Wall clock time and date at job start Tue Mar 31 2020 05:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86803 * 119.99674 * 2 1 4 4 H 1.48497 * 109.46882 * 269.99660 * 3 2 1 5 5 H 1.48496 * 109.47112 * 30.00136 * 3 2 1 6 6 H 1.48501 * 109.46676 * 150.00177 * 3 2 1 7 7 C 1.40047 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99751 * 180.02562 * 7 2 1 9 9 C 1.46373 * 120.00227 * 359.97438 * 7 2 1 10 10 O 1.21689 * 119.99738 * 8.65602 * 9 7 2 11 11 N 1.34780 * 120.00245 * 188.65263 * 9 7 2 12 12 C 1.47080 * 120.88051 * 185.31653 * 11 9 7 13 13 C 1.53241 * 108.52136 * 128.84116 * 12 11 9 14 14 N 1.46902 * 109.33838 * 53.82440 * 13 12 11 15 15 C 1.38773 * 110.99640 * 172.74809 * 14 13 12 16 16 N 1.32585 * 120.15575 * 37.21560 * 15 14 13 17 17 C 1.32268 * 119.99845 * 179.97438 * 16 15 14 18 18 C 1.38293 * 120.31741 * 0.02562 * 17 16 15 19 19 N 1.32118 * 120.31397 * 359.97438 * 18 17 16 20 20 C 1.32751 * 119.99181 * 359.73086 * 19 18 17 21 21 C 1.48307 * 120.15951 * 180.27978 * 20 19 18 22 22 N 1.34096 * 126.68737 * 177.98496 * 21 20 19 23 23 N 1.28980 * 107.26312 * 179.83668 * 22 21 20 24 24 N 1.28728 * 108.96008 * 0.42963 * 23 22 21 25 25 H 0.97007 * 125.33299 * 179.74137 * 24 23 22 26 26 N 1.28868 * 109.33198 * 359.73172 * 24 23 22 27 27 C 1.46900 * 111.27096 * 296.89787 * 14 13 12 28 28 C 1.47076 * 120.87859 * 5.34069 * 11 9 7 29 29 H 0.96996 * 119.99655 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.63093 * 9.12331 * 12 11 9 31 31 H 1.09007 * 109.62436 * 248.54771 * 12 11 9 32 32 H 1.08996 * 109.49304 * 173.79014 * 13 12 11 33 33 H 1.09002 * 109.48750 * 293.84036 * 13 12 11 34 34 H 1.08003 * 119.84231 * 179.97438 * 17 16 15 35 35 H 1.07996 * 119.84618 * 180.02562 * 18 17 16 36 36 H 1.08996 * 109.48927 * 183.06890 * 27 14 13 37 37 H 1.08998 * 109.49201 * 303.14516 * 27 14 13 38 38 H 1.09005 * 109.63052 * 111.44772 * 28 11 9 39 39 H 1.08999 * 109.62853 * 350.86746 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0071 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2752 -2.4805 0.0017 10 8 0.0687 -2.4866 -0.1565 11 7 1.9377 -3.6410 0.1778 12 6 1.2416 -4.9319 0.0671 13 6 2.0277 -5.8278 -0.8960 14 7 3.4252 -5.9117 -0.4512 15 6 4.1310 -6.8413 -1.2020 16 7 3.8912 -6.9697 -2.4996 17 6 4.5661 -7.8563 -3.2123 18 6 5.5229 -8.6531 -2.6106 19 7 5.7719 -8.5356 -1.3184 20 6 5.1060 -7.6457 -0.5925 21 6 5.3870 -7.5064 0.8570 22 7 4.8234 -6.6306 1.7018 23 7 5.3366 -6.8380 2.8668 24 7 6.1960 -7.7926 2.7813 25 1 6.7245 -8.1391 3.5172 26 7 6.2439 -8.2158 1.5651 27 6 4.0778 -4.5963 -0.4933 28 6 3.3757 -3.6500 0.4863 29 1 -0.4849 0.8400 -0.0004 30 1 0.2349 -4.7731 -0.3195 31 1 1.1898 -5.4052 1.0477 32 1 1.5884 -6.8253 -0.9054 33 1 1.9897 -5.4042 -1.8996 34 1 4.3684 -7.9590 -4.2691 35 1 6.0697 -9.3742 -3.1998 36 1 5.1253 -4.7008 -0.2107 37 1 4.0117 -4.1896 -1.5025 38 1 3.5290 -4.0000 1.5072 39 1 3.7800 -2.6437 0.3766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606345708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:34 Heat of formation + Delta-G solvation = 179.056750 kcal Electronic energy + Delta-G solvation = -28287.424945 eV Core-core repulsion = 24269.829721 eV Total energy + Delta-G solvation = -4017.595224 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.46911 -41.43926 -38.76514 -36.67374 -34.90236 -34.33338 -33.75445 -32.66828 -32.40038 -30.76041 -30.36758 -27.06100 -26.13591 -25.75497 -24.51481 -23.20405 -23.05084 -22.48106 -20.82873 -19.47189 -18.88788 -17.68701 -17.46650 -17.18585 -17.01661 -16.27499 -15.51565 -15.37634 -14.83909 -14.36242 -14.27031 -14.17168 -14.07224 -13.94473 -13.53090 -13.18610 -12.47359 -12.22079 -11.96025 -11.80384 -11.74030 -11.45848 -11.29949 -11.26699 -11.08805 -11.03277 -10.90045 -10.83016 -10.67559 -10.60183 -10.19265 -9.97987 -9.59446 -9.24336 -8.82946 -8.34550 -7.54323 -7.15447 -6.16889 -4.60506 0.16498 0.79511 1.14495 2.13365 2.19721 3.14970 3.15968 3.22895 3.25789 3.43262 3.52865 3.86542 4.06544 4.12187 4.45746 4.58504 4.61138 4.64776 4.86938 5.07260 5.22633 5.35582 5.47844 5.50556 5.67732 5.71670 5.81938 5.88603 5.98249 6.08312 6.23558 6.29821 6.49541 6.62006 6.80963 6.88281 7.04931 7.20219 7.48752 7.51188 7.64761 8.16643 8.16945 8.40529 9.05733 9.48452 10.61242 10.79713 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.015299 B = 0.003589 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.697065 B = 7800.132941 C = 8584.943242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.089 3.911 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.072 0.928 9 C 0.562 3.438 10 O -0.578 6.578 11 N -0.642 5.642 12 C 0.128 3.872 13 C 0.051 3.949 14 N -0.462 5.462 15 C 0.306 3.694 16 N -0.465 5.465 17 C 0.086 3.914 18 C 0.031 3.969 19 N -0.400 5.400 20 C 0.160 3.840 21 C 0.223 3.777 22 N -0.206 5.206 23 N -0.055 5.055 24 N -0.235 5.235 25 H 0.473 0.527 26 N -0.270 5.270 27 C 0.061 3.939 28 C 0.132 3.868 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.174 0.826 35 H 0.177 0.823 36 H 0.071 0.929 37 H 0.047 0.953 38 H 0.062 0.938 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.822 -17.309 -0.885 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.090 0.910 9 C 0.368 3.632 10 O -0.461 6.461 11 N -0.381 5.381 12 C 0.004 3.996 13 C -0.076 4.076 14 N -0.184 5.184 15 C 0.072 3.928 16 N -0.183 5.183 17 C -0.077 4.077 18 C -0.130 4.130 19 N -0.116 5.116 20 C 0.014 3.986 21 C -0.058 4.058 22 N -0.080 5.080 23 N -0.051 5.051 24 N -0.080 5.080 25 H 0.327 0.673 26 N -0.124 5.124 27 C -0.066 4.066 28 C 0.007 3.993 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.191 0.809 35 H 0.194 0.806 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.846 -17.015 0.146 21.937 hybrid contribution 1.023 0.331 -0.849 1.370 sum 14.869 -16.685 -0.704 22.360 Atomic orbital electron populations 1.70009 1.07046 1.27250 1.35524 1.25706 0.94580 1.00211 0.92571 0.86416 0.80217 0.81602 0.78805 1.19796 1.20480 1.18862 1.20937 0.93503 0.89275 1.54392 0.90990 1.18226 0.86721 0.82166 0.76061 1.90588 1.14775 1.85952 1.54745 1.48236 1.08002 1.05206 1.76663 1.21202 0.96517 0.84496 0.97425 1.22562 0.85678 1.00362 0.99047 1.59822 1.03081 1.07953 1.47494 1.20875 0.90733 0.93864 0.87372 1.68839 1.25609 1.18165 1.05706 1.23882 0.91588 0.90612 1.01616 1.23645 0.97972 1.00607 0.90787 1.68214 1.21668 1.14912 1.06813 1.18329 0.96379 0.95315 0.88545 1.22629 0.94725 0.93746 0.94720 1.76555 1.18655 1.18854 0.93974 1.79112 1.02267 1.04988 1.18716 1.47850 1.28419 1.23260 1.08467 0.67280 1.75063 1.21925 1.23428 0.91935 1.22574 0.97641 0.85956 1.00402 1.21486 0.82380 0.98699 0.96699 0.92125 0.89322 0.92966 0.91040 0.92521 0.80878 0.80611 0.91092 0.93438 0.91949 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.06 11.87 55.55 0.66 -22.40 16 2 C 0.09 2.47 5.50 -17.36 -0.10 2.37 16 3 Si 0.90 20.06 29.56 -169.99 -5.02 15.03 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 6 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.54 -15.20 8.84 -35.63 -0.31 -15.51 16 8 H 0.07 1.83 5.74 -52.49 -0.30 1.53 16 9 C 0.56 16.04 7.61 -12.99 -0.10 15.94 16 10 O -0.58 -18.74 14.55 5.20 0.08 -18.66 16 11 N -0.64 -14.82 3.01 -174.12 -0.52 -15.34 16 12 C 0.13 2.59 6.58 -3.60 -0.02 2.57 16 13 C 0.05 0.88 5.07 -3.70 -0.02 0.86 16 14 N -0.46 -7.42 2.96 -172.54 -0.51 -7.93 16 15 C 0.31 4.47 5.55 -154.63 -0.86 3.61 16 16 N -0.47 -6.24 9.47 -12.02 -0.11 -6.35 16 17 C 0.09 0.80 11.21 -17.34 -0.19 0.60 16 18 C 0.03 0.27 11.20 -17.41 -0.20 0.08 16 19 N -0.40 -4.88 10.44 -9.44 -0.10 -4.98 16 20 C 0.16 2.21 6.78 -82.54 -0.56 1.66 16 21 C 0.22 3.12 8.01 -156.28 -1.25 1.87 16 22 N -0.21 -3.04 10.49 32.14 0.34 -2.70 16 23 N -0.06 -0.69 13.47 60.35 0.81 0.13 16 24 N -0.23 -2.15 7.90 60.35 0.48 -1.68 16 25 H 0.47 1.90 8.96 -340.35 -3.05 -1.15 16 26 N -0.27 -3.23 12.39 32.15 0.40 -2.84 16 27 C 0.06 1.01 5.07 -3.70 -0.02 0.99 16 28 C 0.13 2.54 6.52 -3.61 -0.02 2.52 16 29 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 30 H 0.09 1.96 7.10 -51.93 -0.37 1.59 16 31 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 32 H 0.07 1.11 8.09 -51.93 -0.42 0.69 16 33 H 0.06 1.04 7.87 -51.93 -0.41 0.64 16 34 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.07 1.08 8.04 -51.93 -0.42 0.66 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.10 1.93 5.39 -51.93 -0.28 1.65 16 LS Contribution 335.39 15.07 5.05 5.05 Total: -1.00 -37.71 335.39 -8.61 -46.31 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -6.50 Total: -1.20 kcal Atomic # 6 Polarization: 21.21 SS G_CDS: -3.65 Total: 17.56 kcal Atomic # 7 Polarization: -65.53 SS G_CDS: 1.44 Total: -64.10 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: 0.08 Total: -18.66 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -37.71 -8.61 -46.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606345708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.370 kcal (2) G-P(sol) polarization free energy of solvation -37.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 187.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 179.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds