 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.156 0.844 35 H 0.177 0.823 36 H 0.057 0.943 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.122 -18.134 6.941 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.090 0.910 9 C 0.366 3.634 10 O -0.456 6.456 11 N -0.386 5.386 12 C 0.003 3.997 13 C -0.082 4.082 14 N -0.183 5.183 15 C 0.128 3.872 16 C -0.257 4.257 17 C 0.001 3.999 18 N -0.232 5.232 19 C 0.150 3.850 20 C -0.051 4.051 21 N -0.101 5.101 22 N -0.046 5.046 23 N -0.074 5.074 24 H 0.332 0.668 25 N -0.106 5.106 26 N -0.240 5.240 27 C -0.074 4.074 28 C -0.003 4.003 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.122 0.878 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.173 0.827 35 H 0.194 0.806 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.117 -18.684 7.226 22.442 hybrid contribution 1.399 0.939 0.316 1.714 sum 11.515 -17.745 7.542 22.458 Atomic orbital electron populations 1.69996 1.07087 1.27534 1.34858 1.25725 0.94623 1.00316 0.92581 0.86446 0.79863 0.81099 0.79445 1.20536 1.19257 1.19203 1.20904 0.93460 0.89212 1.54610 0.90988 1.18262 0.86954 0.82076 0.76134 1.90605 1.14344 1.85909 1.54781 1.48334 1.04462 1.06050 1.79729 1.21619 0.83207 0.98492 0.96375 1.22976 0.98565 0.86073 1.00566 1.58920 1.08846 1.05945 1.44550 1.20242 0.89591 0.91861 0.85486 1.22565 0.95828 1.03101 1.04226 1.23002 0.99775 0.88771 0.88361 1.68200 1.02264 1.28420 1.24365 1.18455 0.86323 0.89452 0.90729 1.22275 0.89558 0.95302 0.97936 1.76327 1.08132 1.14459 1.11229 1.79056 1.15454 1.02638 1.07460 1.47885 1.01387 1.27846 1.30322 0.66811 1.75082 1.11968 1.13174 1.10409 1.68194 1.40192 1.08704 1.06890 1.22572 0.83175 1.01343 1.00324 1.21323 0.98609 0.84098 0.96270 0.91932 0.92591 0.87829 0.92641 0.89484 0.82667 0.80594 0.92414 0.89114 0.88732 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.58 11.84 55.55 0.66 -21.93 16 2 C 0.09 2.38 5.50 -17.37 -0.10 2.28 16 3 Si 0.91 19.48 29.56 -169.99 -5.02 14.46 16 4 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.55 -14.72 8.86 -35.63 -0.32 -15.03 16 8 H 0.07 1.73 5.74 -52.49 -0.30 1.43 16 9 C 0.56 15.51 7.63 -12.99 -0.10 15.41 16 10 O -0.57 -18.32 14.49 5.20 0.08 -18.24 16 11 N -0.65 -14.21 3.00 -173.84 -0.52 -14.73 16 12 C 0.13 2.18 6.50 -3.36 -0.02 2.16 16 13 C 0.04 0.63 5.44 -3.46 -0.02 0.61 16 14 N -0.47 -6.88 4.65 -172.44 -0.80 -7.69 16 15 C 0.37 5.09 6.40 -154.86 -0.99 4.10 16 16 C -0.23 -2.35 9.25 -39.04 -0.36 -2.71 16 17 C 0.16 1.55 11.28 -17.32 -0.20 1.35 16 18 N -0.51 -6.47 10.33 -11.21 -0.12 -6.58 16 19 C 0.42 6.08 7.60 -156.99 -1.19 4.88 16 20 C 0.23 3.23 8.13 -156.28 -1.27 1.96 16 21 N -0.23 -3.32 12.52 32.15 0.40 -2.91 16 22 N -0.05 -0.58 13.47 60.35 0.81 0.23 16 23 N -0.23 -1.86 7.90 60.35 0.48 -1.38 16 24 H 0.48 1.27 8.96 -340.36 -3.05 -1.78 16 25 N -0.25 -2.86 12.37 32.17 0.40 -2.46 16 26 N -0.52 -7.95 8.73 -10.36 -0.09 -8.04 16 27 C 0.05 0.90 4.84 -3.70 -0.02 0.88 16 28 C 0.12 2.37 6.61 -3.60 -0.02 2.35 16 29 H 0.27 7.24 8.29 -40.82 -0.34 6.91 16 30 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 31 H 0.10 1.80 5.46 -51.93 -0.28 1.52 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.90 6.71 -51.93 -0.35 0.55 16 34 H 0.16 1.15 7.23 -52.49 -0.38 0.77 16 35 H 0.18 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.49 7.67 -51.93 -0.40 1.09 16 38 H 0.09 2.07 7.04 -51.93 -0.37 1.70 16 39 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 LS Contribution 335.95 15.07 5.06 5.06 Total: -1.00 -37.43 335.95 -9.65 -47.08 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -6.37 Total: -1.10 kcal Atomic # 6 Polarization: 22.85 SS G_CDS: -4.60 Total: 18.24 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: 1.22 Total: -65.49 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: 0.08 Total: -18.24 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -37.43 -9.65 -47.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592671621.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.730 kcal (2) G-P(sol) polarization free energy of solvation -37.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds