Wall clock time and date at job start Tue Mar 31 2020 05:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86803 * 119.99674 * 2 1 4 4 H 1.48497 * 109.46882 * 269.99660 * 3 2 1 5 5 H 1.48496 * 109.47112 * 30.00136 * 3 2 1 6 6 H 1.48501 * 109.46676 * 150.00177 * 3 2 1 7 7 C 1.40047 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99751 * 180.02562 * 7 2 1 9 9 C 1.46373 * 120.00227 * 359.97438 * 7 2 1 10 10 O 1.21689 * 119.99738 * 8.65602 * 9 7 2 11 11 N 1.34780 * 120.00245 * 188.65263 * 9 7 2 12 12 C 1.47080 * 120.88051 * 185.31653 * 11 9 7 13 13 C 1.53241 * 108.52136 * 128.84116 * 12 11 9 14 14 N 1.46902 * 109.33838 * 53.82440 * 13 12 11 15 15 C 1.38773 * 110.99640 * 172.74809 * 14 13 12 16 16 N 1.32585 * 120.15575 * 37.21560 * 15 14 13 17 17 C 1.32268 * 119.99845 * 179.97438 * 16 15 14 18 18 C 1.38293 * 120.31741 * 0.02562 * 17 16 15 19 19 N 1.32118 * 120.31397 * 359.97438 * 18 17 16 20 20 C 1.32751 * 119.99181 * 359.73086 * 19 18 17 21 21 C 1.48307 * 120.15951 * 180.27978 * 20 19 18 22 22 N 1.34096 * 126.68737 * 177.98496 * 21 20 19 23 23 N 1.28980 * 107.26312 * 179.83668 * 22 21 20 24 24 N 1.28728 * 108.96008 * 0.42963 * 23 22 21 25 25 H 0.97007 * 125.33299 * 179.74137 * 24 23 22 26 26 N 1.28868 * 109.33198 * 359.73172 * 24 23 22 27 27 C 1.46900 * 111.27096 * 296.89787 * 14 13 12 28 28 C 1.47076 * 120.87859 * 5.34069 * 11 9 7 29 29 H 0.96996 * 119.99655 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.63093 * 9.12331 * 12 11 9 31 31 H 1.09007 * 109.62436 * 248.54771 * 12 11 9 32 32 H 1.08996 * 109.49304 * 173.79014 * 13 12 11 33 33 H 1.09002 * 109.48750 * 293.84036 * 13 12 11 34 34 H 1.08003 * 119.84231 * 179.97438 * 17 16 15 35 35 H 1.07996 * 119.84618 * 180.02562 * 18 17 16 36 36 H 1.08996 * 109.48927 * 183.06890 * 27 14 13 37 37 H 1.08998 * 109.49201 * 303.14516 * 27 14 13 38 38 H 1.09005 * 109.63052 * 111.44772 * 28 11 9 39 39 H 1.08999 * 109.62853 * 350.86746 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0071 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2752 -2.4805 0.0017 10 8 0.0687 -2.4866 -0.1565 11 7 1.9377 -3.6410 0.1778 12 6 1.2416 -4.9319 0.0671 13 6 2.0277 -5.8278 -0.8960 14 7 3.4252 -5.9117 -0.4512 15 6 4.1310 -6.8413 -1.2020 16 7 3.8912 -6.9697 -2.4996 17 6 4.5661 -7.8563 -3.2123 18 6 5.5229 -8.6531 -2.6106 19 7 5.7719 -8.5356 -1.3184 20 6 5.1060 -7.6457 -0.5925 21 6 5.3870 -7.5064 0.8570 22 7 4.8234 -6.6306 1.7018 23 7 5.3366 -6.8380 2.8668 24 7 6.1960 -7.7926 2.7813 25 1 6.7245 -8.1391 3.5172 26 7 6.2439 -8.2158 1.5651 27 6 4.0778 -4.5963 -0.4933 28 6 3.3757 -3.6500 0.4863 29 1 -0.4849 0.8400 -0.0004 30 1 0.2349 -4.7731 -0.3195 31 1 1.1898 -5.4052 1.0477 32 1 1.5884 -6.8253 -0.9054 33 1 1.9897 -5.4042 -1.8996 34 1 4.3684 -7.9590 -4.2691 35 1 6.0697 -9.3742 -3.1998 36 1 5.1253 -4.7008 -0.2107 37 1 4.0117 -4.1896 -1.5025 38 1 3.5290 -4.0000 1.5072 39 1 3.7800 -2.6437 0.3766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606345708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:33 Heat of formation + Delta-G solvation = 148.816218 kcal Electronic energy + Delta-G solvation = -28288.736273 eV Core-core repulsion = 24269.829721 eV Total energy + Delta-G solvation = -4018.906552 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.38522 -42.38039 -40.32139 -38.44358 -35.86173 -35.61517 -34.95479 -34.60421 -33.69309 -32.26211 -31.49092 -28.85621 -27.54840 -26.91429 -25.50779 -24.58991 -24.31604 -23.39869 -22.51260 -20.64416 -20.30076 -18.91778 -18.56705 -18.17990 -18.09280 -17.85980 -17.31489 -16.56020 -16.18601 -15.91046 -15.77744 -15.55384 -15.36656 -15.03527 -14.88292 -14.39465 -14.31545 -13.47764 -13.40557 -13.14966 -13.11266 -12.80831 -12.71507 -12.68786 -12.67672 -12.25623 -12.24142 -12.14928 -12.05253 -11.99403 -11.92613 -11.72412 -10.91062 -10.59574 -10.16386 -9.76367 -9.50869 -9.05218 -8.26663 -6.80291 -0.71828 -0.07438 0.23805 1.24521 1.41665 1.42745 1.43157 1.58160 2.18828 2.27183 2.44766 2.49760 2.61991 2.84687 2.95563 3.24705 3.50957 3.61740 3.79832 3.95930 4.05806 4.15578 4.22826 4.27121 4.38443 4.41194 4.41249 4.53917 4.61690 4.72682 4.82421 4.98011 5.13483 5.21257 5.40979 5.63435 5.67358 5.76747 5.96186 6.14745 6.18515 6.42251 6.64219 6.91083 7.23424 7.44487 8.49105 8.70058 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.015299 B = 0.003589 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.697065 B = 7800.132941 C = 8584.943242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.031 3.969 3 Si 0.994 3.006 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.246 1.246 7 C -0.568 4.568 8 H 0.093 0.907 9 C 0.545 3.455 10 O -0.632 6.632 11 N -0.644 5.644 12 C 0.129 3.871 13 C 0.072 3.928 14 N -0.461 5.461 15 C 0.281 3.719 16 N -0.491 5.491 17 C 0.094 3.906 18 C 0.055 3.945 19 N -0.417 5.417 20 C 0.148 3.852 21 C 0.209 3.791 22 N -0.239 5.239 23 N -0.065 5.065 24 N -0.203 5.203 25 H 0.493 0.507 26 N -0.270 5.270 27 C 0.076 3.924 28 C 0.135 3.865 29 H 0.274 0.726 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.040 0.960 34 H 0.216 0.784 35 H 0.225 0.775 36 H 0.088 0.912 37 H 0.033 0.967 38 H 0.068 0.932 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.061 -18.598 -1.807 25.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.184 4.184 3 Si 0.813 3.187 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.169 1.169 7 C -0.604 4.604 8 H 0.111 0.889 9 C 0.351 3.649 10 O -0.519 6.519 11 N -0.381 5.381 12 C 0.005 3.995 13 C -0.057 4.057 14 N -0.183 5.183 15 C 0.048 3.952 16 N -0.209 5.209 17 C -0.070 4.070 18 C -0.108 4.108 19 N -0.133 5.133 20 C 0.005 3.995 21 C -0.072 4.072 22 N -0.112 5.112 23 N -0.061 5.061 24 N -0.054 5.054 25 H 0.352 0.648 26 N -0.124 5.124 27 C -0.050 4.050 28 C 0.011 3.989 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.058 0.942 34 H 0.232 0.768 35 H 0.242 0.758 36 H 0.106 0.894 37 H 0.051 0.949 38 H 0.086 0.914 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 17.144 -18.353 -0.712 25.125 hybrid contribution 0.126 0.479 -0.641 0.810 sum 17.269 -17.874 -1.353 24.891 Atomic orbital electron populations 1.70187 1.09544 1.28859 1.36789 1.26958 0.95457 1.04828 0.91178 0.85077 0.78977 0.75294 0.79342 1.18809 1.19851 1.16920 1.21450 0.94711 0.89722 1.54521 0.88911 1.18642 0.86386 0.84018 0.75860 1.90533 1.16953 1.87200 1.57205 1.48097 1.09587 1.04883 1.75483 1.21238 0.95716 0.83977 0.98547 1.22234 0.86635 1.00014 0.96785 1.59679 1.02250 1.07718 1.48650 1.20642 0.92100 0.94407 0.88032 1.68785 1.26792 1.19846 1.05511 1.24630 0.90347 0.88887 1.03093 1.24500 0.96660 0.99835 0.89769 1.68310 1.21938 1.14744 1.08269 1.18287 0.96647 0.95839 0.88727 1.22792 0.95184 0.94034 0.95160 1.76523 1.19898 1.20076 0.94687 1.79039 1.02953 1.05833 1.18230 1.47884 1.27191 1.21808 1.08474 0.64789 1.75018 1.21605 1.23273 0.92527 1.22306 0.98107 0.86095 0.98519 1.21552 0.80208 0.99296 0.97823 0.91654 0.92001 0.92311 0.89306 0.94194 0.76756 0.75847 0.89364 0.94868 0.91412 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.19 11.87 21.84 0.26 -50.93 16 2 C 0.03 1.73 5.50 85.30 0.47 2.20 16 3 Si 0.99 41.31 29.56 68.60 2.03 43.33 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 7 C -0.57 -32.49 8.84 24.83 0.22 -32.27 16 8 H 0.09 4.74 5.74 -2.91 -0.02 4.72 16 9 C 0.54 32.58 7.61 86.36 0.66 33.24 16 10 O -0.63 -43.44 14.55 -4.31 -0.06 -43.50 16 11 N -0.64 -30.98 3.01 -823.02 -2.48 -33.45 16 12 C 0.13 5.49 6.58 86.35 0.57 6.06 16 13 C 0.07 2.50 5.07 86.38 0.44 2.94 16 14 N -0.46 -14.82 2.96 -699.78 -2.07 -16.89 16 15 C 0.28 7.91 5.55 133.38 0.74 8.65 16 16 N -0.49 -12.29 9.47 -191.95 -1.82 -14.11 16 17 C 0.09 1.40 11.21 84.64 0.95 2.35 16 18 C 0.05 0.73 11.20 84.66 0.95 1.67 16 19 N -0.42 -8.96 10.44 -183.79 -1.92 -10.88 16 20 C 0.15 3.87 6.78 42.20 0.29 4.16 16 21 C 0.21 5.62 8.01 137.30 1.10 6.72 16 22 N -0.24 -6.89 10.49 -52.24 -0.55 -7.44 16 23 N -0.07 -1.56 13.47 37.02 0.50 -1.06 16 24 N -0.20 -3.40 7.90 37.02 0.29 -3.10 16 25 H 0.49 2.96 8.96 -347.52 -3.12 -0.15 16 26 N -0.27 -6.02 12.39 -52.19 -0.65 -6.66 16 27 C 0.08 2.55 5.07 86.38 0.44 2.99 16 28 C 0.13 5.29 6.52 86.35 0.56 5.85 16 29 H 0.27 15.40 8.29 -92.71 -0.77 14.63 16 30 H 0.06 2.94 7.10 -2.39 -0.02 2.92 16 31 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 32 H 0.09 2.77 8.09 -2.39 -0.02 2.75 16 33 H 0.04 1.52 7.87 -2.39 -0.02 1.50 16 34 H 0.22 1.27 8.06 -2.91 -0.02 1.24 16 35 H 0.23 0.70 8.06 -2.91 -0.02 0.68 16 36 H 0.09 2.64 8.04 -2.39 -0.02 2.62 16 37 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 39 H 0.09 3.63 5.39 -2.39 -0.01 3.62 16 Total: -1.00 -87.21 335.39 -1.06 -88.27 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -1.97 Total: 11.88 kcal Atomic # 6 Polarization: 37.17 SS G_CDS: 7.38 Total: 44.55 kcal Atomic # 7 Polarization: -136.10 SS G_CDS: -8.43 Total: -144.53 kcal Atomic # 8 Polarization: -43.44 SS G_CDS: -0.06 Total: -43.50 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.33 kcal Total: -87.21 -1.06 -88.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606345708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.084 kcal (2) G-P(sol) polarization free energy of solvation -87.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds