Wall clock time and date at job start Tue Mar 31 2020 05:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00297 * 2 1 4 4 H 1.48491 * 109.47473 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47099 * 300.00549 * 3 2 1 6 6 H 1.48498 * 109.47119 * 59.99624 * 3 2 1 7 7 C 1.38817 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00292 * 157.93247 * 7 2 1 9 9 N 1.36943 * 119.99408 * 337.93451 * 7 2 1 10 10 C 1.46496 * 120.00274 * 324.92321 * 9 7 2 11 11 C 1.52997 * 109.47499 * 270.00442 * 10 9 7 12 12 C 1.52998 * 109.47232 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47170 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00070 * 179.97438 * 13 12 11 15 15 O 1.21281 * 120.00051 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99813 * 179.97438 * 14 13 12 17 17 C 1.53011 * 109.47101 * 180.02562 * 16 14 13 18 18 C 1.53043 * 113.15114 * 275.37512 * 17 16 14 19 19 S 1.81424 * 89.88816 * 211.85089 * 18 17 16 20 20 O 1.42099 * 112.75251 * 280.47428 * 19 18 17 21 21 O 1.42096 * 112.75204 * 136.73125 * 19 18 17 22 22 C 1.53034 * 113.15424 * 174.99763 * 17 16 14 23 23 C 1.46504 * 119.99489 * 144.93086 * 9 7 2 24 24 C 1.53000 * 117.49921 * 3.23472 * 23 9 7 25 25 C 1.52998 * 117.49703 * 294.57074 * 23 9 7 26 26 H 0.96995 * 119.99672 * 355.90991 * 1 2 3 27 27 H 1.09005 * 109.47045 * 30.00589 * 10 9 7 28 28 H 1.08998 * 109.47092 * 149.99943 * 10 9 7 29 29 H 1.09005 * 109.47091 * 300.00118 * 11 10 9 30 30 H 1.09004 * 109.46959 * 59.99639 * 11 10 9 31 31 H 1.09005 * 109.47181 * 300.00066 * 12 11 10 32 32 H 1.08992 * 109.47145 * 60.00006 * 12 11 10 33 33 H 0.96999 * 119.99950 * 359.97438 * 13 12 11 34 34 H 1.08993 * 109.47308 * 299.99674 * 16 14 13 35 35 H 1.08996 * 109.47340 * 60.00619 * 16 14 13 36 36 H 1.09004 * 112.49479 * 45.21127 * 17 16 14 37 37 H 1.09000 * 113.14662 * 327.11077 * 18 17 16 38 38 H 1.09003 * 113.14831 * 96.59223 * 18 17 16 39 39 H 1.08995 * 113.15246 * 263.40696 * 22 17 16 40 40 H 1.09007 * 113.14780 * 32.89316 * 22 17 16 41 41 H 1.09004 * 115.54877 * 148.90350 * 23 9 7 42 42 H 1.08998 * 117.50153 * 359.97438 * 24 23 9 43 43 H 1.08995 * 117.49708 * 145.02504 * 24 23 9 44 44 H 1.08995 * 117.49988 * 214.98174 * 25 23 9 45 45 H 1.08997 * 117.49880 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3519 9 7 1.4007 -2.3448 0.4445 10 6 0.4457 -2.2813 1.5535 11 6 1.1887 -2.4675 2.8779 12 6 0.1913 -2.4005 4.0361 13 7 0.9029 -2.5781 5.3043 14 6 0.2228 -2.5551 6.4676 15 8 -0.9783 -2.3868 6.4647 16 6 0.9548 -2.7384 7.7721 17 6 -0.0427 -2.6713 8.9305 18 6 -0.3399 -1.2409 9.3864 19 16 -0.5807 -1.8357 11.0834 20 8 -1.8597 -2.4215 11.2841 21 8 0.0337 -0.9970 12.0520 22 6 0.5933 -2.9687 10.2902 23 6 1.7039 -3.6309 -0.1884 24 6 2.7655 -3.6431 -1.2902 25 6 1.2873 -3.8149 -1.6490 26 1 -0.4849 0.8379 0.0599 27 1 -0.0520 -1.3115 1.5493 28 1 -0.2968 -3.0711 1.4393 29 1 1.6864 -3.4373 2.8821 30 1 1.9312 -1.6776 2.9921 31 1 -0.3060 -1.4305 4.0317 32 1 -0.5514 -3.1900 3.9221 33 1 1.8636 -2.7123 5.3067 34 1 1.4516 -3.7085 7.7768 35 1 1.6978 -1.9491 7.8859 36 1 -0.9422 -3.2570 8.7407 37 1 0.5147 -0.5722 9.2839 38 1 -1.2472 -0.8298 8.9436 39 1 0.4679 -4.0048 10.6045 40 1 1.6279 -2.6330 10.3620 41 1 1.6465 -4.5015 0.4649 42 1 3.2380 -2.6944 -1.5444 43 1 3.4061 -4.5220 -1.3619 44 1 0.9562 -4.8067 -1.9568 45 1 0.7872 -2.9795 -2.1389 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689995717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:48 Heat of formation + Delta-G solvation = -43.485752 kcal Electronic energy + Delta-G solvation = -25608.457807 eV Core-core repulsion = 21755.611209 eV Total energy + Delta-G solvation = -3852.846598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.90117 -37.76556 -37.33238 -37.05870 -36.35904 -35.26207 -33.62017 -31.74253 -30.14055 -28.80804 -27.04866 -25.34450 -23.58227 -21.64449 -21.43476 -21.04669 -20.20195 -19.64112 -19.18395 -17.32459 -16.92172 -16.71375 -16.47742 -16.32425 -15.80947 -15.56695 -15.37514 -14.88527 -14.65400 -14.20670 -13.76714 -13.63826 -13.42221 -13.32105 -12.72238 -12.67549 -12.59833 -12.56634 -12.21666 -11.97418 -11.72260 -11.62172 -11.46294 -11.07155 -10.96925 -10.87217 -10.77642 -10.71879 -10.67718 -10.22950 -10.14059 -9.81079 -9.67388 -9.61164 -9.30622 -8.92313 -8.52775 -6.63689 -5.84803 -3.45744 -0.21415 1.62880 2.63724 3.15747 3.28720 3.32771 3.38663 3.40112 3.62987 3.82581 4.23620 4.38726 4.49834 4.68983 4.75582 4.88310 4.94045 5.01623 5.12417 5.19117 5.21086 5.27357 5.44746 5.59469 5.67573 5.70656 5.86561 5.95752 6.07525 6.22477 6.32418 6.33938 6.45204 6.60580 6.62905 6.71221 6.99019 7.04938 7.18434 7.56341 7.61361 7.74451 8.24759 8.40984 9.08775 9.71959 10.27530 11.10798 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.018487 B = 0.002119 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.181993 B =13211.669669 C =14073.983726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.010 3.990 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.258 4.258 8 H 0.066 0.934 9 N -0.552 5.552 10 C 0.149 3.851 11 C -0.145 4.145 12 C 0.120 3.880 13 N -0.726 5.726 14 C 0.506 3.494 15 O -0.542 6.542 16 C -0.120 4.120 17 C -0.052 4.052 18 C -0.595 4.595 19 S 2.408 3.592 20 O -0.914 6.914 21 O -0.930 6.930 22 C -0.601 4.601 23 C 0.120 3.880 24 C -0.197 4.197 25 C -0.222 4.222 26 H 0.255 0.745 27 H 0.103 0.897 28 H 0.028 0.972 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.399 0.601 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.142 0.858 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.144 0.856 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.566 -7.037 18.880 20.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.190 4.190 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.387 4.387 8 H 0.084 0.916 9 N -0.268 5.268 10 C 0.022 3.978 11 C -0.185 4.185 12 C -0.003 4.003 13 N -0.377 5.377 14 C 0.291 3.709 15 O -0.419 6.419 16 C -0.161 4.161 17 C -0.073 4.073 18 C -0.724 4.724 19 S 2.590 3.410 20 O -0.911 6.911 21 O -0.927 6.927 22 C -0.729 4.729 23 C 0.011 3.989 24 C -0.235 4.235 25 C -0.263 4.263 26 H 0.065 0.935 27 H 0.120 0.880 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.233 0.767 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.142 0.858 37 H 0.160 0.840 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.162 0.838 41 H 0.104 0.896 42 H 0.115 0.885 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.971 -6.513 19.872 21.005 hybrid contribution 1.541 0.562 -1.248 2.061 sum 3.512 -5.951 18.624 19.865 Atomic orbital electron populations 1.70048 1.05494 1.26011 1.50853 1.25136 0.94980 0.98759 1.00151 0.86362 0.79756 0.84064 0.77430 1.20066 1.21614 1.21384 1.19102 0.94402 0.85459 1.39761 0.91604 1.43420 1.49121 1.01418 1.32883 1.20857 0.90460 1.03332 0.83150 1.22437 0.98827 1.01211 0.96035 1.21463 0.95542 1.01771 0.81554 1.46191 1.11656 1.73287 1.06542 1.20540 0.88036 0.76791 0.85484 1.90710 1.14628 1.49029 1.87578 1.21507 0.98330 1.04972 0.91313 1.21211 0.99769 0.93828 0.92450 1.31030 1.11797 1.05390 1.24137 1.08429 0.76669 0.78863 0.77044 1.93727 1.36123 1.75646 1.85616 1.93639 1.77093 1.63819 1.58179 1.31067 1.16601 1.17184 1.08087 1.21222 1.00355 0.90218 0.87072 1.23036 0.91935 1.01815 1.06714 1.23367 0.97342 1.00656 1.04971 0.93520 0.88002 0.95379 0.93207 0.91589 0.91470 0.91929 0.76702 0.87966 0.88171 0.85840 0.83972 0.85073 0.85564 0.83782 0.89647 0.88505 0.90806 0.91243 0.89024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.32 11.33 55.49 0.63 -23.69 16 2 C 0.01 0.27 4.96 -17.43 -0.09 0.18 16 3 Si 0.89 20.69 29.61 -169.99 -5.03 15.66 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.26 -6.61 8.63 -15.05 -0.13 -6.74 16 8 H 0.07 1.70 6.55 -52.49 -0.34 1.36 16 9 N -0.55 -12.90 2.78 -165.66 -0.46 -13.36 16 10 C 0.15 3.21 5.34 -4.05 -0.02 3.19 16 11 C -0.14 -2.48 5.65 -26.73 -0.15 -2.63 16 12 C 0.12 1.85 5.67 -4.04 -0.02 1.83 16 13 N -0.73 -8.77 5.56 -60.30 -0.33 -9.11 16 14 C 0.51 6.14 7.83 -10.99 -0.09 6.05 16 15 O -0.54 -8.78 15.78 5.56 0.09 -8.69 16 16 C -0.12 -0.86 5.48 -27.88 -0.15 -1.01 16 17 C -0.05 -0.37 2.80 -90.57 -0.25 -0.62 16 18 C -0.59 -3.87 7.49 37.18 0.28 -3.59 16 19 S 2.41 15.21 7.55 -107.50 -0.81 14.40 16 20 O -0.91 -9.28 18.18 -57.30 -1.04 -10.32 16 21 O -0.93 -8.86 18.18 -57.30 -1.04 -9.90 16 22 C -0.60 -2.50 7.49 37.17 0.28 -2.22 16 23 C 0.12 2.47 6.56 -67.93 -0.45 2.03 16 24 C -0.20 -3.76 9.80 -26.69 -0.26 -4.02 16 25 C -0.22 -4.44 10.36 -26.69 -0.28 -4.72 16 26 H 0.25 6.81 8.32 -40.82 -0.34 6.47 16 27 H 0.10 2.53 5.36 -51.93 -0.28 2.25 16 28 H 0.03 0.58 8.07 -51.93 -0.42 0.17 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.40 3.73 8.47 -40.82 -0.35 3.38 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.52 7.89 -51.93 -0.41 0.11 16 36 H 0.12 1.02 7.71 -51.93 -0.40 0.62 16 37 H 0.14 0.69 7.94 -51.93 -0.41 0.28 16 38 H 0.13 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.13 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.14 0.35 8.12 -51.93 -0.42 -0.07 16 41 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 42 H 0.10 2.02 6.37 -51.93 -0.33 1.69 16 43 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 45 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 LS Contribution 382.70 15.07 5.77 5.77 Total: -1.00 -35.64 382.70 -10.72 -46.36 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -7.15 Total: 5.15 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -1.33 Total: -12.27 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.17 Total: -46.15 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -2.00 Total: -28.91 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Atomic # 16 Polarization: 15.21 SS G_CDS: -0.81 Total: 14.40 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.64 -10.72 -46.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689995717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.876 kcal (2) G-P(sol) polarization free energy of solvation -35.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds