Wall clock time and date at job start Tue Mar 31 2020 05:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30846 * 125.89238 * 2 1 4 4 N 1.40085 * 108.22381 * 179.97438 * 3 2 1 5 5 C 1.46492 * 126.03887 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47441 * 90.02350 * 5 4 3 7 7 O 1.21283 * 119.99488 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00290 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27728 * 8 6 5 10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6 11 11 H 1.09002 * 109.47682 * 64.99618 * 10 9 8 12 12 C 1.53003 * 109.47530 * 184.99929 * 10 9 8 13 13 O 1.42902 * 109.46730 * 54.99530 * 12 10 9 14 14 N 1.46506 * 109.47012 * 304.99483 * 10 9 8 15 15 C 1.36937 * 119.99934 * 154.99714 * 14 10 9 16 16 H 1.07998 * 120.00035 * 0.02562 * 15 14 10 17 17 C 1.38810 * 120.00229 * 180.02562 * 15 14 10 18 18 N 1.31626 * 119.99636 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00308 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47420 * 89.99861 * 19 17 15 21 21 H 1.48504 * 109.47183 * 210.00218 * 19 17 15 22 22 H 1.48504 * 109.46991 * 329.99840 * 19 17 15 23 23 C 1.35047 * 107.92396 * 0.25936 * 4 3 2 24 24 C 1.50696 * 126.13519 * 179.71162 * 23 4 3 25 25 C 1.35376 * 107.72893 * 359.57992 * 23 4 3 26 26 Cl 1.73601 * 126.04874 * 180.15585 * 25 23 4 27 27 H 1.08999 * 109.47032 * 90.02578 * 1 2 3 28 28 H 1.08994 * 109.46754 * 210.02410 * 1 2 3 29 29 H 1.08998 * 109.47057 * 330.02639 * 1 2 3 30 30 H 1.08998 * 109.47276 * 330.02266 * 5 4 3 31 31 H 1.09002 * 109.47526 * 210.02578 * 5 4 3 32 32 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 33 33 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 34 34 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 35 35 H 1.08992 * 109.47566 * 174.99860 * 12 10 9 36 36 H 1.08998 * 109.46886 * 295.00118 * 12 10 9 37 37 H 0.96705 * 113.99732 * 180.02562 * 13 12 10 38 38 H 0.97000 * 120.00390 * 335.00529 * 14 10 9 39 39 H 0.97001 * 119.99765 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.46898 * 90.00386 * 24 23 4 41 41 H 1.09001 * 109.47431 * 210.00213 * 24 23 4 42 42 H 1.08994 * 109.47442 * 330.01146 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0600 0.0000 4 7 3.6089 0.6348 0.0006 5 6 4.7897 1.5019 0.0013 6 6 5.1943 1.7986 1.4224 7 8 4.5585 1.3320 2.3438 8 7 6.2619 2.5832 1.6693 9 6 6.6588 2.8666 3.0508 10 6 7.8949 3.7682 3.0515 11 1 7.6389 4.7362 2.6206 12 6 8.3835 3.9627 4.4883 13 8 8.6083 2.6870 5.0917 14 7 8.9549 3.1443 2.2556 15 6 9.9262 3.9199 1.6810 16 1 9.9112 4.9914 1.8149 17 6 10.9303 3.3288 0.9264 18 7 10.9489 2.0228 0.7636 19 14 12.2557 4.3866 0.1432 20 1 13.3933 4.5337 1.0864 21 1 12.7297 3.7410 -1.1073 22 1 11.6978 5.7263 -0.1721 23 6 3.6150 -0.7156 -0.0049 24 6 4.8360 -1.5988 -0.0124 25 6 2.3274 -1.1336 0.0007 26 17 1.7891 -2.7841 0.0009 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3632 -0.8897 0.5142 29 1 -0.3633 0.8902 0.5134 30 1 4.5559 2.4346 -0.5121 31 1 5.6095 1.0000 -0.5126 32 1 6.7701 2.9567 0.9323 33 1 5.8416 3.3700 3.5675 34 1 6.8905 1.9320 3.5613 35 1 9.3137 4.5307 4.4820 36 1 7.6298 4.5063 5.0579 37 1 8.9199 2.7338 6.0060 38 1 8.9686 2.1819 2.1355 39 1 11.6507 1.6097 0.2366 40 1 5.1337 -1.8159 1.0134 41 1 4.6071 -2.5308 -0.5293 42 1 5.6503 -1.0885 -0.5267 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676608389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:50 Heat of formation + Delta-G solvation = -6.862867 kcal Electronic energy + Delta-G solvation = -25942.744103 eV Core-core repulsion = 21985.901542 eV Total energy + Delta-G solvation = -3956.842561 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.125 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.53250 -39.38895 -37.21236 -36.44901 -35.00779 -34.20312 -33.60527 -32.08625 -31.45914 -29.99696 -28.42333 -27.09479 -26.49817 -24.70052 -23.67276 -20.82851 -20.48197 -20.20056 -19.48542 -17.78761 -17.18990 -17.02899 -16.66481 -15.67100 -15.57011 -15.30876 -14.64101 -14.53816 -14.12460 -14.05644 -13.66658 -13.49321 -13.40354 -13.29429 -13.11882 -12.97957 -12.58601 -12.50673 -12.34654 -12.10575 -11.91523 -11.83646 -11.49305 -11.29318 -10.95497 -10.92784 -10.66105 -10.49364 -10.18456 -9.98287 -9.85797 -9.44568 -9.16699 -9.06125 -8.75520 -8.35856 -7.13352 -5.90548 -3.21174 1.57466 1.86776 2.47671 2.64076 2.71050 3.32925 3.38611 3.40618 3.43339 4.36642 4.40430 4.44864 4.72655 4.82981 4.86830 4.88775 4.99605 5.17013 5.32113 5.41961 5.42633 5.46535 5.48049 5.53142 5.68463 5.77151 5.80996 5.91291 5.93865 5.96297 6.25384 6.35245 6.42542 6.64168 6.67625 6.76763 7.52524 7.54496 7.72741 8.13619 8.26487 8.35806 9.39059 9.93064 10.29839 11.30893 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.015743 B = 0.002710 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.156812 B =10328.661282 C =11038.026831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.091 3.909 3 N -0.276 5.276 4 N -0.344 5.344 5 C 0.113 3.887 6 C 0.494 3.506 7 O -0.533 6.533 8 N -0.706 5.706 9 C 0.120 3.880 10 C 0.166 3.834 11 H 0.067 0.933 12 C 0.059 3.941 13 O -0.561 6.561 14 N -0.713 5.713 15 C -0.249 4.249 16 H 0.070 0.930 17 C -0.007 4.007 18 N -0.926 5.926 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.121 3.879 24 C -0.100 4.100 25 C -0.192 4.192 26 Cl -0.047 7.047 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.411 0.589 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.027 0.973 37 H 0.365 0.635 38 H 0.389 0.611 39 H 0.256 0.744 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.680 -3.708 -1.544 16.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.076 4.076 3 N -0.097 5.097 4 N -0.125 5.125 5 C -0.012 4.012 6 C 0.277 3.723 7 O -0.410 6.410 8 N -0.359 5.359 9 C -0.004 4.004 10 C 0.055 3.945 11 H 0.084 0.916 12 C -0.022 4.022 13 O -0.364 6.364 14 N -0.355 5.355 15 C -0.380 4.380 16 H 0.088 0.912 17 C -0.204 4.204 18 N -0.573 5.573 19 Si 0.737 3.263 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.007 4.007 24 C -0.158 4.158 25 C -0.230 4.230 26 Cl -0.019 7.019 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.248 0.752 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.045 0.955 37 H 0.209 0.791 38 H 0.223 0.777 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.092 -2.879 -1.566 16.422 hybrid contribution 1.480 -0.213 -0.098 1.498 sum -14.612 -3.091 -1.664 15.028 Atomic orbital electron populations 1.20202 0.86096 1.03661 1.03157 1.22202 0.97211 0.88934 0.99303 1.77425 0.85788 1.21592 1.24915 1.47583 1.04948 1.03351 1.56615 1.21577 0.85622 0.97101 0.96907 1.20566 0.81273 0.79681 0.90790 1.90750 1.53298 1.51403 1.45552 1.45900 1.29411 1.50136 1.10459 1.21574 0.96191 1.01028 0.81584 1.20597 0.88168 0.95779 0.89986 0.91563 1.23028 0.98690 0.84868 0.95656 1.86562 1.89589 1.29778 1.30470 1.42379 1.27519 1.07194 1.58422 1.19211 1.03473 0.90707 1.24606 0.91177 1.24744 0.99058 0.95667 1.00915 1.69674 1.35181 1.08216 1.44239 0.86224 0.82159 0.79265 0.78658 1.21730 1.21741 1.20739 1.20711 0.96297 0.84770 0.98957 1.20586 0.92563 0.98193 1.04447 1.20205 0.92009 0.86697 1.24056 1.98291 1.89774 1.15940 1.97889 0.90260 0.90181 0.90533 0.85451 0.85415 0.75242 0.92032 0.90478 0.93239 0.95502 0.79067 0.77707 0.93387 0.89180 0.89185 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.31 36.01 0.37 -0.33 16 2 C 0.09 1.24 7.22 -82.38 -0.59 0.65 16 3 N -0.28 -4.25 12.57 33.69 0.42 -3.82 16 4 N -0.34 -4.96 3.10 -58.28 -0.18 -5.14 16 5 C 0.11 1.40 6.73 -5.20 -0.03 1.36 16 6 C 0.49 7.78 7.90 -10.98 -0.09 7.69 16 7 O -0.53 -10.54 16.43 5.55 0.09 -10.45 16 8 N -0.71 -10.94 5.39 -60.30 -0.32 -11.27 16 9 C 0.12 2.03 5.12 -4.04 -0.02 2.01 16 10 C 0.17 2.97 2.84 -67.93 -0.19 2.78 16 11 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 12 C 0.06 0.98 6.86 37.16 0.25 1.24 16 13 O -0.56 -9.68 12.64 -35.23 -0.45 -10.13 16 14 N -0.71 -16.02 4.51 -53.42 -0.24 -16.26 16 15 C -0.25 -6.24 9.93 -15.06 -0.15 -6.39 16 16 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 17 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 18 N -0.93 -26.05 13.06 55.49 0.72 -25.32 16 19 Si 0.91 20.92 29.55 -169.99 -5.02 15.90 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 C 0.12 1.66 6.94 -82.20 -0.57 1.09 16 24 C -0.10 -1.09 9.94 36.00 0.36 -0.73 16 25 C -0.19 -2.59 6.63 -39.97 -0.27 -2.85 16 26 Cl -0.05 -0.54 28.59 -51.86 -1.48 -2.02 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.69 8.00 -51.93 -0.42 0.28 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.13 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.13 1.25 7.05 -51.93 -0.37 0.89 16 32 H 0.41 6.12 8.14 -40.82 -0.33 5.79 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.49 7.39 -51.93 -0.38 1.10 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.36 4.52 9.12 45.56 0.42 4.94 16 38 H 0.39 9.68 7.80 -40.82 -0.32 9.37 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.09 0.84 7.91 -51.93 -0.41 0.43 16 42 H 0.08 0.76 7.08 -51.93 -0.37 0.39 16 LS Contribution 376.78 15.07 5.68 5.68 Total: -1.00 -33.57 376.78 -6.91 -40.48 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -5.10 Total: 16.12 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -1.03 Total: 6.23 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: 0.40 Total: -61.81 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.35 Total: -20.57 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.48 Total: -2.02 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.57 -6.91 -40.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676608389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.622 kcal (2) G-P(sol) polarization free energy of solvation -33.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds