Wall clock time and date at job start Tue Mar 31 2020 06:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00161 * 2 1 4 4 H 1.48500 * 109.47063 * 270.00093 * 3 2 1 5 5 H 1.48501 * 109.46752 * 30.00225 * 3 2 1 6 6 H 1.48498 * 109.47017 * 149.99962 * 3 2 1 7 7 C 1.37876 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00117 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.49997 * 60.08158 * 9 7 2 11 11 C 1.53119 * 109.50339 * 300.00137 * 9 7 2 12 12 C 1.53124 * 109.15841 * 182.40666 * 11 9 7 13 13 C 1.53032 * 109.28012 * 57.65244 * 12 11 9 14 14 N 1.46846 * 109.52260 * 300.82015 * 13 12 11 15 15 C 1.46902 * 111.00204 * 185.84105 * 14 13 12 16 16 C 1.50705 * 109.47245 * 66.04321 * 15 14 13 17 17 O 1.21283 * 119.99539 * 0.02562 * 16 15 14 18 18 N 1.34771 * 120.00066 * 180.02562 * 16 15 14 19 19 C 1.46509 * 119.99760 * 180.02562 * 18 16 15 20 20 H 1.08999 * 109.63978 * 325.69997 * 19 18 16 21 21 C 1.53873 * 109.64939 * 86.12818 * 19 18 16 22 22 C 1.54968 * 106.66202 * 167.15020 * 21 19 18 23 23 S 1.83288 * 102.47988 * 317.38542 * 22 21 19 24 24 O 1.42103 * 109.35435 * 269.90097 * 23 22 21 25 25 O 1.42100 * 109.35553 * 136.69762 * 23 22 21 26 26 C 1.54165 * 109.64236 * 205.27239 * 19 18 16 27 27 C 1.46846 * 111.19997 * 61.74591 * 14 13 12 28 28 H 0.97003 * 120.00285 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.52394 * 62.49954 * 11 9 7 30 30 H 1.09003 * 109.56984 * 302.33898 * 11 9 7 31 31 H 1.08999 * 109.49853 * 297.70868 * 12 11 9 32 32 H 1.08994 * 109.53481 * 177.61659 * 12 11 9 33 33 H 1.09001 * 109.46314 * 180.80749 * 13 12 11 34 34 H 1.08999 * 109.45415 * 60.83229 * 13 12 11 35 35 H 1.09001 * 109.47344 * 186.04531 * 15 14 13 36 36 H 1.09004 * 109.47104 * 306.04740 * 15 14 13 37 37 H 0.96999 * 120.00634 * 359.97438 * 18 16 15 38 38 H 1.08997 * 110.02379 * 286.32717 * 21 19 18 39 39 H 1.09000 * 110.02552 * 47.74228 * 21 19 18 40 40 H 1.08993 * 110.76061 * 199.17769 * 22 21 19 41 41 H 1.09004 * 111.07216 * 75.72754 * 22 21 19 42 42 H 1.09000 * 110.31932 * 331.13685 * 26 19 18 43 43 H 1.09000 * 110.32080 * 93.33937 * 26 19 18 44 44 H 1.08996 * 109.46231 * 58.27402 * 27 14 13 45 45 H 1.09004 * 109.46418 * 178.24241 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6248 -2.5578 -0.8909 11 6 0.3708 -2.5813 1.2497 12 6 -0.3448 -3.9348 1.2725 13 6 0.6952 -5.0569 1.2399 14 7 1.5110 -4.9347 0.0250 15 6 2.4284 -6.0741 -0.1099 16 6 1.6341 -7.3346 -0.3367 17 8 0.4230 -7.2882 -0.3819 18 7 2.2696 -8.5132 -0.4891 19 6 1.4974 -9.7385 -0.7101 20 1 0.5596 -9.6853 -0.1571 21 6 1.2039 -9.9014 -2.2118 22 6 0.6881 -11.3493 -2.4092 23 16 1.8236 -12.3222 -1.3492 24 8 2.9491 -12.7301 -2.1148 25 8 1.0764 -13.2843 -0.6176 26 6 2.3119 -10.9575 -0.2333 27 6 2.2448 -3.6629 0.0038 28 1 -0.4851 0.8400 0.0004 29 1 -0.3671 -1.7793 1.2291 30 1 0.9915 -2.4824 2.1403 31 1 -0.9960 -4.0167 0.4022 32 1 -0.9404 -4.0169 2.1816 33 1 0.1885 -6.0220 1.2415 34 1 1.3373 -4.9824 2.1175 35 1 3.0938 -5.9066 -0.9569 36 1 3.0184 -6.1754 0.8011 37 1 3.2382 -8.5503 -0.4533 38 1 0.4391 -9.1894 -2.5220 39 1 2.1152 -9.7462 -2.7892 40 1 0.7777 -11.6525 -3.4523 41 1 -0.3417 -11.4488 -2.0662 42 1 3.3796 -10.7582 -0.3239 43 1 2.0578 -11.2026 0.7980 44 1 2.8796 -3.5952 0.8871 45 1 2.8635 -3.6155 -0.8924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645951167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:39 Heat of formation + Delta-G solvation = -100.733888 kcal Electronic energy + Delta-G solvation = -26460.495142 eV Core-core repulsion = 22605.166078 eV Total energy + Delta-G solvation = -3855.329064 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.18812 -38.11663 -37.52103 -36.83796 -36.44428 -33.70677 -33.31256 -31.75392 -30.17538 -29.85292 -27.29146 -25.17911 -24.93480 -22.59123 -21.67332 -21.40309 -20.62072 -19.31854 -18.64071 -17.54411 -17.32970 -16.77448 -16.45048 -16.14435 -15.93776 -15.39600 -14.98980 -14.61275 -14.57255 -14.27645 -14.20365 -13.70064 -13.24597 -13.10930 -12.94402 -12.74382 -12.66462 -12.55448 -12.48710 -12.41389 -12.17981 -11.88980 -11.67396 -11.36313 -11.31490 -10.96666 -10.84720 -10.70076 -10.66848 -10.14446 -9.87591 -9.82015 -9.47552 -9.40408 -8.99001 -8.70020 -8.30057 -7.72695 -5.97648 -4.04440 -0.49459 1.96043 2.56828 2.82631 3.05482 3.29904 3.36836 3.39024 3.52378 3.73729 4.07984 4.12638 4.26466 4.36883 4.44500 4.53672 4.74887 4.89761 5.02670 5.15147 5.32221 5.32734 5.37597 5.41089 5.51517 5.78743 5.85460 6.03966 6.14803 6.30205 6.35068 6.51202 6.74763 6.80164 6.93355 7.16644 7.23965 7.39964 7.62259 7.72030 7.77364 8.07863 8.14006 8.19028 8.46550 8.99606 9.59814 11.08209 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.036589 B = 0.002107 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.078692 B =13288.934445 C =13533.223872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.056 3.944 10 H 0.035 0.965 11 C -0.111 4.111 12 C -0.114 4.114 13 C 0.059 3.941 14 N -0.521 5.521 15 C 0.036 3.964 16 C 0.516 3.484 17 O -0.509 6.509 18 N -0.731 5.731 19 C 0.157 3.843 20 H 0.111 0.889 21 C -0.137 4.137 22 C -0.582 4.582 23 S 2.395 3.605 24 O -0.934 6.934 25 O -0.935 6.935 26 C -0.610 4.610 27 C 0.068 3.932 28 H 0.260 0.740 29 H 0.091 0.909 30 H 0.029 0.971 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.016 0.984 35 H 0.102 0.898 36 H 0.057 0.943 37 H 0.403 0.597 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.020 0.980 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.777 -22.812 -1.529 23.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.053 0.947 11 C -0.149 4.149 12 C -0.152 4.152 13 C -0.068 4.068 14 N -0.246 5.246 15 C -0.096 4.096 16 C 0.302 3.698 17 O -0.382 6.382 18 N -0.386 5.386 19 C 0.050 3.950 20 H 0.129 0.871 21 C -0.177 4.177 22 C -0.712 4.712 23 S 2.577 3.423 24 O -0.931 6.931 25 O -0.932 6.932 26 C -0.738 4.738 27 C -0.058 4.058 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.035 0.965 35 H 0.120 0.880 36 H 0.075 0.925 37 H 0.238 0.762 38 H 0.126 0.874 39 H 0.110 0.890 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.162 0.838 43 H 0.164 0.836 44 H 0.039 0.961 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.675 -23.583 -1.952 23.948 hybrid contribution 1.384 1.724 0.770 2.341 sum 5.059 -21.859 -1.182 22.468 Atomic orbital electron populations 1.69896 1.05846 1.26345 1.50468 1.24939 0.94825 0.98961 0.95139 0.86625 0.79803 0.83648 0.78055 1.20714 1.21283 1.20053 1.21126 0.92763 0.90632 1.50925 0.92852 1.18657 0.92571 0.90035 0.95054 0.94658 1.21669 1.00047 0.94934 0.98296 1.21626 0.97216 0.96091 1.00277 1.22182 0.95532 1.00323 0.88786 1.61750 1.22694 1.00850 1.39323 1.21950 0.95040 0.90211 1.02380 1.20977 0.88957 0.84434 0.75430 1.90700 1.14028 1.85780 1.47653 1.46069 1.10220 1.06317 1.76018 1.21188 0.95864 0.82763 0.95150 0.87134 1.22682 1.04106 0.94713 0.96175 1.30560 1.15671 1.09186 1.15807 1.08936 0.77448 0.77655 0.78217 1.93641 1.49763 1.80367 1.69290 1.93634 1.71694 1.56496 1.71407 1.30929 1.10739 1.15474 1.16698 1.22373 0.96541 0.88116 0.98770 0.93026 0.89107 0.95247 0.91956 0.93641 0.90724 0.96540 0.88035 0.92535 0.76228 0.87368 0.88999 0.84057 0.84016 0.83838 0.83578 0.96126 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.24 11.35 55.43 0.63 -24.61 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -13.90 8.56 -34.44 -0.29 -14.19 16 8 H 0.05 1.40 7.74 -52.48 -0.41 1.00 16 9 C 0.06 1.38 2.26 -91.69 -0.21 1.17 16 10 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 11 C -0.11 -2.65 5.02 -26.61 -0.13 -2.78 16 12 C -0.11 -2.33 6.09 -26.65 -0.16 -2.49 16 13 C 0.06 1.08 5.11 -3.84 -0.02 1.06 16 14 N -0.52 -9.43 4.39 -236.11 -1.04 -10.46 16 15 C 0.04 0.46 5.45 -4.97 -0.03 0.44 16 16 C 0.52 6.30 7.49 -10.99 -0.08 6.22 16 17 O -0.51 -8.23 14.00 5.56 0.08 -8.15 16 18 N -0.73 -5.55 5.09 -52.77 -0.27 -5.81 16 19 C 0.16 1.01 2.89 -66.86 -0.19 0.81 16 20 H 0.11 0.82 7.56 -51.93 -0.39 0.43 16 21 C -0.14 -0.79 6.07 -25.24 -0.15 -0.95 16 22 C -0.58 -2.48 7.31 38.20 0.28 -2.20 16 23 S 2.40 13.79 6.10 -107.50 -0.66 13.13 16 24 O -0.93 -8.60 18.15 -57.71 -1.05 -9.64 16 25 O -0.94 -8.92 18.15 -57.71 -1.05 -9.97 16 26 C -0.61 -2.46 6.92 37.77 0.26 -2.20 16 27 C 0.07 1.39 4.68 -3.83 -0.02 1.37 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.33 5.80 -51.93 -0.30 1.03 16 34 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.10 1.13 7.98 -51.93 -0.41 0.71 16 36 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 37 H 0.40 1.85 8.37 -40.82 -0.34 1.50 16 38 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.14 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.14 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.14 0.33 7.77 -51.93 -0.40 -0.07 16 43 H 0.15 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 1.17 8.01 -51.93 -0.42 0.76 16 LS Contribution 366.64 15.07 5.53 5.53 Total: -1.00 -36.84 366.64 -10.89 -47.73 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -7.20 Total: -1.61 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -0.85 Total: -12.11 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: -0.68 Total: -40.89 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -2.02 Total: -27.76 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 13.79 SS G_CDS: -0.66 Total: 13.13 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.84 -10.89 -47.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645951167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.005 kcal (2) G-P(sol) polarization free energy of solvation -36.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds